Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_F08
(216 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O02192|HSP83_DROAV Heat shock protein 83 (HSP 82) 55 4e-08
sp|P02828|HSP83_DROME Heat shock protein 83 (HSP 82) 55 5e-08
sp|P08238|HS90B_HUMAN Heat shock protein HSP 90-beta (HSP 8... 54 1e-07
sp|Q9GKX8|HS90B_HORSE Heat shock protein HSP 90-beta (HSP 84) 53 2e-07
sp|Q90474|HS90A_BRARE Heat shock protein HSP 90-alpha 53 2e-07
sp|P11499|HS90B_MOUSE Heat shock protein HSP 90-beta (HSP 8... 53 2e-07
sp|P07901|HS90A_MOUSE Heat shock protein HSP 90-alpha (HSP ... 53 2e-07
sp|P46633|HS90A_CRIGR Heat shock protein HSP 90-alpha (HSP 86) 53 2e-07
sp|P51818|HSP83_ARATH Heat shock protein 81-3 (HSP81-3) (HS... 52 3e-07
sp|P07900|HS90A_HUMAN Heat shock protein HSP 90-alpha (HSP 86) 52 4e-07
>sp|O02192|HSP83_DROAV Heat shock protein 83 (HSP 82)
Length = 716
Score = 55.5 bits (132), Expect = 4e-08
Identities = 30/53 (56%), Positives = 36/53 (67%), Gaps = 2/53 (3%)
Frame = +3
Query: 3 PQVHGNRIHRMIKLGLGIEDDD--VEMDATEAGDVPVVASTAEEDAGKMEEVD 155
PQVH +RI+RMIKLGLGI++D+ DA AGD P + EDA MEEVD
Sbjct: 665 PQVHASRIYRMIKLGLGIDEDEPMTTEDAQSAGDAPSLVEDT-EDASHMEEVD 716
>sp|P02828|HSP83_DROME Heat shock protein 83 (HSP 82)
Length = 717
Score = 55.1 bits (131), Expect = 5e-08
Identities = 30/53 (56%), Positives = 36/53 (67%), Gaps = 2/53 (3%)
Frame = +3
Query: 3 PQVHGNRIHRMIKLGLGIEDDD--VEMDATEAGDVPVVASTAEEDAGKMEEVD 155
PQVH +RI+RMIKLGLGI++D+ DA AGD P + EDA MEEVD
Sbjct: 666 PQVHASRIYRMIKLGLGIDEDEPMTTDDAQSAGDAPSLVEDT-EDASHMEEVD 717
>sp|P08238|HS90B_HUMAN Heat shock protein HSP 90-beta (HSP 84) (HSP 90)
Length = 724
Score = 53.5 bits (127), Expect = 1e-07
Identities = 28/54 (51%), Positives = 38/54 (70%), Gaps = 3/54 (5%)
Frame = +3
Query: 3 PQVHGNRIHRMIKLGLGIEDDDV---EMDATEAGDVPVVASTAEEDAGKMEEVD 155
PQ H NRI+RMIKLGLGI++D+V E +A ++P + +EDA +MEEVD
Sbjct: 673 PQTHSNRIYRMIKLGLGIDEDEVAAEEPNAAVPDEIPPL--EGDEDASRMEEVD 724
>sp|Q9GKX8|HS90B_HORSE Heat shock protein HSP 90-beta (HSP 84)
Length = 724
Score = 53.1 bits (126), Expect = 2e-07
Identities = 28/54 (51%), Positives = 37/54 (68%), Gaps = 3/54 (5%)
Frame = +3
Query: 3 PQVHGNRIHRMIKLGLGIEDDDV---EMDATEAGDVPVVASTAEEDAGKMEEVD 155
PQ H NRI+RMIKLGLGI++D+V E A ++P + +EDA +MEEVD
Sbjct: 673 PQTHSNRIYRMIKLGLGIDEDEVAAEEPSAAVPDEIPPL--EGDEDASRMEEVD 724
>sp|Q90474|HS90A_BRARE Heat shock protein HSP 90-alpha
Length = 726
Score = 53.1 bits (126), Expect = 2e-07
Identities = 28/54 (51%), Positives = 36/54 (66%), Gaps = 3/54 (5%)
Frame = +3
Query: 3 PQVHGNRIHRMIKLGLGIEDDD---VEMDATEAGDVPVVASTAEEDAGKMEEVD 155
