Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_E20
(313 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8A455|SYE_BACTN Glutamyl-tRNA synthetase (Glutamate--tR... 31 1.0
sp|Q64NI3|SYE_BACFR Glutamyl-tRNA synthetase (Glutamate--tR... 30 2.3
sp|P20592|MX2_HUMAN Interferon-induced GTP-binding protein ... 29 2.9
sp|Q9ZM66|FTSH_HELPJ Cell division protein ftsH homolog 29 3.8
sp|O32617|FTSH_HELFE Cell division protein ftsH homolog 28 5.0
sp|O35118|GFRA3_MOUSE GDNF family receptor alpha 3 precurso... 28 5.0
sp|P18106|FPS_DROME Tyrosine-protein kinase Fps85D (dFer) 28 5.0
sp|P71408|FTSH_HELPY Cell division protein ftsH homolog 28 5.0
sp|Q9EPI8|MTERF_RAT Transcription termination factor, mitoc... 28 6.6
sp|Q84WD3|DRL26_ARATH Probable disease resistance protein A... 28 8.6
>sp|Q8A455|SYE_BACTN Glutamyl-tRNA synthetase (Glutamate--tRNA ligase) (GluRS)
Length = 504
Score = 30.8 bits (68), Expect = 1.0
Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = +1
Query: 28 FLRPAYMSKKITKSDYKEIMKRCVTKISR--SGVTEINTEKIEKFVLSYV 171
F+ PA +K K +KE +C+T+++ +G+ + + E EK V+ ++
Sbjct: 404 FVAPAEYDEKTVKKRWKEDSAKCMTELAEVIAGIEDFSIEGQEKVVMDWI 453
>sp|Q64NI3|SYE_BACFR Glutamyl-tRNA synthetase (Glutamate--tRNA ligase) (GluRS)
Length = 505
Score = 29.6 bits (65), Expect = 2.3
Identities = 13/50 (26%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +1
Query: 28 FLRPAYMSKKITKSDYKEIMKRCVTKISR--SGVTEINTEKIEKFVLSYV 171
F+ P +K K +KE +C+T+++ +G+ + + E EK V+ ++
Sbjct: 405 FVAPTEYDEKTVKKRWKEDSAKCMTELAEVLAGIEDFSIEGQEKIVMDWI 454
>sp|P20592|MX2_HUMAN Interferon-induced GTP-binding protein Mx2 (Interferon-regulated
resistance GTP-binding protein MxB) (p78-related
protein)
Length = 715
Score = 29.3 bits (64), Expect = 2.9
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +1
Query: 118 GVTEINTEKIEKFVLSYVDKYRKFRRGKQ-HGVVSSSEHELVM 243
G+ NT+K++ + V+KY K RGK+ G V+ E+++
Sbjct: 463 GILATNTQKVKNIIHEEVEKYEKQYRGKELLGFVNYKTFEIIV 505
>sp|Q9ZM66|FTSH_HELPJ Cell division protein ftsH homolog
Length = 632
Score = 28.9 bits (63), Expect = 3.8
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +1
Query: 1 ERIALEVKNFLRPAYMSKKITKSDYKEIMKRCVTKISRSGVTEINTEKIEKFVLSY 168
E + L +KN L Y K T SDY+E ++ V ++ V I E++ + + Y
Sbjct: 561 EEMDLFIKNLLEERYQHVKQTLSDYREAIEIMVKELFDKEV--ITGERVREIISEY 614
>sp|O32617|FTSH_HELFE Cell division protein ftsH homolog
Length = 638
Score = 28.5 bits (62), Expect = 5.0
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +1
Query: 19 VKNFLRPAYMSKKITKSDYKEIMKRCVTKISRSGVTEINTEKIEKFVLSY 168
+KN L Y+ K T SDYK+ ++ V ++ V I E++ + + Y
Sbjct: 573 IKNLLEERYVHVKQTLSDYKDAIEVMVNELFEKEV--ITGERVREIISEY 620
>sp|O35118|GFRA3_MOUSE GDNF family receptor alpha 3 precursor (GFR-alpha 3) (GFRalpha3)
Length = 397
Score = 28.5 bits (62), Expect = 5.0
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -3
Query: 257 RSKHHITSSCSLDDTTPCCLPLRNF 183
R ++ I SC+L TP CL LR+F
Sbjct: 227 RRRNTIAPSCALPSVTPNCLDLRSF 251
>sp|P18106|FPS_DROME Tyrosine-protein kinase Fps85D (dFer)
Length = 1325
Score = 28.5 bits (62), Expect = 5.0
Identities = 20/55 (36%), Positives = 24/55 (43%)
Frame = +1
Query: 1 ERIALEVKNFLRPAYMSKKITKSDYKEIMKRCVTKISRSGVTEINTEKIEKFVLS 165
E L +N L+ A +T YKEI KR T I TE E EK+ S
Sbjct: 221 ESFILLWRNILQEAAQYGDLTADKYKEIQKRIDTVIGSINPTEEYGEFTEKYKTS 275
>sp|P71408|FTSH_HELPY Cell division protein ftsH homolog
Length = 632
Score = 28.5 bits (62), Expect = 5.0
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +1
Query: 1 ERIALEVKNFLRPAYMSKKITKSDYKEIMKRCVTKISRSGVTEINTEKIEKFVLSY 168
E + L +KN L Y K T SDY+E ++ V ++ V I E++ + + Y
Sbjct: 561 EEMDLFIKNLLEERYKHVKQTLSDYREAIEIMVKELFDKEV--ITGERVREIISEY 614
>sp|Q9EPI8|MTERF_RAT Transcription termination factor, mitochondrial precursor (mTERF)
(Mitochondrial transcription termination factor 1)
Length = 374
Score = 28.1 bits (61), Expect = 6.6
Identities = 17/43 (39%), Positives = 26/43 (60%)
Frame = +1
Query: 46 MSKKITKSDYKEIMKRCVTKISRSGVTEINTEKIEKFVLSYVD 174
+S TK +Y I KR ++ G TE E+++KFVLSY++
Sbjct: 261 LSNDCTKRNYTNIKKRLLSL----GCTE---EEVQKFVLSYLN 296
>sp|Q84WD3|DRL26_ARATH Probable disease resistance protein At4g19060
Length = 383
Score = 27.7 bits (60), Expect = 8.6
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +1
Query: 79 EIMKRCVTKISRSGVTEINTEK-IEKFVLSYVDKYRKFRRGKQHGVVSSSEH 231
+I K+ +++I ++ +K +EK S+ ++Y K+ GKQ G SSS+H
Sbjct: 2 DIAKKFISEIDDKLESKSEFDKELEKIKSSFNEEYEKWSSGKQRG--SSSKH 51
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,419,202
Number of Sequences: 369166
Number of extensions: 600361
Number of successful extensions: 1504
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1504
length of database: 68,354,980
effective HSP length: 72
effective length of database: 55,054,060
effective search space used: 1706675860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)