Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_F04-2
(112 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P31689|DNJA1_HUMAN DnaJ homolog subfamily A member 1 (He... 54 1e-07
sp|Q9JMC3|DNJA4_MOUSE DnaJ homolog subfamily A member 4 (Mm... 54 1e-07
sp|P63036|DNJA1_RAT DnaJ homolog subfamily A member 1 (DnaJ... 54 1e-07
sp|Q8WW22|DNJA4_HUMAN DnaJ homolog subfamily A member 4 54 1e-07
sp|O60884|DNJA2_HUMAN DnaJ homolog subfamily A member 2 (HI... 51 7e-07
sp|Q9QYJ0|DNJA2_MOUSE DnaJ homolog subfamily A member 2 (mDj3) 51 7e-07
sp|O35824|DNJA2_RAT DnaJ homolog subfamily A member 2 (RDJ2) 51 7e-07
sp|Q9H3Z4|DNJC5_HUMAN DnaJ homolog subfamily C member 5 (Cy... 48 6e-06
sp|P60905|DNJC5_RAT DnaJ homolog subfamily C member 5 (Cyst... 48 6e-06
sp|Q29455|DNJC5_BOVIN DnaJ homolog subfamily C member 5 (Cy... 48 6e-06
>sp|P31689|DNJA1_HUMAN DnaJ homolog subfamily A member 1 (Heat shock 40 kDa protein 4)
(DnaJ protein homolog 2) (HSJ-2) (HSDJ)
Length = 397
Score = 53.5 bits (127), Expect = 1e-07
Identities = 23/27 (85%), Positives = 26/27 (96%)
Frame = +1
Query: 1 AYRKLALKYHPDKNPDAGDKFKEISQA 81
AYRKLALKYHPDKNP+ G+KFK+ISQA
Sbjct: 25 AYRKLALKYHPDKNPNEGEKFKQISQA 51
>sp|Q9JMC3|DNJA4_MOUSE DnaJ homolog subfamily A member 4 (MmDjA4)
Length = 397
Score = 53.5 bits (127), Expect = 1e-07
Identities = 24/27 (88%), Positives = 25/27 (92%)
Frame = +1
Query: 1 AYRKLALKYHPDKNPDAGDKFKEISQA 81
AYRKLALKYHPDKNPD G+KFK ISQA
Sbjct: 25 AYRKLALKYHPDKNPDEGEKFKLISQA 51
>sp|P63036|DNJA1_RAT DnaJ homolog subfamily A member 1 (DnaJ-like protein 1)
sp|P63037|DNJA1_MOUSE DnaJ homolog subfamily A member 1 (Heat shock 40 kDa protein 4)
(DnaJ protein homolog 2) (HSJ-2)
Length = 397
Score = 53.5 bits (127), Expect = 1e-07
Identities = 23/27 (85%), Positives = 26/27 (96%)
Frame = +1
Query: 1 AYRKLALKYHPDKNPDAGDKFKEISQA 81
AYRKLALKYHPDKNP+ G+KFK+ISQA
Sbjct: 25 AYRKLALKYHPDKNPNEGEKFKQISQA 51
>sp|Q8WW22|DNJA4_HUMAN DnaJ homolog subfamily A member 4
Length = 397
Score = 53.5 bits (127), Expect = 1e-07
Identities = 24/27 (88%), Positives = 25/27 (92%)
Frame = +1
Query: 1 AYRKLALKYHPDKNPDAGDKFKEISQA 81
AYRKLALKYHPDKNPD G+KFK ISQA
Sbjct: 25 AYRKLALKYHPDKNPDEGEKFKLISQA 51
>sp|O60884|DNJA2_HUMAN DnaJ homolog subfamily A member 2 (HIRA interacting protein 4)
(Cell cycle progression restoration gene 3 protein)
(Dnj3)
Length = 412
Score = 51.2 bits (121), Expect = 7e-07
Identities = 23/27 (85%), Positives = 25/27 (92%)
Frame = +1
Query: 1 AYRKLALKYHPDKNPDAGDKFKEISQA 81
AYRKLA +YHPDKNP+AGDKFKEIS A
Sbjct: 27 AYRKLAKEYHPDKNPNAGDKFKEISFA 53
>sp|Q9QYJ0|DNJA2_MOUSE DnaJ homolog subfamily A member 2 (mDj3)
Length = 412
Score = 51.2 bits (121), Expect = 7e-07
Identities = 23/27 (85%), Positives = 25/27 (92%)
Frame = +1
Query: 1 AYRKLALKYHPDKNPDAGDKFKEISQA 81
AYRKLA +YHPDKNP+AGDKFKEIS A
Sbjct: 27 AYRKLAKEYHPDKNPNAGDKFKEISFA 53
>sp|O35824|DNJA2_RAT DnaJ homolog subfamily A member 2 (RDJ2)
Length = 412
Score = 51.2 bits (121), Expect = 7e-07
Identities = 23/27 (85%), Positives = 25/27 (92%)
Frame = +1
Query: 1 AYRKLALKYHPDKNPDAGDKFKEISQA 81
AYRKLA +YHPDKNP+AGDKFKEIS A
Sbjct: 27 AYRKLAKEYHPDKNPNAGDKFKEISFA 53
>sp|Q9H3Z4|DNJC5_HUMAN DnaJ homolog subfamily C member 5 (Cysteine string protein) (CSP)
Length = 198
Score = 48.1 bits (113), Expect = 6e-06
Identities = 23/30 (76%), Positives = 25/30 (83%), Gaps = 3/30 (10%)
Frame = +1
Query: 1 AYRKLALKYHPDKNPD---AGDKFKEISQA 81
+YRKLALKYHPDKNPD A DKFKEI+ A
Sbjct: 34 SYRKLALKYHPDKNPDNPEAADKFKEINNA 63
>sp|P60905|DNJC5_RAT DnaJ homolog subfamily C member 5 (Cysteine string protein) (CSP)
sp|P60904|DNJC5_MOUSE DnaJ homolog subfamily C member 5 (Cysteine string protein) (CSP)
Length = 198
Score = 48.1 bits (113), Expect = 6e-06
Identities = 23/30 (76%), Positives = 25/30 (83%), Gaps = 3/30 (10%)
Frame = +1
Query: 1 AYRKLALKYHPDKNPD---AGDKFKEISQA 81
+YRKLALKYHPDKNPD A DKFKEI+ A
Sbjct: 34 SYRKLALKYHPDKNPDNPEAADKFKEINNA 63
>sp|Q29455|DNJC5_BOVIN DnaJ homolog subfamily C member 5 (Cysteine string protein) (CSP)
Length = 198
Score = 48.1 bits (113), Expect = 6e-06
Identities = 23/30 (76%), Positives = 25/30 (83%), Gaps = 3/30 (10%)
Frame = +1
Query: 1 AYRKLALKYHPDKNPD---AGDKFKEISQA 81
+YRKLALKYHPDKNPD A DKFKEI+ A
Sbjct: 34 SYRKLALKYHPDKNPDNPEAADKFKEINNA 63
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,474,122
Number of Sequences: 369166
Number of extensions: 116239
Number of successful extensions: 927
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 68,354,980
effective HSP length: 10
effective length of database: 66,507,630
effective search space used: 1729198380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)