Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_C18
(616 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9ES88|S13A2_MOUSE Solute carrier family 13 member 2 (Re... 32 1.7
sp|Q28615|S13A2_RABIT Solute carrier family 13 member 2 (Re... 31 2.2
sp|Q13183|S13A2_HUMAN Solute carrier family 13 member 2 (Re... 31 2.2
>sp|Q9ES88|S13A2_MOUSE Solute carrier family 13 member 2 (Renal sodium/dicarboxylate
cotransporter) (Na(+)/dicarboxylate cotransporter 1)
(NaDC-1)
Length = 586
Score = 31.6 bits (70), Expect = 1.7
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +1
Query: 478 SLALSLCTGYAASCGAVATLVASGCNLVAYG 570
S LSLC Y+AS G +ATL + NLV G
Sbjct: 213 SQGLSLCICYSASIGGIATLTGTTPNLVLQG 243
>sp|Q28615|S13A2_RABIT Solute carrier family 13 member 2 (Renal sodium/dicarboxylate
cotransporter) (Na(+)/dicarboxylate cotransporter 1)
(NaDC-1)
Length = 593
Score = 31.2 bits (69), Expect = 2.2
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +1
Query: 478 SLALSLCTGYAASCGAVATLVASGCNLVAYG 570
S +SLC Y+AS G +ATL + NLV G
Sbjct: 219 SQGMSLCVCYSASIGGIATLTGTTPNLVLQG 249
>sp|Q13183|S13A2_HUMAN Solute carrier family 13 member 2 (Renal sodium/dicarboxylate
cotransporter) (Na(+)/dicarboxylate cotransporter 1)
(NaDC-1)
Length = 592
Score = 31.2 bits (69), Expect = 2.2
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +1
Query: 487 LSLCTGYAASCGAVATLVASGCNLVAYG 570
+SLC Y+AS G +ATL + NLV G
Sbjct: 221 MSLCVCYSASIGGIATLTGTAPNLVLQG 248
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,559,220
Number of Sequences: 369166
Number of extensions: 1225303
Number of successful extensions: 2681
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2681
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4846822695
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)