Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_D17
(800 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P51469|G3P_XENLA Glyceraldehyde-3-phosphate dehydrogenas... 326 5e-89
sp|Q9N2D5|G3P_FELCA Glyceraldehyde-3-phosphate dehydrogenas... 325 7e-89
sp|O57479|G3P_COLLI Glyceraldehyde-3-phosphate dehydrogenas... 324 2e-88
sp|P00355|G3P_PIG Glyceraldehyde-3-phosphate dehydrogenase ... 323 3e-88
sp|Q05025|G3P_COTJA Glyceraldehyde-3-phosphate dehydrogenas... 323 4e-88
sp|Q28259|G3P_CANFA Glyceraldehyde-3-phosphate dehydrogenas... 322 7e-88
sp|P00356|G3P_CHICK Glyceraldehyde-3-phosphate dehydrogenas... 321 2e-87
sp|P46406|G3P_RABIT Glyceraldehyde-3-phosphate dehydrogenas... 320 3e-87
sp|Q28554|G3P_SHEEP Glyceraldehyde-3-phosphate dehydrogenas... 320 3e-87
sp|P16858|G3P_MOUSE Glyceraldehyde-3-phosphate dehydrogenas... 319 5e-87
>sp|P51469|G3P_XENLA Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 326 bits (835), Expect = 5e-89
Identities = 160/219 (73%), Positives = 183/219 (83%)
Frame = +2
Query: 35 KRSLSHAPSADAPMFVMGVNHEKYDPSLSIVSNASCTTNCLAPLAKVVNDHFGIEEGLMT 214
KR + APSADAPMFV+GVNHEKY+ SL +VSNASCTTNCLAPLAKV+ND+FGI EGLMT
Sbjct: 115 KRVVISAPSADAPMFVVGVNHEKYENSLKVVSNASCTTNCLAPLAKVINDNFGIVEGLMT 174
Query: 215 TIHAYTATQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVP 394
T+HA+TATQKTVDGPS KLWRDGRGA QNIIP IPELNGKITGMAFRVP
Sbjct: 175 TVHAFTATQKTVDGPSGKLWRDGRGAGQNIIPASTGAAKAVGKVIPELNGKITGMAFRVP 234
Query: 395 VPDVSVVDLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFD 574
P+VSVVDLTC+L+K AKYD+IKAAIK ASE MKGIL YT+++VVS DF GD +SSIFD
Sbjct: 235 TPNVSVVDLTCRLQKPAKYDDIKAAIKTASEGPMKGILGYTQDQVVSTDFNGDTHSSIFD 294
Query: 575 AKAGIQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 691
A AGI L + FVKLV+WYDNE GYS RV+DL+ HM++K+
Sbjct: 295 ADAGIALNENFVKLVSWYDNECGYSNRVVDLVCHMASKE 333
>sp|Q9N2D5|G3P_FELCA Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 325 bits (834), Expect = 7e-89
Identities = 159/219 (72%), Positives = 181/219 (82%)
Frame = +2
Query: 35 KRSLSHAPSADAPMFVMGVNHEKYDPSLSIVSNASCTTNCLAPLAKVVNDHFGIEEGLMT 214
KR + APSADAPMFVMGVNHEKYD SL IVSNASCTTNCLAPLAKV++DHFGI EGLMT
Sbjct: 115 KRVIISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMT 174
Query: 215 TIHAYTATQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVP 394
T+HA TATQKTVDGPS KLWRDGRGAAQNIIP IPELNGK+TGMAFRVP
Sbjct: 175 TVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVP 234
Query: 395 VPDVSVVDLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFD 574
P+VSVVDLTC+L+KAAKYD+IK +K ASE +KGIL YTE++VVS DF D +SS FD
Sbjct: 235 TPNVSVVDLTCRLEKAAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFD 294
Query: 575 AKAGIQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 691
A AGI L D FVKL++WYDNE+GYS RV+DL+ HM++K+
Sbjct: 295 AGAGIALNDHFVKLISWYDNEFGYSNRVVDLMAHMASKE 333
>sp|O57479|G3P_COLLI Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 324 bits (830), Expect = 2e-88
Identities = 159/219 (72%), Positives = 182/219 (83%)
Frame = +2
Query: 35 KRSLSHAPSADAPMFVMGVNHEKYDPSLSIVSNASCTTNCLAPLAKVVNDHFGIEEGLMT 214
KR + APSADAPMFVMGVNHEKYD SL IVSNASCTTNCLAPLAKV++D+FGI EGLMT
Sbjct: 115 KRVIISAPSADAPMFVMGVNHEKYDKSLKIVSNASCTTNCLAPLAKVIHDNFGIVEGLMT 174
Query: 215 TIHAYTATQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVP 394
T+HA TATQKTVDGPS KLWRDGRGAAQNIIP IPELNGK+TGMAFRVP
Sbjct: 175 TVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVP 234
Query: 395 VPDVSVVDLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFD 574
P+VSVVDLTC+L+K AKYD+IK +K A++ +KGILAYTE++VVS DF GD +SS FD
Sbjct: 235 TPNVSVVDLTCRLEKPAKYDDIKRVVKAAADGPLKGILAYTEDQVVSCDFNGDSHSSTFD 294
Query: 575 AKAGIQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 691
