Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_F10
(912 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P54680|FIMB_DICDI Fimbrin 68 3e-11
sp|Q9FKI0|FIMB2_ARATH Fimbrin-like protein 2 68 4e-11
sp|Q9FJ70|FIMB3_ARATH Putative fimbrin-like protein 3 65 2e-10
sp|Q7G188|FIMB1_ARATH Fimbrin 1 (AtFIM1) 64 6e-10
sp|Q63598|PLST_RAT T-plastin (Plastin-3) 54 8e-07
sp|O59945|FIMB_SCHPO Fimbrin 54 8e-07
sp|P13797|PLST_HUMAN T-plastin (Plastin-3) 53 1e-06
sp|Q99K51|PLST_MOUSE T-plastin (Plastin-3) 53 1e-06
sp|O88818|PLST_CRIGR T-plastin (Plastin-3) 53 1e-06
sp|Q6P698|PLSL_BRARE L-plastin (Lymphocyte cytosolic plasti... 51 5e-06
>sp|P54680|FIMB_DICDI Fimbrin
Length = 610
Score = 68.2 bits (165), Expect = 3e-11
Identities = 34/94 (36%), Positives = 54/94 (57%), Gaps = 3/94 (3%)
Frame = +1
Query: 637 TYRNWINSQGILTHVNSFYYDTTDGLVFLYIFDKLNPGCVNWSKVVRNFDSKRRLFQEQ- 813
T+RNW+NS G+ VN+ Y T DGL+ + +FDK+ PG V+ KV N+ + + E
Sbjct: 384 TFRNWMNSLGVDPFVNNLYEGTYDGLILIQLFDKIYPGLVDHKKV--NYPPYKAMGAEMK 441
Query: 814 --GNCNEVIEAGKKCNLKIQNMSGENIRTEIKSI 909
NCN I+ GK C + + G+N+ + K++
Sbjct: 442 KIENCNYAIQLGKDCKYSLVGIDGKNVYDKNKTL 475
>sp|Q9FKI0|FIMB2_ARATH Fimbrin-like protein 2
Length = 687
Score = 67.8 bits (164), Expect = 4e-11
Identities = 33/83 (39%), Positives = 50/83 (60%)
Frame = +1
Query: 640 YRNWINSQGILTHVNSFYYDTTDGLVFLYIFDKLNPGCVNWSKVVRNFDSKRRLFQEQGN 819
+R WINS G T+VN+ + D +G V L + DK++PG VNW N + F++ N
Sbjct: 398 FRLWINSLGTATYVNNVFEDLRNGWVLLEVLDKVSPGSVNWKHA--NKPPIKMPFKKVEN 455
Query: 820 CNEVIEAGKKCNLKIQNMSGENI 888
CNEVI+ GK+ + N++G +I
Sbjct: 456 CNEVIKIGKELRFSLVNVAGNDI 478
>sp|Q9FJ70|FIMB3_ARATH Putative fimbrin-like protein 3
Length = 714
Score = 65.5 bits (158), Expect = 2e-10
Identities = 30/83 (36%), Positives = 51/83 (61%)
Frame = +1
Query: 640 YRNWINSQGILTHVNSFYYDTTDGLVFLYIFDKLNPGCVNWSKVVRNFDSKRRLFQEQGN 819
YR WINS GI ++VN+ + D +G + L + DK+ PG VNW + + + F++ N
Sbjct: 399 YRLWINSLGIESYVNNVFEDVRNGWILLEVVDKVYPGSVNWKQASK--PPIKMPFRKVEN 456
Query: 820 CNEVIEAGKKCNLKIQNMSGENI 888
CN+V++ GK+ + N++G +I
Sbjct: 457 CNQVVKIGKEMRFSLVNVAGNDI 479
>sp|Q7G188|FIMB1_ARATH Fimbrin 1 (AtFIM1)
Length = 687
Score = 63.9 bits (154), Expect = 6e-10
Identities = 30/83 (36%), Positives = 50/83 (60%)
Frame = +1
Query: 640 YRNWINSQGILTHVNSFYYDTTDGLVFLYIFDKLNPGCVNWSKVVRNFDSKRRLFQEQGN 819
YR WINS GI ++VN+ + D +G + L + DK++P VNW + + F++ N
Sbjct: 398 YRLWINSLGIDSYVNNVFEDVRNGWILLEVLDKVSPSSVNWKHASK--PPIKMPFRKVEN 455
Query: 820 CNEVIEAGKKCNLKIQNMSGENI 888
CN+VI+ GK+ + N++G +I
Sbjct: 456 CNQVIKIGKQLKFSLVNVAGNDI 478
>sp|Q63598|PLST_RAT T-plastin (Plastin-3)
Length = 627
Score = 53.5 bits (127), Expect = 8e-07
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
Frame = +1
Query: 637 TYRNWINSQGILTHVNSFYYDTTDGLVFLYIFDKLNPGCVNWSKVVR-NFDSKRRLFQEQ 813
