Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_C16
(698 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P63081|VATL_RAT Vacuolar ATP synthase 16 kDa proteolipid... 195 1e-49
sp|Q03105|VATL_TORMA Vacuolar ATP synthase 16 kDa proteolip... 192 5e-49
sp|P55277|VATL_HELVI Vacuolar ATP synthase 16 kDa proteolip... 191 2e-48
sp|P27449|VATL_HUMAN Vacuolar ATP synthase 16 kDa proteolip... 191 2e-48
sp|P23956|VATL_BOVIN Vacuolar ATP synthase 16 kDa proteolip... 191 2e-48
sp|O18882|VATL_SHEEP Vacuolar ATP synthase 16 kDa proteolip... 191 2e-48
sp|P31403|VATL_MANSE Vacuolar ATP synthase 16 kDa proteolip... 190 4e-48
sp|O16110|VATL_AEDAE Vacuolar ATP synthase 16 kDa proteolip... 188 1e-47
sp|P23380|VATL_DROME Vacuolar ATP synthase 16 kDa proteolip... 186 7e-47
sp|Q26250|VATL_NEPNO Vacuolar ATP synthase 16 kDa proteolip... 184 3e-46
>sp|P63081|VATL_RAT Vacuolar ATP synthase 16 kDa proteolipid subunit
sp|P63082|VATL_MOUSE Vacuolar ATP synthase 16 kDa proteolipid subunit (PL16)
Length = 155
Score = 195 bits (495), Expect = 1e-49
Identities = 107/143 (74%), Positives = 114/143 (79%)
Frame = +2
Query: 2 FFGVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVV 181
FFGVMG +SAMVF A+GAAYGTAKSGTGIA+M+VMRPELIMKSIIPVVMAGIIAIYGLVV
Sbjct: 13 FFGVMGASSAMVFSAMGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVV 72
Query: 182 AVLIAQQIGTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVGMI 361
AVLIA + T+ +S IGIVGDAGVRGTAQQPRLFVGMI
Sbjct: 73 AVLIANSLTDGITLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMI 132
Query: 362 LILIFAEVLGLYGLIVALILSTK 430
LILIFAEVLGLYGLIVALILSTK
Sbjct: 133 LILIFAEVLGLYGLIVALILSTK 155
>sp|Q03105|VATL_TORMA Vacuolar ATP synthase 16 kDa proteolipid subunit (15 kDa
mediatophore protein)
Length = 154
Score = 192 bits (489), Expect = 5e-49
Identities = 106/143 (74%), Positives = 115/143 (80%)
Frame = +2
Query: 2 FFGVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVV 181
FFGV+G ++AMVF ALGAAYGTAKSGTGIA+M+VMRPELIMKSIIPVVMAGIIAIYGLVV
Sbjct: 12 FFGVIGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVV 71
Query: 182 AVLIAQQIGTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVGMI 361
AVLIA + + ++ KS IGIVGDAGVRGTAQQPRLFVGMI
Sbjct: 72 AVLIANSLTEDISLFKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMI 131
Query: 362 LILIFAEVLGLYGLIVALILSTK 430
LILIFAEVLGLYGLIVALILSTK
Sbjct: 132 LILIFAEVLGLYGLIVALILSTK 154
>sp|P55277|VATL_HELVI Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 156
Score = 191 bits (485), Expect = 2e-48
Identities = 106/146 (72%), Positives = 113/146 (77%), Gaps = 3/146 (2%)
Frame = +2
Query: 2 FFGVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVV 181
FFGVMG SA++F ALGAAYGTAKSGTGIA+M+VMRPELIMKSIIPVVMAGIIAIYGLVV
Sbjct: 10 FFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVV 69
Query: 182 AVLIAQQI---GTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFV 352
AVLIA + NYT+ K H IGIVGDAGVRGTAQQPRLFV
Sbjct: 70 AVLIAGSLDAPSNNYTLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFV 129
Query: 353 GMILILIFAEVLGLYGLIVALILSTK 430
GMILILIFAEVLGLYGLIVA+ L TK
Sbjct: 130 GMILILIFAEVLGLYGLIVAIYLYTK 155
>sp|P27449|VATL_HUMAN Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 155
Score = 191 bits (484), Expect = 2e-48
Identities = 105/143 (73%), Positives = 113/143 (79%)
Frame = +2
Query: 2 FFGVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVV 181
FF VMG ++AMVF ALGAAYGTAKSGTGIA+M+VMRPE IMKSIIPVVMAGIIAIYGLVV
Sbjct: 13 FFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEQIMKSIIPVVMAGIIAIYGLVV 72
Query: 182 AVLIAQQIGTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVGMI 361
AVLIA + + ++ KS IGIVGDAGVRGTAQQPRLFVGMI
Sbjct: 73 AVLIANSLNDDISLYKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMI 132
Query: 362 LILIFAEVLGLYGLIVALILSTK 430
LILIFAEVLGLYGLIVALILSTK
Sbjct: 133 LILIFAEVLGLYGLIVALILSTK 155
>sp|P23956|VATL_BOVIN Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 155
Score = 191 bits (484), Expect = 2e-48
Identities = 104/143 (72%), Positives = 113/143 (79%)
Frame = +2
Query: 2 FFGVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVV 181
FF VMG ++AMVF ALGAAYGTAKSGTGIA+M+VMRPE+IMKSIIPVVMAGIIAIYGLVV
Sbjct: 13 FFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEMIMKSIIPVVMAGIIAIYGLVV 72
Query: 182 AVLIAQQIGTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVGMI 361
