Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_E01
(445 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q91240|TBB_PSEAM Tubulin beta chain (Beta tubulin) 217 1e-56
sp|P11833|TBB_PARLI Tubulin beta chain (Beta tubulin) 216 1e-56
sp|P30883|TBB4_XENLA Tubulin beta-4 chain 216 1e-56
sp|P09206|TBB3_CHICK Tubulin beta-3 chain (Beta-tubulin cla... 216 1e-56
sp|P02554|TBB_PIG Tubulin beta chain 216 1e-56
sp|P68372|TBBX_MOUSE Tubulin beta-? chain >gi|55977480|sp|P... 216 1e-56
sp|P18700|TBB_STRPU Tubulin beta chain (Beta tubulin) 216 1e-56
sp|P32882|TBB2_CHICK Tubulin beta-2 chain (Beta-tubulin cla... 216 1e-56
sp|P02556|TBB_LYTPI Tubulin beta chain (Beta tubulin) 216 1e-56
sp|P09203|TBB1_CHICK Tubulin beta-1 chain (Beta-tubulin cla... 216 1e-56
>sp|Q91240|TBB_PSEAM Tubulin beta chain (Beta tubulin)
Length = 445
Score = 217 bits (552), Expect = 1e-56
Identities = 105/110 (95%), Positives = 108/110 (98%)
Frame = +1
Query: 1 RGRMSVKEVDEQMLNVRNKNSSYFVEWIPNNVKTGVWDIPPRGLKMSSTFIGNSTAIQEL 180
RGRMS+KEVDEQMLNV+NKNSSYFVEWIPNNVKT V DIPPRGLKMSSTFIGNSTAIQEL
Sbjct: 318 RGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSSTFIGNSTAIQEL 377
Query: 181 FKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD 330
FKR+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD
Sbjct: 378 FKRMSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD 427
>sp|P11833|TBB_PARLI Tubulin beta chain (Beta tubulin)
Length = 447
Score = 216 bits (551), Expect = 1e-56
Identities = 104/110 (94%), Positives = 108/110 (98%)
Frame = +1
Query: 1 RGRMSVKEVDEQMLNVRNKNSSYFVEWIPNNVKTGVWDIPPRGLKMSSTFIGNSTAIQEL 180
RGRMS+KEVDEQMLNV+NKNSSYFVEWIPNNVKT V DIPPRGLKMS+TFIGNSTAIQEL
Sbjct: 318 RGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQEL 377
Query: 181 FKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD 330
FKR+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD
Sbjct: 378 FKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD 427
>sp|P30883|TBB4_XENLA Tubulin beta-4 chain
Length = 445
Score = 216 bits (551), Expect = 1e-56
Identities = 104/110 (94%), Positives = 108/110 (98%)
Frame = +1
Query: 1 RGRMSVKEVDEQMLNVRNKNSSYFVEWIPNNVKTGVWDIPPRGLKMSSTFIGNSTAIQEL 180
RGRMS+KEVDEQMLNV+NKNSSYFVEWIPNNVKT V DIPPRGLKMS+TFIGNSTAIQEL
Sbjct: 318 RGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQEL 377
Query: 181 FKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD 330
FKR+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD
Sbjct: 378 FKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD 427
>sp|P09206|TBB3_CHICK Tubulin beta-3 chain (Beta-tubulin class-IV)
Length = 445
Score = 216 bits (551), Expect = 1e-56
Identities = 104/110 (94%), Positives = 108/110 (98%)
Frame = +1
Query: 1 RGRMSVKEVDEQMLNVRNKNSSYFVEWIPNNVKTGVWDIPPRGLKMSSTFIGNSTAIQEL 180
RGRMS+KEVDEQMLNV+NKNSSYFVEWIPNNVKT V DIPPRGLKMS+TFIGNSTAIQEL
Sbjct: 318 RGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQEL 377
Query: 181 FKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD 330
FKR+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD
Sbjct: 378 FKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD 427
>sp|P02554|TBB_PIG Tubulin beta chain
Length = 445
Score = 216 bits (551), Expect = 1e-56
Identities = 104/110 (94%), Positives = 108/110 (98%)
Frame = +1
Query: 1 RGRMSVKEVDEQMLNVRNKNSSYFVEWIPNNVKTGVWDIPPRGLKMSSTFIGNSTAIQEL 180
RGRMS+KEVDEQMLNV+NKNSSYFVEWIPNNVKT V DIPPRGLKMS+TFIGNSTAIQEL
Sbjct: 318 RGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQEL 377
