Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_D15
(928 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P63036|DNJA1_RAT DnaJ homolog subfamily A member 1 (DnaJ... 362 1e-99
sp|Q8WW22|DNJA4_HUMAN DnaJ homolog subfamily A member 4 361 1e-99
sp|P31689|DNJA1_HUMAN DnaJ homolog subfamily A member 1 (He... 360 2e-99
sp|Q9JMC3|DNJA4_MOUSE DnaJ homolog subfamily A member 4 (Mm... 359 5e-99
sp|O60884|DNJA2_HUMAN DnaJ homolog subfamily A member 2 (HI... 325 1e-88
sp|Q9QYJ0|DNJA2_MOUSE DnaJ homolog subfamily A member 2 (mDj3) 324 2e-88
sp|O35824|DNJA2_RAT DnaJ homolog subfamily A member 2 (RDJ2) 322 9e-88
sp|Q03363|DNJH1_ALLPO DnaJ protein homolog 1 (DNAJ-1) 298 1e-80
sp|P42824|DNJH2_ALLPO DnaJ protein homolog 2 293 6e-79
sp|Q04960|DNJH_CUCSA DnaJ protein homolog (DNAJ-1) 286 7e-77
>sp|P63036|DNJA1_RAT DnaJ homolog subfamily A member 1 (DnaJ-like protein 1)
sp|P63037|DNJA1_MOUSE DnaJ homolog subfamily A member 1 (Heat shock 40 kDa protein 4)
(DnaJ protein homolog 2) (HSJ-2)
Length = 397
Score = 362 bits (928), Expect = 1e-99
Identities = 170/296 (57%), Positives = 222/296 (75%)
Frame = +1
Query: 40 RKLICKLALKYHPDKNPDAGDKFKEISQAFEVLADPKKRQIYDDGGEQALKEGGGDSGFH 219
+K KLALKYHPDKNP+ G+KFK+ISQA+EVLAD KKR++YD GGEQA+KEGG GF
Sbjct: 23 KKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLADSKKRELYDKGGEQAIKEGGAGGGFG 82
Query: 220 NXXXXXXXXXXXXXXXXXXXXXXXXXVIHQLNVTLDELYKGNTRKLAIQKNVICDKCNGR 399
+ V+HQL+VTL++LY G TRKLA+QKNVICDKC GR
Sbjct: 83 SPMDIFDMFFGGGGRMQRERRGKN--VVHQLSVTLEDLYNGATRKLALQKNVICDKCEGR 140
Query: 400 GGKEGAVQKCNSCRGMGVEVHIRQLGPGMVQQMQTTCRTCKGEREVINERDRCKKCEGQK 579
GGK+GAV+ C +CRG G+++ I Q+GPGMVQQ+Q+ C C+G E I+ +DRCK C G+K
Sbjct: 141 GGKKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQSVCMECQGHGERISPKDRCKSCNGRK 200
Query: 580 VVREKKVLEVHIDKGMTDGQQIKFNGEGDQEPGLEPGDICIVLEEKPHNVFTRKKADLIY 759
+VREKK+LEVHIDKGM DGQ+I F+GEGDQEPGLEPGDI IVL++K H VFTR+ DL
Sbjct: 201 IVREKKILEVHIDKGMKDGQKITFHGEGDQEPGLEPGDIIIVLDQKDHAVFTRRGEDLFM 260
Query: 760 NMKLDLVDSLCGFKRTITTLDNRILVVETKPGEVIKNLEYRAIDNEGMPKYKSPFE 927
M + LV++LCGF++ I+TLDNR +V+ + PG+++K+ + + + NEGMP Y+ P+E
Sbjct: 261 CMDIQLVEALCGFQKPISTLDNRTIVITSHPGQIVKHGDIKCVLNEGMPIYRRPYE 316
>sp|Q8WW22|DNJA4_HUMAN DnaJ homolog subfamily A member 4
Length = 397
Score = 361 bits (927), Expect = 1e-99
