Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_E15
(989 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8R4H2|ARHGC_MOUSE Rho guanine nucleotide exchange facto... 32 3.6
sp|Q9NZN5|ARHGC_HUMAN Rho guanine nucleotide exchange facto... 32 3.6
>sp|Q8R4H2|ARHGC_MOUSE Rho guanine nucleotide exchange factor 12 (Leukemia-associated
RhoGEF)
Length = 1543
Score = 31.6 bits (70), Expect = 3.6
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +3
Query: 894 IICFYYFDLCKTIIINDKETRKLMNEFVEFFL 989
++C+ Y DL K N KETR++ EF +FFL
Sbjct: 401 LLCYLYSDLYKQT--NSKETRRVFLEFHQFFL 430
>sp|Q9NZN5|ARHGC_HUMAN Rho guanine nucleotide exchange factor 12 (Leukemia-associated
RhoGEF)
Length = 1544
Score = 31.6 bits (70), Expect = 3.6
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +3
Query: 894 IICFYYFDLCKTIIINDKETRKLMNEFVEFFL 989
++C+ Y DL K N KETR++ EF +FFL
Sbjct: 401 LLCYLYSDLYKHT--NSKETRRIFLEFHQFFL 430
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,574,404
Number of Sequences: 369166
Number of extensions: 2111342
Number of successful extensions: 4176
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4175
length of database: 68,354,980
effective HSP length: 111
effective length of database: 47,849,395
effective search space used: 10431168110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)