Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_D14
(532 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P00889|CISY_PIG Citrate synthase, mitochondrial precursor 182 4e-46
sp|O75390|CISY_HUMAN Citrate synthase, mitochondrial precursor 179 3e-45
sp|P23007|CISY_CHICK Citrate synthase, mitochondrial 179 3e-45
sp|Q9CZU6|CISY_MOUSE Citrate synthase, mitochondrial precursor 179 4e-45
sp|Q9M1D3|CISY5_ARATH Citrate synthase 5, mitochondrial pre... 173 2e-43
sp|P00890|CISY1_YEAST Citrate synthase, mitochondrial precu... 170 2e-42
sp|P49298|CISY_CITMA Citrate synthase, mitochondrial precursor 168 9e-42
sp|Q10306|CISY_SCHPO Probable citrate synthase, mitochondri... 167 1e-41
sp|P79024|CISY_CANTR Citrate synthase, mitochondrial precursor 167 2e-41
sp|O80433|CISY_DAUCA Citrate synthase, mitochondrial precursor 167 2e-41
>sp|P00889|CISY_PIG Citrate synthase, mitochondrial precursor
Length = 464
Score = 182 bits (462), Expect = 4e-46
Identities = 86/113 (76%), Positives = 100/113 (88%)
Frame = +2
Query: 41 LLRKTDPRYMCQREFALKHLPDYPLFKVVSQLYQIVPDVLGKKSKIANPFPNVDAHSGVL 220
+LRKTDPRY CQREFALKHLP P+FK+V+QLY+IVP+VL ++ K NP+PNVDAHSGVL
Sbjct: 349 VLRKTDPRYTCQREFALKHLPHDPMFKLVAQLYKIVPNVLLEQGKAKNPWPNVDAHSGVL 408
Query: 221 LQYYGMTETNYYTVLFGISRALGILSSLIWDRALGLPIERPKSFSTDKLIELV 379
LQYYGMTE NYYTVLFG+SRALG+L+ LIW RALG P+ERPKS STD LI+LV
Sbjct: 409 LQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLERPKSMSTDGLIKLV 461
>sp|O75390|CISY_HUMAN Citrate synthase, mitochondrial precursor
Length = 466
Score = 179 bits (455), Expect = 3e-45
Identities = 86/118 (72%), Positives = 103/118 (87%), Gaps = 1/118 (0%)
Frame = +2
Query: 41 LLRKTDPRYMCQREFALKHLPDYPLFKVVSQLYQIVPDVLGKKSKIANPFPNVDAHSGVL 220
+LRKTDPRY CQREFALKHLP+ P+FK+V+QLY+IVP+VL ++ K NP+PNVDAHSGVL
Sbjct: 349 VLRKTDPRYTCQREFALKHLPNDPMFKLVAQLYKIVPNVLLEQGKAKNPWPNVDAHSGVL 408
Query: 221 LQYYGMTETNYYTVLFGISRALGILSSLIWDRALGLPIERPKSFSTDKLIELV-RKSG 391
LQYYGMTE NYYTVLFG+SRALG+L+ LIW RALG P+ERPKS ST+ L++ V KSG
Sbjct: 409 LQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLERPKSMSTEGLMKFVDSKSG 466
>sp|P23007|CISY_CHICK Citrate synthase, mitochondrial
Length = 433
Score = 179 bits (455), Expect = 3e-45
Identities = 85/112 (75%), Positives = 98/112 (87%)
Frame = +2
Query: 41 LLRKTDPRYMCQREFALKHLPDYPLFKVVSQLYQIVPDVLGKKSKIANPFPNVDAHSGVL 220
+LRKTDPRY CQREFALKHLP P+FK+V+QLY+IVP+VL ++ ANP+PNVDAHSGVL