PQ H NRI+RMIKLGLGI+DDD E+ D+PV+ ++D +MEEVD
Sbjct: 675 PQTHANRIYRMIKLGLGIDDDDSVVEEISQPAEEDMPVL--EGDDDTSRMEEVD 726
>sp|P11499|HS90B_MOUSE Heat shock protein HSP 90-beta (HSP 84) (Tumor-specific
transplantation 84 kDa antigen) (TSTA)
Length = 724
Score = 53.1 bits (126), Expect = 2e-07
Identities = 28/54 (51%), Positives = 37/54 (68%), Gaps = 3/54 (5%)
Frame = +3
Query: 3 PQVHGNRIHRMIKLGLGIEDDDV---EMDATEAGDVPVVASTAEEDAGKMEEVD 155
PQ H NRI+RMIKLGLGI++D+V E A ++P + +EDA +MEEVD
Sbjct: 673 PQTHSNRIYRMIKLGLGIDEDEVTAEEPSAAVPDEIPPL--EGDEDASRMEEVD 724
>sp|P07901|HS90A_MOUSE Heat shock protein HSP 90-alpha (HSP 86) (Tumor specific
transplantation 86 kDa antigen) (TSTA)
Length = 733
Score = 52.8 bits (125), Expect = 2e-07
Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 3/54 (5%)
Frame = +3
Query: 3 PQVHGNRIHRMIKLGLGIEDDDVEMDATEAG---DVPVVASTAEEDAGKMEEVD 155
PQ H NRI+RMIKLGLGI++DD +D T A ++P + ++D +MEEVD
Sbjct: 682 PQTHANRIYRMIKLGLGIDEDDPTVDDTSAAVTEEMPPL--EGDDDTSRMEEVD 733
>sp|P46633|HS90A_CRIGR Heat shock protein HSP 90-alpha (HSP 86)
Length = 733
Score = 52.8 bits (125), Expect = 2e-07
Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 3/54 (5%)
Frame = +3
Query: 3 PQVHGNRIHRMIKLGLGIEDDDVEMDATEAG---DVPVVASTAEEDAGKMEEVD 155
PQ H NRI+RMIKLGLGI++DD +D T A ++P + ++D +MEEVD
Sbjct: 682 PQTHANRIYRMIKLGLGIDEDDPTVDDTSAAVTEEMPPL--EGDDDTSRMEEVD 733
>sp|P51818|HSP83_ARATH Heat shock protein 81-3 (HSP81-3) (HSP81.2)
Length = 699
Score = 52.4 bits (124), Expect = 3e-07
Identities = 28/52 (53%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Frame = +3
Query: 3 PQVHGNRIHRMIKLGLGIEDDD-VEMDATEAGDVPVVASTAEEDAGKMEEVD 155
P G+RIHRM+KLGL I+DDD VE DA D+P + A+ + KMEEVD
Sbjct: 652 PNTFGSRIHRMLKLGLSIDDDDVVEADA----DMPPLEDDADAEGSKMEEVD 699
>sp|P07900|HS90A_HUMAN Heat shock protein HSP 90-alpha (HSP 86)
Length = 732
Score = 52.0 bits (123), Expect = 4e-07
Identities = 27/54 (50%), Positives = 36/54 (66%), Gaps = 3/54 (5%)
Frame = +3
Query: 3 PQVHGNRIHRMIKLGLGIEDDDVEMDATEAG---DVPVVASTAEEDAGKMEEVD 155
PQ H NRI+RMIKLGLGI++DD D T A ++P + ++D +MEEVD
Sbjct: 681 PQTHANRIYRMIKLGLGIDEDDPTADDTSAAVTEEMPPL--EGDDDTSRMEEVD 732
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,519,456
Number of Sequences: 369166
Number of extensions: 263145
Number of successful extensions: 1027
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 68,354,980
effective HSP length: 43
effective length of database: 60,411,375
effective search space used: 1691518500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)