Identities = 172/296 (58%), Positives = 222/296 (75%)
Frame = +1
Query: 40 RKLICKLALKYHPDKNPDAGDKFKEISQAFEVLADPKKRQIYDDGGEQALKEGGGDSGFH 219
+K KLALKYHPDKNPD G+KFK ISQA+EVL+DPKKR +YD GGEQA+KEGG S
Sbjct: 23 KKAYRKLALKYHPDKNPDEGEKFKLISQAYEVLSDPKKRDVYDQGGEQAIKEGGSGSPSF 82
Query: 220 NXXXXXXXXXXXXXXXXXXXXXXXXXVIHQLNVTLDELYKGNTRKLAIQKNVICDKCNGR 399
+ V+HQL+VTL++LY G T+KLA+QKNVIC+KC G
Sbjct: 83 SSPMDIFDMFFGGGGRMARERRGKN-VVHQLSVTLEDLYNGVTKKLALQKNVICEKCEGV 141
Query: 400 GGKEGAVQKCNSCRGMGVEVHIRQLGPGMVQQMQTTCRTCKGEREVINERDRCKKCEGQK 579
GGK+G+V+KC C+G G+++HI+Q+GPGMVQQ+QT C CKG+ E IN +DRC+ C G K
Sbjct: 142 GGKKGSVEKCPLCKGRGMQIHIQQIGPGMVQQIQTVCIECKGQGERINPKDRCESCSGAK 201
Query: 580 VVREKKVLEVHIDKGMTDGQQIKFNGEGDQEPGLEPGDICIVLEEKPHNVFTRKKADLIY 759
V+REKK++EVH++KGM DGQ+I F+GEGDQEP LEPGD+ IVL++K H+VF R+ DLI
Sbjct: 202 VIREKKIIEVHVEKGMKDGQKILFHGEGDQEPELEPGDVIIVLDQKDHSVFQRRGHDLIM 261
Query: 760 NMKLDLVDSLCGFKRTITTLDNRILVVETKPGEVIKNLEYRAIDNEGMPKYKSPFE 927
MK+ L ++LCGFK+TI TLDNRILV+ +K GEVIK+ + R + +EGMP YK+P E
Sbjct: 262 KMKIQLSEALCGFKKTIKTLDNRILVITSKAGEVIKHGDLRCVRDEGMPIYKAPLE 317
>sp|P31689|DNJA1_HUMAN DnaJ homolog subfamily A member 1 (Heat shock 40 kDa protein 4)
(DnaJ protein homolog 2) (HSJ-2) (HSDJ)
Length = 397
Score = 360 bits (925), Expect = 2e-99
Identities = 169/296 (57%), Positives = 222/296 (75%)
Frame = +1
Query: 40 RKLICKLALKYHPDKNPDAGDKFKEISQAFEVLADPKKRQIYDDGGEQALKEGGGDSGFH 219
+K KLALKYHPDKNP+ G+KFK+ISQA+EVL+D KKR++YD GGEQA+KEGG GF
Sbjct: 23 KKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYDKGGEQAIKEGGAGGGFG 82
Query: 220 NXXXXXXXXXXXXXXXXXXXXXXXXXVIHQLNVTLDELYKGNTRKLAIQKNVICDKCNGR 399
+ V+HQL+VTL++LY G TRKLA+QKNVICDKC GR
Sbjct: 83 SPMDIFDMFFGGGGRMQRERRGKN--VVHQLSVTLEDLYNGATRKLALQKNVICDKCEGR 140
Query: 400 GGKEGAVQKCNSCRGMGVEVHIRQLGPGMVQQMQTTCRTCKGEREVINERDRCKKCEGQK 579
GGK+GAV+ C +CRG G+++ I Q+GPGMVQQ+Q+ C C+G E I+ +DRCK C G+K
Sbjct: 141 GGKKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQSVCMECQGHGERISPKDRCKSCNGRK 200
Query: 580 VVREKKVLEVHIDKGMTDGQQIKFNGEGDQEPGLEPGDICIVLEEKPHNVFTRKKADLIY 759
+VREKK+LEVHIDKGM DGQ+I F+GEGDQEPGLEPGDI IVL++K H VFTR+ DL
Sbjct: 201 IVREKKILEVHIDKGMKDGQKITFHGEGDQEPGLEPGDIIIVLDQKDHAVFTRRGEDLFM 260
Query: 760 NMKLDLVDSLCGFKRTITTLDNRILVVETKPGEVIKNLEYRAIDNEGMPKYKSPFE 927
M + LV++LCGF++ I+TLDNR +V+ + PG+++K+ + + + NEGMP Y+ P+E