A AGI L D FVKLV+WYDNEYGYS RV+DL+ HM++K+
Sbjct: 295 AGAGIALNDHFVKLVSWYDNEYGYSNRVVDLMVHMASKE 333
>sp|P00355|G3P_PIG Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 323 bits (828), Expect = 3e-88
Identities = 158/219 (72%), Positives = 180/219 (82%)
Frame = +2
Query: 35 KRSLSHAPSADAPMFVMGVNHEKYDPSLSIVSNASCTTNCLAPLAKVVNDHFGIEEGLMT 214
KR + APSADAPMFVMGVNHEKYD SL IVSNASCTTNCLAPLAKV++DHFGI EGLMT
Sbjct: 115 KRVIISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMT 174
Query: 215 TIHAYTATQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVP 394
T+HA TATQKTVDGPS KLWRDGRGAAQNIIP IPELNGK+TGMAFRVP
Sbjct: 175 TVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVP 234
Query: 395 VPDVSVVDLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFD 574
P+VSVVDLTC+L+K AKYD+IK +K ASE +KGIL YTE++VVS DF D +SS FD
Sbjct: 235 TPNVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFD 294
Query: 575 AKAGIQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 691
A AGI L D FVKL++WYDNE+GYS RV+DL+ HM++K+
Sbjct: 295 AGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 333
>sp|Q05025|G3P_COTJA Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 323 bits (827), Expect = 4e-88
Identities = 158/219 (72%), Positives = 181/219 (82%)
Frame = +2
Query: 35 KRSLSHAPSADAPMFVMGVNHEKYDPSLSIVSNASCTTNCLAPLAKVVNDHFGIEEGLMT 214
KR + APSADAPMFVMGVNHEKYD SL IVSNASCTTNCLAPLAKV++D+FGI EGLMT
Sbjct: 115 KRVIISAPSADAPMFVMGVNHEKYDKSLKIVSNASCTTNCLAPLAKVIHDNFGIVEGLMT 174
Query: 215 TIHAYTATQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVP 394
T+HA TATQKTVDGPS KLWRDGRGAAQNIIP IPELNGK+TGMAFRVP
Sbjct: 175 TVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVP 234
Query: 395 VPDVSVVDLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFD 574
P+VSVVDLTC+L+K AKYD+IK +K A+E +KGIL YTE++VVS DF GD +SS FD
Sbjct: 235 TPNVSVVDLTCRLEKPAKYDDIKRVVKAAAEGPLKGILGYTEDQVVSCDFNGDSHSSTFD 294
Query: 575 AKAGIQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 691
A AGI L D FVKLV+WYDNE+GYS RV+DL+ HM++K+
Sbjct: 295 AGAGIALNDNFVKLVSWYDNEFGYSNRVVDLMVHMASKE 333
>sp|Q28259|G3P_CANFA Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 322 bits (825), Expect = 7e-88
Identities = 157/219 (71%), Positives = 181/219 (82%)
Frame = +2
Query: 35 KRSLSHAPSADAPMFVMGVNHEKYDPSLSIVSNASCTTNCLAPLAKVVNDHFGIEEGLMT 214
KR + APSADAPMFVMGVNHEKYD SL IVSNASCTTNCLAPLAKV++DHFGI EGLMT
Sbjct: 115 KRVIISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMT 174
Query: 215 TIHAYTATQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVP 394
T+HA TATQKTVDGPS K+WRDGRGAAQNIIP IPELNGK+TGMAFRVP
Sbjct: 175 TVHAITATQKTVDGPSGKMWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVP 234
Query: 395 VPDVSVVDLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFD 574
P+VSVVDLTC+L+KAAKYD+IK +K ASE +KGIL YTE++VVS DF D +SS FD
Sbjct: 235 TPNVSVVDLTCRLEKAAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFD 294
Query: 575 AKAGIQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 691
A AGI L D FVKL++WYDNE+GYS RV+DL+ +M++K+
Sbjct: 295 AGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVYMASKE 333
>sp|P00356|G3P_CHICK Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 321 bits (822), Expect = 2e-87
Identities = 157/219 (71%), Positives = 181/219 (82%)
Frame = +2
Query: 35 KRSLSHAPSADAPMFVMGVNHEKYDPSLSIVSNASCTTNCLAPLAKVVNDHFGIEEGLMT 214
KR + APSADAPMFVMGVNHEKYD SL IVSNASCTTNCLAPLAKV++D+FGI EGLMT
Sbjct: 115 KRVIISAPSADAPMFVMGVNHEKYDKSLKIVSNASCTTNCLAPLAKVIHDNFGIVEGLMT 174
Query: 215 TIHAYTATQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVP 394
T+HA TATQKTVDGPS KLWRDGRGAAQNIIP IPELNGK+TGMAFRVP
Sbjct: 175 TVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVP 234
Query: 395 VPDVSVVDLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFD 574
