Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_F01
(501 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q71V39|EF1A2_RABIT Elongation factor 1-alpha 2 (EF-1-alp... 234 9e-62
sp|P62631|EF1A2_MOUSE Elongation factor 1-alpha 2 (EF-1-alp... 233 2e-61
sp|P28295|EF1A_ABSGL Elongation factor 1-alpha (EF-1-alpha) 233 2e-61
sp|P06805|EF1A1_RHIRA Elongation factor 1-alpha (EF-1-alpha) 231 7e-61
sp|P14864|EF1A2_RHIRA Elongation factor 1-alpha (EF-1-alpha) 231 7e-61
sp|P27592|EF1A_ONCVO Elongation factor 1-alpha (EF-1-alpha) 230 1e-60
sp|P17508|EF1A3_XENLA Elongation factor 1-alpha, oocyte for... 229 2e-60
sp|P17507|EF1A2_XENLA Elongation factor 1-alpha, oocyte for... 228 6e-60
sp|P10126|EF1A1_MOUSE Elongation factor 1-alpha 1 (EF-1-alp... 227 1e-59
sp|P68105|EF1A1_RABIT Elongation factor 1-alpha 1 (EF-1-alp... 227 1e-59
>sp|Q71V39|EF1A2_RABIT Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
sp|Q05639|EF1A2_HUMAN Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
Length = 463
Score = 234 bits (597), Expect = 9e-62
Identities = 109/137 (79%), Positives = 123/137 (89%)
Frame = +1
Query: 1 ALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVL 180
ALPGDNVGFN+KNVSVK+IRRGNVC DSKSDP ++A F +QVII+NHPG+I AGYSPV+
Sbjct: 302 ALPGDNVGFNVKNVSVKDIRRGNVCGDSKSDPPQEAAQFTSQVIILNHPGQISAGYSPVI 361
Query: 181 DCHTAHIACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPL 360
DCHTAHIACKFAEL +KIDRRSGK LED PK KSGDA +V +VP KPMCVE+FS+YPPL
Sbjct: 362 DCHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPL 421
Query: 361 GRFAVRDMKQTVAVGVI 411
GRFAVRDM+QTVAVGVI
Sbjct: 422 GRFAVRDMRQTVAVGVI 438
>sp|P62631|EF1A2_MOUSE Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
sp|P62632|EF1A2_RAT Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
Length = 463
Score = 233 bits (594), Expect = 2e-61
Identities = 108/137 (78%), Positives = 123/137 (89%)
Frame = +1
Query: 1 ALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVL 180
ALPGDNVGFN+KNVSVK+IRRGNVC DSK+DP ++A F +QVII+NHPG+I AGYSPV+
Sbjct: 302 ALPGDNVGFNVKNVSVKDIRRGNVCGDSKADPPQEAAQFTSQVIILNHPGQISAGYSPVI 361
Query: 181 DCHTAHIACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPL 360
DCHTAHIACKFAEL +KIDRRSGK LED PK KSGDA +V +VP KPMCVE+FS+YPPL
Sbjct: 362 DCHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPL 421
Query: 361 GRFAVRDMKQTVAVGVI 411
GRFAVRDM+QTVAVGVI
Sbjct: 422 GRFAVRDMRQTVAVGVI 438
>sp|P28295|EF1A_ABSGL Elongation factor 1-alpha (EF-1-alpha)
Length = 458
Score = 233 bits (593), Expect = 2e-61
Identities = 106/136 (77%), Positives = 126/136 (92%)
Frame = +1
Query: 4 LPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVLD 183
LPGDNVGFN+KNVSVK+IRRGNVCSDSK+DPA++A F AQVI++NHPG+I AGY+PVLD
Sbjct: 301 LPGDNVGFNVKNVSVKDIRRGNVCSDSKNDPAKEAGSFTAQVIVLNHPGQIGAGYAPVLD 360
Query: 184 CHTAHIACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLG 363
CHTAHIACKFAEL++KIDRRSGK LED PK KSGD+ +V+++PSKPMCVE +++YPPLG