Sbjct: 261 CMDIQLVEALCGFQKPISTLDNRTIVITSHPGQIVKHGDIKCVLNEGMPIYRRPYE 316
>sp|Q9JMC3|DNJA4_MOUSE DnaJ homolog subfamily A member 4 (MmDjA4)
Length = 397
Score = 359 bits (922), Expect = 5e-99
Identities = 172/296 (58%), Positives = 221/296 (74%)
Frame = +1
Query: 40 RKLICKLALKYHPDKNPDAGDKFKEISQAFEVLADPKKRQIYDDGGEQALKEGGGDSGFH 219
+K KLALKYHPDKNPD G+KFK ISQA+EVL+DPKKR IYD GGEQA+KEGG S
Sbjct: 23 KKAYRKLALKYHPDKNPDEGEKFKLISQAYEVLSDPKKRDIYDQGGEQAIKEGGSGSPSF 82
Query: 220 NXXXXXXXXXXXXXXXXXXXXXXXXXVIHQLNVTLDELYKGNTRKLAIQKNVICDKCNGR 399
+ V+HQL+VTL++LY G T+KLA+QKNVIC+KC G
Sbjct: 83 SSPMDIFDMFFGGGGRMTRERRGKN-VVHQLSVTLEDLYNGITKKLALQKNVICEKCEGI 141
Query: 400 GGKEGAVQKCNSCRGMGVEVHIRQLGPGMVQQMQTTCRTCKGEREVINERDRCKKCEGQK 579
GGK+G+V+KC C+G G++VHI+Q+GPGMVQQ+QT C CKG+ E IN +DRC+ C G K
Sbjct: 142 GGKKGSVEKCPLCKGRGMQVHIQQIGPGMVQQIQTVCIECKGQGERINPKDRCENCSGAK 201
Query: 580 VVREKKVLEVHIDKGMTDGQQIKFNGEGDQEPGLEPGDICIVLEEKPHNVFTRKKADLIY 759
V REKK++EVH++KGM DGQ+I F+GEGDQEP L+PGD+ IVL++K H+VF R+ DLI
Sbjct: 202 VTREKKIIEVHVEKGMKDGQKILFHGEGDQEPELDPGDVIIVLDQKDHSVFQRRGQDLIM 261
Query: 760 NMKLDLVDSLCGFKRTITTLDNRILVVETKPGEVIKNLEYRAIDNEGMPKYKSPFE 927
MK+ L ++LCGFK+TI TLD+R+LV+ +K GEVIK+ + + I NEGMP YK+P E
Sbjct: 262 KMKIQLSEALCGFKKTIKTLDDRVLVISSKSGEVIKHGDLKCIRNEGMPIYKAPLE 317
>sp|O60884|DNJA2_HUMAN DnaJ homolog subfamily A member 2 (HIRA interacting protein 4)
(Cell cycle progression restoration gene 3 protein)
(Dnj3)
Length = 412
Score = 325 bits (832), Expect = 1e-88
Identities = 159/301 (52%), Positives = 206/301 (68%), Gaps = 5/301 (1%)
Frame = +1
Query: 40 RKLICKLALKYHPDKNPDAGDKFKEISQAFEVLADPKKRQIYDDGGEQALKEGGGDSG-- 213
+K KLA +YHPDKNP+AGDKFKEIS A+EVL++P+KR++YD GEQ L+EG G G
Sbjct: 25 KKAYRKLAKEYHPDKNPNAGDKFKEISFAYEVLSNPEKRELYDRYGEQGLREGSGGGGGM 84
Query: 214 ---FHNXXXXXXXXXXXXXXXXXXXXXXXXXVIHQLNVTLDELYKGNTRKLAIQKNVICD 384
F + ++H L V+L++LY G T KL + KNV+C
Sbjct: 85 DDIFSHIFGGGLFGFMGNQSRSRNGRRRGEDMMHPLKVSLEDLYNGKTTKLQLSKNVLCS 144
Query: 385 KCNGRGGKEGAVQKCNSCRGMGVEVHIRQLGPGMVQQMQTTCRTCKGEREVINERDRCKK 564
C+G+GGK GAVQKC++CRG GV + IRQL PGMVQQMQ+ C C GE EVINE+DRCKK
Sbjct: 145 ACSGQGGKSGAVQKCSACRGRGVRIMIRQLAPGMVQQMQSVCSDCNGEGEVINEKDRCKK 204
Query: 565 CEGQKVVREKKVLEVHIDKGMTDGQQIKFNGEGDQEPGLEPGDICIVLEEKPHNVFTRKK 744
CEG+KV++E K+LEVH+DKGM GQ+I F GE DQ PG+EPGDI ++L+EK H VF R