AVLIA + ++ +S IGIVGDAGVRGTAQQPRLFVGMI
Sbjct: 73 AVLIANSLNDGISLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMI 132
Query: 362 LILIFAEVLGLYGLIVALILSTK 430
LILIFAEVLGLYGLIVALILSTK
Sbjct: 133 LILIFAEVLGLYGLIVALILSTK 155
>sp|O18882|VATL_SHEEP Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 155
Score = 191 bits (484), Expect = 2e-48
Identities = 104/143 (72%), Positives = 113/143 (79%)
Frame = +2
Query: 2 FFGVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVV 181
FF VMG ++AMVF ALGAAYGTAKSGTGIA+M+VMRPE+IMKSIIPVVMAGIIAIYGLVV
Sbjct: 13 FFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEMIMKSIIPVVMAGIIAIYGLVV 72
Query: 182 AVLIAQQIGTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVGMI 361
AVLIA + ++ +S IGIVGDAGVRGTAQQPRLFVGMI
Sbjct: 73 AVLIANSLNDGISLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMI 132
Query: 362 LILIFAEVLGLYGLIVALILSTK 430
LILIFAEVLGLYGLIVALILSTK
Sbjct: 133 LILIFAEVLGLYGLIVALILSTK 155
>sp|P31403|VATL_MANSE Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 156
Score = 190 bits (482), Expect = 4e-48
Identities = 105/146 (71%), Positives = 113/146 (77%), Gaps = 3/146 (2%)
Frame = +2
Query: 2 FFGVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVV 181
FFGVMG SA++F ALGAAYGTAKSGTGIA+M+VMRPELIMKSIIPVVMAGIIAIYGLVV
Sbjct: 10 FFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVV 69
Query: 182 AVLIAQQI---GTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFV 352
AVLIA + NYT+ + H IGIVGDAGVRGTAQQPRLFV
Sbjct: 70 AVLIAGSLDSPSNNYTLYRGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFV 129
Query: 353 GMILILIFAEVLGLYGLIVALILSTK 430
GMILILIFAEVLGLYGLIVA+ L TK
Sbjct: 130 GMILILIFAEVLGLYGLIVAIYLYTK 155
>sp|O16110|VATL_AEDAE Vacuolar ATP synthase 16 kDa proteolipid subunit (V-ATPase
C-subunit)
Length = 157
Score = 188 bits (477), Expect = 1e-47
Identities = 104/145 (71%), Positives = 113/145 (77%), Gaps = 2/145 (1%)
Frame = +2
Query: 2 FFGVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVV 181
FFGVMG +A++F ALGAAYGTAKSGTGIA+M+VMRPELIMKSIIPVVMAGIIAIYGLVV
Sbjct: 13 FFGVMGAAAAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVV 72
Query: 182 AVLIAQQIG--TNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVG 355
AVLIA + T Y++ K H IGIVGDAGVRGTAQQPRLFVG
Sbjct: 73 AVLIAGSLDTPTKYSLYKGFIHLGAGLAVGISGLAAGFAIGIVGDAGVRGTAQQPRLFVG 132
Query: 356 MILILIFAEVLGLYGLIVALILSTK 430
MILILIFAEVLGLYGLIVA+ L TK
Sbjct: 133 MILILIFAEVLGLYGLIVAIYLYTK 157
>sp|P23380|VATL_DROME Vacuolar ATP synthase 16 kDa proteolipid subunit (Ductin) (VHA16K)
Length = 159
Score = 186 bits (471), Expect = 7e-47
Identities = 103/145 (71%), Positives = 113/145 (77%), Gaps = 2/145 (1%)
Frame = +2
Query: 2 FFGVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVV 181
FFGVMG SA++F ALGAAYGTAKSGTGIA+M+VMRPELIMKSIIPVVMAGIIAIYGLVV
Sbjct: 15 FFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVV 74
Query: 182 AVLIAQQI--GTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVG 355
AVLIA + + Y++ + H IGIVGDAGVRGTAQQPRLFVG
Sbjct: 75 AVLIAGALEEPSKYSLYRGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVG 134
Query: 356 MILILIFAEVLGLYGLIVALILSTK 430
MILILIFAEVLGLYGLIVA+ L TK
Sbjct: 135 MILILIFAEVLGLYGLIVAIYLYTK 159
>sp|Q26250|VATL_NEPNO Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 159
Score = 184 bits (466), Expect = 3e-46
Identities = 102/145 (70%), Positives = 111/145 (76%), Gaps = 2/145 (1%)
Frame = +2
Query: 2 FFGVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVV 181
FFGVMG SAMVF ALGAAYGTAKSG GI++M+VMRPELIMK IIPVVMAGIIAIYGLVV
Sbjct: 12 FFGVMGAASAMVFSALGAAYGTAKSGVGISAMSVMRPELIMKCIIPVVMAGIIAIYGLVV 71
Query: 182 AVLIAQQI--GTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVG 355
AVLIA ++ YT+ + H IGIVGDAGVRGTAQQPRL+VG
Sbjct: 72 AVLIAGKLDEAPTYTLYQGFVHMGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLYVG 131
Query: 356 MILILIFAEVLGLYGLIVALILSTK 430
MILILIFAEVLGLYGLIVA+ L TK
Sbjct: 132 MILILIFAEVLGLYGLIVAIFLYTK 156
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,195,640
Number of Sequences: 369166
Number of extensions: 1118013
Number of successful extensions: 3588
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3508
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6073541875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)