Sbjct: 322 VLRKTDPRYTCQREFALKHLPGDPMFKLVAQLYKIVPNVLLEQGAAANPWPNVDAHSGVL 381
Query: 221 LQYYGMTETNYYTVLFGISRALGILSSLIWDRALGLPIERPKSFSTDKLIEL 376
LQYYGMTE NYYTVLFG+SRALG+L+ LIW RALG P+ERPKS STD LI L
Sbjct: 382 LQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLERPKSMSTDGLIAL 433
>sp|Q9CZU6|CISY_MOUSE Citrate synthase, mitochondrial precursor
Length = 464
Score = 179 bits (454), Expect = 4e-45
Identities = 83/113 (73%), Positives = 99/113 (87%)
Frame = +2
Query: 41 LLRKTDPRYMCQREFALKHLPDYPLFKVVSQLYQIVPDVLGKKSKIANPFPNVDAHSGVL 220
+LRKTDPRY CQREFALKHLP P+FK+V+QLY+IVP++L ++ K NP+PNVDAHSGVL
Sbjct: 349 VLRKTDPRYSCQREFALKHLPKDPMFKLVAQLYKIVPNILLEQGKAKNPWPNVDAHSGVL 408
Query: 221 LQYYGMTETNYYTVLFGISRALGILSSLIWDRALGLPIERPKSFSTDKLIELV 379
LQYYGMTE NYYTVLFG+SRALG+L+ LIW RALG P+ERPKS STD L++ V
Sbjct: 409 LQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLERPKSMSTDGLMKFV 461
>sp|Q9M1D3|CISY5_ARATH Citrate synthase 5, mitochondrial precursor
Length = 433
Score = 173 bits (439), Expect = 2e-43
Identities = 80/114 (70%), Positives = 96/114 (84%)
Frame = +2
Query: 41 LLRKTDPRYMCQREFALKHLPDYPLFKVVSQLYQIVPDVLGKKSKIANPFPNVDAHSGVL 220
+LRKTDPRY+CQREFALKHLPD PLF++VS+LY++VP +L + K+ NP+PNVDAHSGVL
Sbjct: 317 VLRKTDPRYICQREFALKHLPDDPLFQLVSKLYEVVPPILTELGKVKNPWPNVDAHSGVL 376
Query: 221 LQYYGMTETNYYTVLFGISRALGILSSLIWDRALGLPIERPKSFSTDKLIELVR 382
L YYG+TE YYTVLFG+SR+LGI S LIWDRALGLP+ERPKS + D L R
Sbjct: 377 LNYYGLTEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVNMDWLDNFTR 430
>sp|P00890|CISY1_YEAST Citrate synthase, mitochondrial precursor
Length = 479
Score = 170 bits (430), Expect = 2e-42
Identities = 79/115 (68%), Positives = 96/115 (83%)
Frame = +2
Query: 41 LLRKTDPRYMCQREFALKHLPDYPLFKVVSQLYQIVPDVLGKKSKIANPFPNVDAHSGVL 220
+LRKTDPRY QREFALKH PDY LFK+VS +Y++ P VL K K NP+PNVD+HSGVL
Sbjct: 360 VLRKTDPRYTAQREFALKHFPDYELFKLVSTIYEVAPGVLTKHGKTKNPWPNVDSHSGVL 419
Query: 221 LQYYGMTETNYYTVLFGISRALGILSSLIWDRALGLPIERPKSFSTDKLIELVRK 385
LQYYG+TE ++YTVLFG++RA+G+L LI DRA+G PIERPKSFST+K ELV+K
Sbjct: 420 LQYYGLTEASFYTVLFGVARAIGVLPQLIIDRAVGAPIERPKSFSTEKYKELVKK 474
>sp|P49298|CISY_CITMA Citrate synthase, mitochondrial precursor
Length = 471
Score = 168 bits (425), Expect = 9e-42
Identities = 77/116 (66%), Positives = 97/116 (83%)
Frame = +2
Query: 41 LLRKTDPRYMCQREFALKHLPDYPLFKVVSQLYQIVPDVLGKKSKIANPFPNVDAHSGVL 220
+LRKTDPRY CQREFALKHLPD PLF++VS+LY++VP +L K K+ NP+PNVDAHSGVL