T+RNW+NS G+ HVN Y D D LV L +++++ V+WSKV + + ++
Sbjct: 399 TFRNWMNSLGVNPHVNHLYVDLQDALVILQLYERIKVP-VDWSKVNKPPYPKLGANMKKL 457
Query: 814 GNCNEVIEAGK-KCNLKIQNMSGENI 888
NCN +E GK + + + G+++
Sbjct: 458 ENCNYAVELGKNQAKFSLVGIGGQDL 483
>sp|O59945|FIMB_SCHPO Fimbrin
Length = 614
Score = 53.5 bits (127), Expect = 8e-07
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Frame = +1
Query: 649 WINSQGILTHVNSFYYDTTDGLVFLYIFDKLNPGCVNWSKVVR---NFDSKRRLFQEQGN 819
W+NS + ++ F+ + DGL+ L +DK+ P VNW KV + + D R F+ N
Sbjct: 394 WLNSLDVTPSIHDFFNNLRDGLILLQAYDKITPNTVNWKKVNKAPASGDEMMR-FKAVEN 452
Query: 820 CNEVIEAGKKCNLKIQNMSGENI 888
CN ++ GK + + G +I
Sbjct: 453 CNYAVDLGKNQGFSLVGIQGADI 475
>sp|P13797|PLST_HUMAN T-plastin (Plastin-3)
Length = 627
Score = 52.8 bits (125), Expect = 1e-06
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Frame = +1
Query: 637 TYRNWINSQGILTHVNSFYYDTTDGLVFLYIFDKLNPGCVNWSKVVR-NFDSKRRLFQEQ 813
T+RNW+NS G+ HVN Y D D LV L +++++ V+WSKV + + ++
Sbjct: 399 TFRNWMNSLGVNPHVNHLYADLQDALVILQLYERIKVP-VDWSKVNKPPYPKLGANMKKL 457
Query: 814 GNCNEVIEAGK 846
NCN +E GK
Sbjct: 458 ENCNYAVELGK 468
>sp|Q99K51|PLST_MOUSE T-plastin (Plastin-3)
Length = 627
Score = 52.8 bits (125), Expect = 1e-06
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Frame = +1
Query: 637 TYRNWINSQGILTHVNSFYYDTTDGLVFLYIFDKLNPGCVNWSKVVR-NFDSKRRLFQEQ 813
T+RNW+NS G+ HVN Y D D LV L +++++ V+WSKV + + ++
Sbjct: 399 TFRNWMNSLGVNPHVNHLYADLQDALVILQLYERIKVP-VDWSKVNKPPYPKLGANMKKL 457
Query: 814 GNCNEVIEAGK 846
NCN +E GK
Sbjct: 458 ENCNYAVELGK 468
>sp|O88818|PLST_CRIGR T-plastin (Plastin-3)
Length = 627
Score = 52.8 bits (125), Expect = 1e-06
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Frame = +1
Query: 637 TYRNWINSQGILTHVNSFYYDTTDGLVFLYIFDKLNPGCVNWSKVVR-NFDSKRRLFQEQ 813
T+RNW+NS G+ HVN Y D D LV L +++++ V+WSKV + + ++
Sbjct: 399 TFRNWMNSLGVNPHVNHLYADLQDALVILQLYERIKVP-VDWSKVNKPPYPKLGANMKKL 457
Query: 814 GNCNEVIEAGK 846
NCN +E GK
Sbjct: 458 ENCNYAVELGK 468
>sp|Q6P698|PLSL_BRARE L-plastin (Lymphocyte cytosolic plastin 1)
Length = 624
Score = 50.8 bits (120), Expect = 5e-06
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Frame = +1
Query: 637 TYRNWINSQGILTHVNSFYYDTTDGLVFLYIFDKLNPGCVNWSKVVR-NFDSKRRLFQEQ 813
T+RNW+NS G+ VN Y D D LV +++K+ V+W KV + + ++
Sbjct: 397 TFRNWMNSLGVNPRVNHLYVDLADALVIFQLYEKIKVP-VDWDKVNKPPYPKLGSNMKKL 455
Query: 814 GNCNEVIEAGKK-CNLKIQNMSGENI 888
NCN +E GKK + ++G+++
Sbjct: 456 ENCNYAVELGKKEAKFSLVGIAGQDL 481
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,866,926
Number of Sequences: 369166
Number of extensions: 2002175
Number of successful extensions: 5496
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5483
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9270587090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)