Sbjct: 205 CEGKKVIKEVKILEVHVDKGMKHGQRITFTGEADQAPGVEPGDIVLLLQEKEHEVFQRDG 264
Query: 745 ADLIYNMKLDLVDSLCGFKRTITTLDNRILVVETKPGEVIKNLEYRAIDNEGMPKYKSPF 924
DL K+ LV++LCGF+ T LD R +VV+ PG+VI+ R + EGMP+Y++PF
Sbjct: 265 NDLHMTYKIGLVEALCGFQFTFKHLDGRQIVVKYPPGKVIEPGCVRVVRGEGMPQYRNPF 324
Query: 925 E 927
E
Sbjct: 325 E 325
>sp|Q9QYJ0|DNJA2_MOUSE DnaJ homolog subfamily A member 2 (mDj3)
Length = 412
Score = 324 bits (830), Expect = 2e-88
Identities = 159/301 (52%), Positives = 206/301 (68%), Gaps = 5/301 (1%)
Frame = +1
Query: 40 RKLICKLALKYHPDKNPDAGDKFKEISQAFEVLADPKKRQIYDDGGEQALKEGGGDSG-- 213
+K KLA +YHPDKNP+AGDKFKEIS A+EVL++P+KR++YD GEQ L+EG G G
Sbjct: 25 KKAYRKLAKEYHPDKNPNAGDKFKEISFAYEVLSNPEKRELYDRYGEQGLREGSGGGGGM 84
Query: 214 ---FHNXXXXXXXXXXXXXXXXXXXXXXXXXVIHQLNVTLDELYKGNTRKLAIQKNVICD 384
F + ++H L V+L++LY G T KL + KNV+C
Sbjct: 85 DDIFSHIFGGGLFGFMGNQSRSRNGRRRGEDMMHPLKVSLEDLYNGKTTKLQLSKNVLCS 144
Query: 385 KCNGRGGKEGAVQKCNSCRGMGVEVHIRQLGPGMVQQMQTTCRTCKGEREVINERDRCKK 564
C+G+GGK GAVQKC++CRG GV + IRQL PGMVQQMQ+ C C GE EVINE+DRCKK
Sbjct: 145 ACSGQGGKSGAVQKCSACRGRGVRIMIRQLAPGMVQQMQSVCSDCNGEGEVINEKDRCKK 204
Query: 565 CEGQKVVREKKVLEVHIDKGMTDGQQIKFNGEGDQEPGLEPGDICIVLEEKPHNVFTRKK 744
CEG+KV++E K+LEVH+DKGM GQ+I F GE DQ PG+EPGDI ++L+EK H VF R
Sbjct: 205 CEGKKVIKEVKILEVHVDKGMKHGQRITFTGEADQAPGVEPGDIVLLLQEKEHEVFQRDG 264
Query: 745 ADLIYNMKLDLVDSLCGFKRTITTLDNRILVVETKPGEVIKNLEYRAIDNEGMPKYKSPF 924
DL K+ LV++LCGF+ T LD R +VV+ PG+VI+ R + EGMP+Y++PF
Sbjct: 265 NDLHMTYKIGLVEALCGFQFTFKHLDARQIVVKYPPGKVIEPGCVRVVRGEGMPQYRNPF 324
Query: 925 E 927
E
Sbjct: 325 E 325
>sp|O35824|DNJA2_RAT DnaJ homolog subfamily A member 2 (RDJ2)
Length = 412
Score = 322 bits (825), Expect = 9e-88
Identities = 158/301 (52%), Positives = 205/301 (68%), Gaps = 5/301 (1%)
Frame = +1
Query: 40 RKLICKLALKYHPDKNPDAGDKFKEISQAFEVLADPKKRQIYDDGGEQALKEGGGDSG-- 213
+K KLA +YHPDKNP+AGDKFKEIS A+EVL++P+KR++YD GEQ L+EG G G
Sbjct: 25 KKAYRKLAKEYHPDKNPNAGDKFKEISFAYEVLSNPEKRELYDRYGEQGLREGSGGGGGM 84
Query: 214 ---FHNXXXXXXXXXXXXXXXXXXXXXXXXXVIHQLNVTLDELYKGNTRKLAIQKNVICD 384
F + ++H L V+L++LY G T KL + KNV+C
Sbjct: 85 DDIFSHIFGGGLFGFMGNQSRSRNGRRRGEDMMHPLKVSLEDLYNGKTTKLQLSKNVLCS 144
Query: 385 KCNGRGGKEGAVQKCNSCRGMGVEVHIRQLGPGMVQQMQTTCRTCKGEREVINERDRCKK 564
C+G+GGK GAVQKC++CRG GV + IRQL PGMVQQMQ+ C C GE EVINE+DRCKK