Sbjct: 355 VLRKTDPRYTCQREFALKHLPDDPLFQLVSKLYEVVPPILTKLGKVKNPWPNVDAHSGVL 414
Query: 221 LQYYGMTETNYYTVLFGISRALGILSSLIWDRALGLPIERPKSFSTDKLIELVRKS 388
L ++G+ E YYTVLFG+SR+LGI S LIWDRALGLP+ERPKS + D + + +K+
Sbjct: 415 LNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDWIEKNCKKA 470
>sp|Q10306|CISY_SCHPO Probable citrate synthase, mitochondrial precursor
Length = 473
Score = 167 bits (424), Expect = 1e-41
Identities = 78/113 (69%), Positives = 96/113 (84%)
Frame = +2
Query: 41 LLRKTDPRYMCQREFALKHLPDYPLFKVVSQLYQIVPDVLGKKSKIANPFPNVDAHSGVL 220
+LRKTDPRY QREFAL+HLP P+F++VS+LY+IVP VL + K NP+PNVD+HSGVL
Sbjct: 358 VLRKTDPRYTAQREFALEHLPKDPMFQLVSRLYEIVPGVLTEHGKTKNPYPNVDSHSGVL 417
Query: 221 LQYYGMTETNYYTVLFGISRALGILSSLIWDRALGLPIERPKSFSTDKLIELV 379
LQYYG+ E ++YTVLFG+SR LG+ S LIWDRALGLPIERPKSFST+ L ++V
Sbjct: 418 LQYYGLKEQSFYTVLFGVSRTLGVASQLIWDRALGLPIERPKSFSTEALKKMV 470
>sp|P79024|CISY_CANTR Citrate synthase, mitochondrial precursor
Length = 467
Score = 167 bits (422), Expect = 2e-41
Identities = 77/117 (65%), Positives = 94/117 (80%)
Frame = +2
Query: 41 LLRKTDPRYMCQREFALKHLPDYPLFKVVSQLYQIVPDVLGKKSKIANPFPNVDAHSGVL 220
+LRKTDPRY QREFALKH+PDY LFK+VS +Y++ P V + NP+PNV +HSGVL
Sbjct: 349 VLRKTDPRYTAQREFALKHMPDYELFKLVSNIYEVAPGVFDQHGMTKNPWPNVGSHSGVL 408
Query: 221 LQYYGMTETNYYTVLFGISRALGILSSLIWDRALGLPIERPKSFSTDKLIELVRKSG 391
LQYYG+TE ++YTVLFG+SRA G+L LI DR LG+PIERPKSFST+K IELV+ G
Sbjct: 409 LQYYGLTEESFYTVLFGVSRAFGVLPQLILDRGLGMPIERPKSFSTEKYIELVKSIG 465
>sp|O80433|CISY_DAUCA Citrate synthase, mitochondrial precursor
Length = 472
Score = 167 bits (422), Expect = 2e-41
Identities = 76/116 (65%), Positives = 96/116 (82%)
Frame = +2
Query: 41 LLRKTDPRYMCQREFALKHLPDYPLFKVVSQLYQIVPDVLGKKSKIANPFPNVDAHSGVL 220
+LR TDPRY+CQREFALKHLPD PLF++VS L+++VP +L + K+ NP+PNVDAHSGVL
Sbjct: 356 VLRNTDPRYICQREFALKHLPDDPLFQLVSNLFEVVPPILTELGKVKNPWPNVDAHSGVL 415
Query: 221 LQYYGMTETNYYTVLFGISRALGILSSLIWDRALGLPIERPKSFSTDKLIELVRKS 388
L +YG+TE YYTVLFG+SRA+GI S L+WDRALGLP+ERPKS + + L +KS
Sbjct: 416 LNHYGLTEARYYTVLFGVSRAIGICSQLVWDRALGLPLERPKSVTMEWLENHCKKS 471
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,643,918
Number of Sequences: 369166
Number of extensions: 1093069
Number of successful extensions: 2813
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2808
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3600891075
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)