Sbjct: 361 CHTAHIACKFAELLEKIDRRSGKKLEDAPKFVKSGDSAIVKMIPSKPMCVEAYTDYPPLG 420
Query: 364 RFAVRDMKQTVAVGVI 411
RFAVRDM+QTVAVGVI
Sbjct: 421 RFAVRDMRQTVAVGVI 436
>sp|P06805|EF1A1_RHIRA Elongation factor 1-alpha (EF-1-alpha)
Length = 458
Score = 231 bits (589), Expect = 7e-61
Identities = 105/136 (77%), Positives = 126/136 (92%)
Frame = +1
Query: 4 LPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVLD 183
LPGDNVGFN+KNVSVK+IRRGNVCSDSK+DPA+++ F AQVII+NHPG+I AGY+PVLD
Sbjct: 301 LPGDNVGFNVKNVSVKDIRRGNVCSDSKNDPAKESASFTAQVIILNHPGQISAGYAPVLD 360
Query: 184 CHTAHIACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLG 363
CHTAHIACKF+EL++KIDRRSGK +ED PK KSGD+ +V++VPSKPMCVE +++YPPLG
Sbjct: 361 CHTAHIACKFSELIEKIDRRSGKKMEDSPKFVKSGDSAIVKMVPSKPMCVEAYTDYPPLG 420
Query: 364 RFAVRDMKQTVAVGVI 411
RFAVRDM+QTVAVGVI
Sbjct: 421 RFAVRDMRQTVAVGVI 436
>sp|P14864|EF1A2_RHIRA Elongation factor 1-alpha (EF-1-alpha)
Length = 458
Score = 231 bits (589), Expect = 7e-61
Identities = 105/136 (77%), Positives = 126/136 (92%)
Frame = +1
Query: 4 LPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVLD 183
LPGDNVGFN+KNVSVK+IRRGNVCSDSK+DPA+++ F AQVII+NHPG+I AGY+PVLD
Sbjct: 301 LPGDNVGFNVKNVSVKDIRRGNVCSDSKNDPAKESASFTAQVIILNHPGQISAGYAPVLD 360
Query: 184 CHTAHIACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLG 363
CHTAHIACKF+EL++KIDRRSGK +ED PK KSGD+ +V++VPSKPMCVE +++YPPLG
Sbjct: 361 CHTAHIACKFSELIEKIDRRSGKKMEDSPKFVKSGDSAIVKMVPSKPMCVEAYTDYPPLG 420
Query: 364 RFAVRDMKQTVAVGVI 411
RFAVRDM+QTVAVGVI
Sbjct: 421 RFAVRDMRQTVAVGVI 436
>sp|P27592|EF1A_ONCVO Elongation factor 1-alpha (EF-1-alpha)
Length = 464
Score = 230 bits (587), Expect = 1e-60
Identities = 105/137 (76%), Positives = 125/137 (91%)
Frame = +1
Query: 1 ALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVL 180
ALPGDNVGFN+KN+S+K+IRRG+V SDSK+DPA++ F AQVIIMNHPG+I AGY+PVL
Sbjct: 302 ALPGDNVGFNVKNISIKDIRRGSVASDSKNDPAKETKMFTAQVIIMNHPGQISAGYTPVL 361
Query: 181 DCHTAHIACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPL 360
DCHTAHIACKFAEL +K+DRRSGK +ED PK KSGDAG++ L+P+KP+CVETF+EYPPL
Sbjct: 362 DCHTAHIACKFAELKEKVDRRSGKKVEDNPKSLKSGDAGIIDLIPTKPLCVETFTEYPPL 421
Query: 361 GRFAVRDMKQTVAVGVI 411
GRFAVRDM+QTVAVGVI
Sbjct: 422 GRFAVRDMRQTVAVGVI 438
>sp|P17508|EF1A3_XENLA Elongation factor 1-alpha, oocyte form (EF-1-alpha-O1) (EF-1AO1)
Length = 461
Score = 229 bits (585), Expect = 2e-60
Identities = 108/137 (78%), Positives = 121/137 (88%)
Frame = +1
Query: 1 ALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVL 180
ALPGDNVGFN+KN+SVK+IRRGNV DSK+DP QA F AQVII+NHPG+I AGY+PVL
Sbjct: 302 ALPGDNVGFNVKNISVKDIRRGNVAGDSKNDPPMQAGSFTAQVIILNHPGQISAGYAPVL 361
Query: 181 DCHTAHIACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPL 360
DCHTAHIACKFAEL +KIDRRSGK LED PK KSGDA +V ++P KPMCVETFS+YPPL
Sbjct: 362 DCHTAHIACKFAELKQKIDRRSGKKLEDDPKFLKSGDAAIVEMIPGKPMCVETFSDYPPL 421
Query: 361 GRFAVRDMKQTVAVGVI 411