Sbjct: 145 ACSGQGGKSGAVQKCSACRGRGVRIMIRQLAPGMVQQMQSVCSDCNGEGEVINEKDRCKK 204
Query: 565 CEGQKVVREKKVLEVHIDKGMTDGQQIKFNGEGDQEPGLEPGDICIVLEEKPHNVFTRKK 744
CEG+KV++E K+LEVH+DKGM GQ+I F GE DQ PG+EPGDI + ++EK H VF R
Sbjct: 205 CEGKKVIKEVKILEVHVDKGMKHGQRITFTGEADQAPGVEPGDIVLFVQEKEHEVFQRDG 264
Query: 745 ADLIYNMKLDLVDSLCGFKRTITTLDNRILVVETKPGEVIKNLEYRAIDNEGMPKYKSPF 924
DL K+ LV++LCGF+ T LD R +VV+ PG+VI+ R + EGMP+Y++PF
Sbjct: 265 NDLHMTYKIGLVEALCGFQFTFKHLDARQIVVKYPPGKVIEPGCVRVVRGEGMPQYRNPF 324
Query: 925 E 927
E
Sbjct: 325 E 325
>sp|Q03363|DNJH1_ALLPO DnaJ protein homolog 1 (DNAJ-1)
Length = 397
Score = 298 bits (763), Expect = 1e-80
Identities = 148/301 (49%), Positives = 201/301 (66%), Gaps = 6/301 (1%)
Frame = +1
Query: 40 RKLICKLALKYHPDKNPDAGDKFKEISQAFEVLADPKKRQIYDDGGEQALKEG-GGDSGF 216
+K K A+K HPDK D +KFKE++QA++VL+DP+KR+IYD GE ALKEG GG G
Sbjct: 9 KKAYRKAAIKNHPDKGGDP-EKFKELAQAYDVLSDPEKREIYDQYGEDALKEGMGGGGGD 67
Query: 217 HNXXXXXXXXXXXXXXXXXXXXXXXXX-----VIHQLNVTLDELYKGNTRKLAIQKNVIC 381
H+ V+H L V+L+ELY G ++KL++ +NVIC
Sbjct: 68 HDPFDIFQSFFGGGGFGGGGSSRGRRQRRGEDVVHPLKVSLEELYNGTSKKLSLSRNVIC 127
Query: 382 DKCNGRGGKEGAVQKCNSCRGMGVEVHIRQLGPGMVQQMQTTCRTCKGEREVINERDRCK 561
KCNG+G K GA +C SC+G G++V IRQLGPGM+QQMQ C CKG E+IN++DRC
Sbjct: 128 SKCNGKGSKSGASMRCASCQGSGMKVSIRQLGPGMIQQMQHPCNDCKGTGEMINDKDRCP 187
Query: 562 KCEGQKVVREKKVLEVHIDKGMTDGQQIKFNGEGDQEPGLEPGDICIVLEEKPHNVFTRK 741
C+G+KVV+EKKVLEVH++KGM +GQ+I F GE D+ P GDI VL++K H F RK
Sbjct: 188 LCKGEKVVQEKKVLEVHVEKGMQNGQRITFPGEADEAPDTVTGDIVFVLQQKEHPKFQRK 247
Query: 742 KADLIYNMKLDLVDSLCGFKRTITTLDNRILVVETKPGEVIKNLEYRAIDNEGMPKYKSP 921
DL Y L L ++LCGF+ +T LD R L++++ PGEV+K +++AI++EGMP Y+ P
Sbjct: 248 GDDLFYKHTLSLTEALCGFQFVLTHLDGRQLLIKSNPGEVVKPDQFKAINDEGMPMYQRP 307
Query: 922 F 924
F
Sbjct: 308 F 308
>sp|P42824|DNJH2_ALLPO DnaJ protein homolog 2
Length = 418
Score = 293 bits (749), Expect = 6e-79
Identities = 145/301 (48%), Positives = 198/301 (65%), Gaps = 6/301 (1%)
Frame = +1
Query: 40 RKLICKLALKYHPDKNPDAGDKFKEISQAFEVLADPKKRQIYDDGGEQALKEG-GGDSGF 216
+K K A+K HPDK D +KFKEI QA+EVL DP+KR+IYD GE+ LKEG GG G
Sbjct: 30 KKAYRKAAIKNHPDKGGDP-EKFKEIGQAYEVLNDPEKREIYDQYGEEGLKEGMGGGGGV 88
Query: 217 HNXXXXXXXXXXXXXXXXXXXXXXXXX-----VIHQLNVTLDELYKGNTRKLAIQKNVIC 381
H+ V+H L V+L++LY G ++KL++ +NV+C
Sbjct: 89 HDPFDIFQSFFGGGGFGGGGSSRGRRQRRGEDVVHPLKVSLEDLYNGTSKKLSLSRNVLC 148