Query: 181 FKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD 330
FKR+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD
Sbjct: 378 FKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD 427
>sp|P68372|TBBX_MOUSE Tubulin beta-? chain
sp|P68371|TBBX_HUMAN Tubulin beta-? chain (Tubulin beta-2 chain)
Length = 445
Score = 216 bits (551), Expect = 1e-56
Identities = 104/110 (94%), Positives = 108/110 (98%)
Frame = +1
Query: 1 RGRMSVKEVDEQMLNVRNKNSSYFVEWIPNNVKTGVWDIPPRGLKMSSTFIGNSTAIQEL 180
RGRMS+KEVDEQMLNV+NKNSSYFVEWIPNNVKT V DIPPRGLKMS+TFIGNSTAIQEL
Sbjct: 318 RGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQEL 377
Query: 181 FKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD 330
FKR+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD
Sbjct: 378 FKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD 427
>sp|P18700|TBB_STRPU Tubulin beta chain (Beta tubulin)
Length = 292
Score = 216 bits (551), Expect = 1e-56
Identities = 104/110 (94%), Positives = 108/110 (98%)
Frame = +1
Query: 1 RGRMSVKEVDEQMLNVRNKNSSYFVEWIPNNVKTGVWDIPPRGLKMSSTFIGNSTAIQEL 180
RGRMS+KEVDEQMLNV+NKNSSYFVEWIPNNVKT V DIPPRGLKMS+TFIGNSTAIQEL
Sbjct: 163 RGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQEL 222
Query: 181 FKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD 330
FKR+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD
Sbjct: 223 FKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD 272
>sp|P32882|TBB2_CHICK Tubulin beta-2 chain (Beta-tubulin class-II)
Length = 445
Score = 216 bits (551), Expect = 1e-56
Identities = 104/110 (94%), Positives = 108/110 (98%)
Frame = +1
Query: 1 RGRMSVKEVDEQMLNVRNKNSSYFVEWIPNNVKTGVWDIPPRGLKMSSTFIGNSTAIQEL 180
RGRMS+KEVDEQMLNV+NKNSSYFVEWIPNNVKT V DIPPRGLKMS+TFIGNSTAIQEL
Sbjct: 318 RGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQEL 377
Query: 181 FKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD 330
FKR+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD
Sbjct: 378 FKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD 427
>sp|P02556|TBB_LYTPI Tubulin beta chain (Beta tubulin)
Length = 177
Score = 216 bits (551), Expect = 1e-56
Identities = 104/110 (94%), Positives = 108/110 (98%)
Frame = +1
Query: 1 RGRMSVKEVDEQMLNVRNKNSSYFVEWIPNNVKTGVWDIPPRGLKMSSTFIGNSTAIQEL 180
RGRMS+KEVDEQMLNV+NKNSSYFVEWIPNNVKT V DIPPRGLKMS+TFIGNSTAIQEL
Sbjct: 49 RGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQEL 108
Query: 181 FKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD 330
FKR+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD
Sbjct: 109 FKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD 158
>sp|P09203|TBB1_CHICK Tubulin beta-1 chain (Beta-tubulin class-I)
Length = 445
Score = 216 bits (551), Expect = 1e-56
Identities = 104/110 (94%), Positives = 108/110 (98%)
Frame = +1
Query: 1 RGRMSVKEVDEQMLNVRNKNSSYFVEWIPNNVKTGVWDIPPRGLKMSSTFIGNSTAIQEL 180
RGRMS+KEVDEQMLNV+NKNSSYFVEWIPNNVKT V DIPPRGLKMS+TFIGNSTAIQEL
Sbjct: 318 RGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQEL 377
Query: 181 FKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD 330
FKR+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD
Sbjct: 378 FKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD 427
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,693,762
Number of Sequences: 369166
Number of extensions: 669364
Number of successful extensions: 2433
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2315
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2344429560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)