Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_C21
(335 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O17606|YK4P_CAEEL Hypothetical UPF0160 protein C27H6.8 i... 87 2e-17
sp|Q9P7T6|YIW4_SCHPO Hypothetical UPF0160 protein C694.04c ... 81 7e-16
sp|Q9HB07|MYG1_HUMAN MYG1 protein 79 3e-15
sp|Q9JK81|MYG1_MOUSE MYG1 protein (Gamm1 protein) 77 1e-14
sp|P40093|YEY6_YEAST Hypothetical UPF0160 protein YER156c 70 2e-12
sp|O84391|Y386_CHLTR Hypothetical UPF0160 protein CT386 40 0.002
sp|Q9PK08|Y665_CHLMU Hypothetical UPF0160 protein TC0665 39 0.004
sp|Q9Z862|Y489_CHLPN UPF0160 protein CPn0489/CP0265/CPj0489... 38 0.006
sp|P36745|VL2_HPV07 Minor capsid protein L2 30 1.7
sp|O28664|SYP_ARCFU Prolyl-tRNA synthetase (Proline--tRNA l... 30 1.7
>sp|O17606|YK4P_CAEEL Hypothetical UPF0160 protein C27H6.8 in chromosome V
Length = 340
Score = 86.7 bits (213), Expect = 2e-17
Identities = 43/79 (54%), Positives = 54/79 (68%), Gaps = 2/79 (2%)
Frame = +3
Query: 6 FVLVSDRD--SWRVQCIPVSEKQGFKNRTGLLEEWRGIREDELCNKSRIPGSVFVHASGF 179
++L SD SWRVQ IPV + F+NR L WRG+R+D+L +S IPG VFVH SGF
Sbjct: 248 YILFSDSTNASWRVQAIPVDKMSSFENRMPLPAAWRGLRDDDLSKESGIPGGVFVHISGF 307
Query: 180 IGGNKSYDGALEMAVKTLE 236
IGGN + +GA+ MA K LE
Sbjct: 308 IGGNLTREGAIAMARKALE 326
>sp|Q9P7T6|YIW4_SCHPO Hypothetical UPF0160 protein C694.04c in chromosome I
Length = 324
Score = 81.3 bits (199), Expect = 7e-16
Identities = 38/78 (48%), Positives = 55/78 (70%)
Frame = +3
Query: 3 RFVLVSDRDSWRVQCIPVSEKQGFKNRTGLLEEWRGIREDELCNKSRIPGSVFVHASGFI 182
++ + SD +WRVQ + + + F R L E WRGIR+++L + IPG +FVHASGFI
Sbjct: 244 KYAIYSDGKAWRVQAVSI-DPTSFTCRLPLPEPWRGIRDEKLSELTGIPGCIFVHASGFI 302
Query: 183 GGNKSYDGALEMAVKTLE 236
GGN++++GALEMA K L+
Sbjct: 303 GGNQTFEGALEMARKALD 320
>sp|Q9HB07|MYG1_HUMAN MYG1 protein
Length = 376
Score = 79.3 bits (194), Expect = 3e-15
Identities = 41/87 (47%), Positives = 56/87 (64%), Gaps = 1/87 (1%)
Frame = +3
Query: 6 FVLVSDR-DSWRVQCIPVSEKQGFKNRTGLLEEWRGIREDELCNKSRIPGSVFVHASGFI 182
FV+ +D+ WR+QC+P E F++R L E WRG+R++ L S IPG +FVHASGFI
Sbjct: 291 FVIYTDQAGQWRIQCVP-KEPHSFQSRLPLPEPWRGLRDEALDQVSGIPGCIFVHASGFI 349
Query: 183 GGNKSYDGALEMAVKTLEHSGLLE*VS 263
GG+ + +GAL MA TL L +S
Sbjct: 350 GGHPTREGALSMARATLAQRSYLPQIS 376
>sp|Q9JK81|MYG1_MOUSE MYG1 protein (Gamm1 protein)
Length = 380
Score = 77.4 bits (189), Expect = 1e-14
Identities = 40/77 (51%), Positives = 52/77 (67%), Gaps = 1/77 (1%)
Frame = +3
Query: 6 FVLVSDR-DSWRVQCIPVSEKQGFKNRTGLLEEWRGIREDELCNKSRIPGSVFVHASGFI 182
FV+ +D+ WRVQC+P E F++R L E WRG+R+ L S IPG +FVHASGFI
Sbjct: 290 FVIYTDQAGQWRVQCVP-KEPHSFQSRLPLPEPWRGLRDKALDQVSGIPGCIFVHASGFI 348
Query: 183 GGNKSYDGALEMAVKTL 233
GG+ + +GAL MA TL
Sbjct: 349 GGHHTREGALNMARATL 365
>sp|P40093|YEY6_YEAST Hypothetical UPF0160 protein YER156c
Length = 338
Score = 69.7 bits (169), Expect = 2e-12
Identities = 35/77 (45%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