GRFAVRDM+QTVAVGVI
Sbjct: 422 GRFAVRDMRQTVAVGVI 438
>sp|P17507|EF1A2_XENLA Elongation factor 1-alpha, oocyte form (EF-1-alpha-O) (EF-1AO) (42S
p48)
Length = 461
Score = 228 bits (581), Expect = 6e-60
Identities = 107/137 (78%), Positives = 121/137 (88%)
Frame = +1
Query: 1 ALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVL 180
ALPGDNVGFN+KN+SVK+IRRGNV DSK+DP QA F AQVII+NHPG+I AGY+PVL
Sbjct: 302 ALPGDNVGFNVKNISVKDIRRGNVAGDSKNDPPMQAGSFTAQVIILNHPGQISAGYAPVL 361
Query: 181 DCHTAHIACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPL 360
DCHTAHIACKFAEL +KIDRRSGK LED PK KSGDA +V ++P KPMCVE+FS+YPPL
Sbjct: 362 DCHTAHIACKFAELKQKIDRRSGKKLEDDPKFLKSGDAAIVEMIPGKPMCVESFSDYPPL 421
Query: 361 GRFAVRDMKQTVAVGVI 411
GRFAVRDM+QTVAVGVI
Sbjct: 422 GRFAVRDMRQTVAVGVI 438
>sp|P10126|EF1A1_MOUSE Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P62630|EF1A1_RAT Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P62629|EF1A1_CRIGR Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 227 bits (578), Expect = 1e-59
Identities = 107/137 (78%), Positives = 121/137 (88%)
Frame = +1
Query: 1 ALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVL 180
ALPGDNVGFN+KNVSVK++RRGNV DSK+DP +A F AQVII+NHPG+I AGY+PVL
Sbjct: 302 ALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVL 361
Query: 181 DCHTAHIACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPL 360
DCHTAHIACKFAEL +KIDRRSGK LED PK KSGDA +V +VP KPMCVE+FS+YPPL
Sbjct: 362 DCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPL 421
Query: 361 GRFAVRDMKQTVAVGVI 411
GRFAVRDM+QTVAVGVI
Sbjct: 422 GRFAVRDMRQTVAVGVI 438
>sp|P68105|EF1A1_RABIT Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|Q5R1X2|EF1A1_PANTR Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P68103|EF1A1_BOVIN Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P68104|EF1A1_HUMAN Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|Q66RN5|EF1A1_FELCA Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 227 bits (578), Expect = 1e-59
Identities = 107/137 (78%), Positives = 121/137 (88%)
Frame = +1
Query: 1 ALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVL 180
ALPGDNVGFN+KNVSVK++RRGNV DSK+DP +A F AQVII+NHPG+I AGY+PVL
Sbjct: 302 ALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVL 361
Query: 181 DCHTAHIACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPL 360
DCHTAHIACKFAEL +KIDRRSGK LED PK KSGDA +V +VP KPMCVE+FS+YPPL
Sbjct: 362 DCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPL 421
Query: 361 GRFAVRDMKQTVAVGVI 411
GRFAVRDM+QTVAVGVI
Sbjct: 422 GRFAVRDMRQTVAVGVI 438
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,976,201
Number of Sequences: 369166
Number of extensions: 1085340
Number of successful extensions: 3088
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3039
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3168768640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)