Query: 382 DKCNGRGGKEGAVQKCNSCRGMGVEVHIRQLGPGMVQQMQTTCRTCKGEREVINERDRCK 561
KC G+G K GA C SC+G G++V IRQLGPGM+QQMQ C CKG E+I+++DRC
Sbjct: 149 TKCKGKGSKSGASMNCASCQGSGMKVSIRQLGPGMIQQMQHPCNECKGTGEMISDKDRCP 208
Query: 562 KCEGQKVVREKKVLEVHIDKGMTDGQQIKFNGEGDQEPGLEPGDICIVLEEKPHNVFTRK 741
+C+G+KVV++KKVLEVH++KGM +GQ+I F GE D+ P GDI VL++K H F RK
Sbjct: 209 QCKGEKVVQQKKVLEVHVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRK 268
Query: 742 KADLIYNMKLDLVDSLCGFKRTITTLDNRILVVETKPGEVIKNLEYRAIDNEGMPKYKSP 921
DL Y L L ++LCGF+ +T LDNR L++++ PGEVIK +++ I++EGMP Y+ P
Sbjct: 269 GDDLFYEHSLSLTEALCGFQFVLTHLDNRQLLIKSNPGEVIKPDQFKGINDEGMPMYQRP 328
Query: 922 F 924
F
Sbjct: 329 F 329
>sp|Q04960|DNJH_CUCSA DnaJ protein homolog (DNAJ-1)
Length = 413
Score = 286 bits (731), Expect = 7e-77
Identities = 144/300 (48%), Positives = 194/300 (64%), Gaps = 5/300 (1%)
Frame = +1
Query: 40 RKLICKLALKYHPDKNPDAGDKFKEISQAFEVLADPKKRQIYDDGGEQALKEGGGDSGFH 219
+K K A+K HPDK D +KFKE++QA+EVL+DP+KR+IYD GE ALKEG G G H
Sbjct: 29 KKAYRKAAIKNHPDKGGDP-EKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGGGH 87
Query: 220 NXXXXXXXXXXXXXXXXXXXXXXXXX-----VIHQLNVTLDELYKGNTRKLAIQKNVICD 384
+ VIH L V+L++LY G ++KL++ +NVIC
Sbjct: 88 DPFDIFQSFFGGSPFGGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICS 147
Query: 385 KCNGRGGKEGAVQKCNSCRGMGVEVHIRQLGPGMVQQMQTTCRTCKGEREVINERDRCKK 564
KC G+G K GA KC C+G G++V IR LGP M+QQMQ C CKG E IN++DRC +
Sbjct: 148 KCKGKGSKSGASMKCPGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCSQ 207
Query: 565 CEGQKVVREKKVLEVHIDKGMTDGQQIKFNGEGDQEPGLEPGDICIVLEEKPHNVFTRKK 744
C+G+KVV+EKKVLEV ++KGM + Q+I F GE D+ P GDI VL++K H F RK
Sbjct: 208 CKGEKVVQEKKVLEVIVEKGMQNAQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKG 267
Query: 745 ADLIYNMKLDLVDSLCGFKRTITTLDNRILVVETKPGEVIKNLEYRAIDNEGMPKYKSPF 924
DL L LV+SLCGF+ +T LD R L++++ PGEV+K +++AI++EGMP Y+ PF
Sbjct: 268 DDLFVEHTLSLVESLCGFQFILTHLDGRQLLIKSLPGEVVKPDQFKAINDEGMPMYQRPF 327
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,726,658
Number of Sequences: 369166
Number of extensions: 1854820
Number of successful extensions: 6818
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5987
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9510757740
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)