Frame = +3
Query: 6 FVLVSDRD-SWRVQCIPVSEKQGFKNRTGLLEEWRGIREDELCNKSRIPGSVFVHASGFI 182
FVL +D +WRV +P++ F+ R GL E RG+R++EL KS +PG +F+HA+GFI
Sbjct: 262 FVLFTDSSGAWRVSTVPINSTS-FQFRRGLPEPLRGLRDEELSTKSGVPGCIFIHAAGFI 320
Query: 183 GGNKSYDGALEMAVKTL 233
GG KS + E+A +L
Sbjct: 321 GGAKSKEAVYELAKMSL 337
>sp|O84391|Y386_CHLTR Hypothetical UPF0160 protein CT386
Length = 289
Score = 40.0 bits (92), Expect = 0.002
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Frame = +3
Query: 6 FVLVSDRDSWRVQCIPVSEKQGFKNRTGLLEEWRGIREDELCNKSRIPGSVFVHASGFIG 185
FV D W ++ IP + + + R EEW G+ D+L + IPG++F H F+
Sbjct: 208 FVSFPCSDQWILRGIPPTLDRRMEVRIPFPEEWAGLLGDQLVQATGIPGAIFCHKGLFLS 267
Query: 186 ---GNKSYDGALEMAVK 227
+S + AL + +K
Sbjct: 268 VWDSQESCEEALNLVLK 284
>sp|Q9PK08|Y665_CHLMU Hypothetical UPF0160 protein TC0665
Length = 289
Score = 38.9 bits (89), Expect = 0.004
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Frame = +3
Query: 6 FVLVSDRDSWRVQCIPVSEKQGFKNRTGLLEEWRGIREDELCNKSRIPGSVFVHASGFIG 185
FV D W ++ IP + + + R E+W G+ D+L + IPG++F H F+
Sbjct: 208 FVSFPCSDQWILRGIPPTLDRRMEVRIPFPEDWAGLLGDQLVKATGIPGAIFCHKGLFLS 267
Query: 186 ---GNKSYDGALEMAVK 227
+S + AL + +K
Sbjct: 268 VWDSRESCEEALNLVLK 284
>sp|Q9Z862|Y489_CHLPN UPF0160 protein CPn0489/CP0265/CPj0489/CpB0509
Length = 290
Score = 38.1 bits (87), Expect = 0.006
Identities = 23/82 (28%), Positives = 36/82 (43%)
Frame = +3
Query: 6 FVLVSDRDSWRVQCIPVSEKQGFKNRTGLLEEWRGIREDELCNKSRIPGSVFVHASGFIG 185
FV D W ++ IP + + + R E W G+ EL S IPG+VF H F+
Sbjct: 209 FVCFPSCDQWILRGIPPNLDRRMEVRVPFPENWAGLLGKELSKVSGIPGAVFCHKGLFLS 268
Query: 186 GNKSYDGALEMAVKTLEHSGLL 251
+ + TL+ G++
Sbjct: 269 VWTNRESCQRALRLTLQDRGII 290
>sp|P36745|VL2_HPV07 Minor capsid protein L2
Length = 456
Score = 30.0 bits (66), Expect = 1.7
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Frame = -2
Query: 235 SKVLTAISKAPS*LLLPPINPEACTNTEPGIRDLLHNSSSLIPLHSSNKPVLFLNPCFSL 56
S+ + S AP + PP+ + T+P I L+ SS I + PV+ FS+
Sbjct: 78 SRAIPPKSLAPDVIARPPVVVDTVAPTDPSIVSLIEESS--IIQSGAPSPVIPTEGGFSI 135
Query: 55 T--GMHCTRQLSLSETNT 8
T G L +S TNT
Sbjct: 136 TSSGTDVPAILDISSTNT 153
>sp|O28664|SYP_ARCFU Prolyl-tRNA synthetase (Proline--tRNA ligase) (ProRS)
Length = 575
Score = 30.0 bits (66), Expect = 1.7
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +3
Query: 54 VSEKQGFKNRTGLLEEWRGIREDELCNKSRIPGSVFVHASGFIG 185
++EK F TG +EEW G+ LC+ SV H +G
Sbjct: 499 MAEKVKFVENTGEIEEWGGVVAVYLCSDEDCGHSVEEHGKSLLG 542
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,735,834
Number of Sequences: 369166
Number of extensions: 797866
Number of successful extensions: 2041
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2039
length of database: 68,354,980
effective HSP length: 79
effective length of database: 53,760,915
effective search space used: 1720349280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)