P+VSVVDLTC+L+K AKYD+IK +K A++ +KGIL YTE++VVS DF GD +SS FD
Sbjct: 235 TPNVSVVDLTCRLEKPAKYDDIKRVVKAAADGPLKGILGYTEDQVVSCDFNGDSHSSTFD 294
Query: 575 AKAGIQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 691
A AGI L D FVKLV+WYDNE+GYS RV+DL+ HM++K+
Sbjct: 295 AGAGIALNDHFVKLVSWYDNEFGYSNRVVDLMVHMASKE 333
>sp|P46406|G3P_RABIT Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 320 bits (820), Expect = 3e-87
Identities = 157/219 (71%), Positives = 179/219 (81%)
Frame = +2
Query: 35 KRSLSHAPSADAPMFVMGVNHEKYDPSLSIVSNASCTTNCLAPLAKVVNDHFGIEEGLMT 214
KR + APS DAPMFVMGVNHEKYD SL IVSNASCTTNCLAPLAKV++DHFGI EGLMT
Sbjct: 115 KRVIISAPSXDAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMT 174
Query: 215 TIHAYTATQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVP 394
T+HA TATQKTVDGPS KLWRDGRGAAQNIIP IPELNGK+TGMAFRVP
Sbjct: 175 TVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVP 234
Query: 395 VPDVSVVDLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFD 574
P+VSVVDLTC+L+KAAKYD+IK +K ASE +KGIL YTE++VVS DF +SS FD
Sbjct: 235 TPNVSVVDLTCRLEKAAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSATHSSTFD 294
Query: 575 AKAGIQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 691
A AGI L D FVKL++WYDNE+GYS RV+DL+ HM++K+
Sbjct: 295 AGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 333
>sp|Q28554|G3P_SHEEP Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 322
Score = 320 bits (820), Expect = 3e-87
Identities = 156/219 (71%), Positives = 180/219 (82%)
Frame = +2
Query: 35 KRSLSHAPSADAPMFVMGVNHEKYDPSLSIVSNASCTTNCLAPLAKVVNDHFGIEEGLMT 214
K+ + APSADAPMFVMGVNHEKY+ +L IVSNASCTTNCLAPLAKV++DHFGI EGLMT
Sbjct: 104 KKVIISAPSADAPMFVMGVNHEKYNNTLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMT 163
Query: 215 TIHAYTATQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVP 394
T+HA TATQKTVDGPS KLWRDGRGAAQNIIP IPELNGK+TGMAFRVP
Sbjct: 164 TVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVP 223
Query: 395 VPDVSVVDLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFD 574
P+VSVVDLTC+L+K AKYDEIK +K ASE +KGIL YTE++VVS DF D +SS FD
Sbjct: 224 TPNVSVVDLTCRLEKPAKYDEIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFD 283
Query: 575 AKAGIQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 691
A AGI L D FVKL++WYDNE+GYS RV+DL+ HM++K+
Sbjct: 284 AGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 322
>sp|P16858|G3P_MOUSE Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 319 bits (818), Expect = 5e-87
Identities = 156/219 (71%), Positives = 180/219 (82%)
Frame = +2
Query: 35 KRSLSHAPSADAPMFVMGVNHEKYDPSLSIVSNASCTTNCLAPLAKVVNDHFGIEEGLMT 214
KR + APSADAPMFVMGVNHEKYD SL IVSNASCTTNCLAPLAKV++D+FGI EGLMT
Sbjct: 115 KRVIISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDNFGIVEGLMT 174
Query: 215 TIHAYTATQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVP 394
T+HA TATQKTVDGPS KLWRDGRGAAQNIIP IPELNGK+TGMAFRVP
Sbjct: 175 TVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVP 234
Query: 395 VPDVSVVDLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFD 574
P+VSVVDLTC+L+K AKYD+IK +K ASE +KGIL YTE++VVS DF + +SS FD
Sbjct: 235 TPNVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSNSHSSTFD 294
Query: 575 AKAGIQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 691
A AGI L D FVKL++WYDNEYGYS RV+DL+ +M++K+
Sbjct: 295 AGAGIALNDNFVKLISWYDNEYGYSNRVVDLMAYMASKE 333
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,591,494
Number of Sequences: 369166
Number of extensions: 1730736
Number of successful extensions: 4530
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4328
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7570361805
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)