Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_C11
(378 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P48158|RL23_CAEEL 60S ribosomal protein L23 187 5e-48
sp|P62830|RL23_MOUSE 60S ribosomal protein L23 >gi|51338617... 178 3e-45
sp|Q6PC14|RL23_BRARE 60S ribosomal protein L23 177 7e-45
sp|Q5REU2|RL23_PONPY 60S ribosomal protein L23 177 9e-45
sp|O42867|RL23_SCHPO 60S ribosomal protein L23 174 4e-44
sp|Q93140|RL23_BRUMA 60S ribosomal protein L23 174 4e-44
sp|Q9GNE2|RL23_AEDAE 60S ribosomal protein L23 (L17A) 174 4e-44
sp|P48159|RL23_DROME 60S ribosomal protein L23 (L17A) 174 6e-44
sp|Q9XSU3|RL23_CANFA 60S ribosomal protein L23 173 1e-43
sp|Q07760|RL23_TOBAC 60S ribosomal protein L23 168 3e-42
>sp|P48158|RL23_CAEEL 60S ribosomal protein L23
Length = 140
Score = 187 bits (476), Expect = 5e-48
Identities = 87/107 (81%), Positives = 100/107 (93%)
Frame = +3
Query: 3 VINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKKVLQGVVIRQ 182
V+NCADN+GAKN+++ISV+G + RLNRLP+A VGDM VCSVKKGKPELRKKVLQGVVIRQ
Sbjct: 25 VMNCADNTGAKNLFVISVYGIRGRLNRLPSAGVGDMFVCSVKKGKPELRKKVLQGVVIRQ 84
Query: 183 RKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 323
RK ++RKDGT I FEDNAGV+VNNKGEMKGSAITGPVAKECAD+WP+
Sbjct: 85 RKQFRRKDGTFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
>sp|P62830|RL23_MOUSE 60S ribosomal protein L23
sp|P62832|RL23_RAT 60S ribosomal protein L23
sp|Q90YU5|RL23_ICTPU 60S ribosomal protein L23
sp|P62829|RL23_HUMAN 60S ribosomal protein L23 (Ribosomal protein L17)
sp|P62831|RL23_PIG 60S ribosomal protein L23 (Ribosomal protein L17)
Length = 140
Score = 178 bits (452), Expect = 3e-45
Identities = 86/107 (80%), Positives = 95/107 (88%)
Frame = +3
Query: 3 VINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKKVLQGVVIRQ 182
VINCADN+GAKN+YIISV G K RLNRLPAA VGDMV+ +VKKGKPELRKKV VVIRQ
Sbjct: 25 VINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQ 84
Query: 183 RKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 323
RK Y+RKDG + FEDNAGV+VNNKGEMKGSAITGPVAKECAD+WP+
Sbjct: 85 RKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
>sp|Q6PC14|RL23_BRARE 60S ribosomal protein L23
Length = 140
Score = 177 bits (449), Expect = 7e-45
Identities = 85/107 (79%), Positives = 95/107 (88%)
Frame = +3
Query: 3 VINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKKVLQGVVIRQ 182
VINCADN+GAKN+YIISV G K RLNRLP+A VGDMV+ +VKKGKPELRKKV VVIRQ
Sbjct: 25 VINCADNTGAKNLYIISVKGIKGRLNRLPSAGVGDMVMATVKKGKPELRKKVHPAVVIRQ 84
Query: 183 RKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 323
RK Y+RKDG + FEDNAGV+VNNKGEMKGSAITGPVAKECAD+WP+
Sbjct: 85 RKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
>sp|Q5REU2|RL23_PONPY 60S ribosomal protein L23
Length = 140
Score = 177 bits (448), Expect = 9e-45
Identities = 85/107 (79%), Positives = 95/107 (88%)
Frame = +3
Query: 3 VINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKKVLQGVVIRQ 182
VINCADN+GAKN+YIISV G K +LNRLPAA VGDMV+ +VKKGKPELRKKV VVIRQ
Sbjct: 25 VINCADNTGAKNLYIISVKGIKGQLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQ 84
Query: 183 RKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 323
RK Y+RKDG + FEDNAGV+VNNKGEMKGSAITGPVAKECAD+WP+
Sbjct: 85 RKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
>sp|O42867|RL23_SCHPO 60S ribosomal protein L23
Length = 139
Score = 174 bits (442), Expect = 4e-44
Identities = 78/107 (72%), Positives = 97/107 (90%)
Frame = +3
Query: 3 VINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKKVLQGVVIRQ 182
++NCADNSGAKN+YI+SVFGT +RLNRLPAA+ GDMV+ +VKKGKP+LRKK++ +V+RQ
Sbjct: 24 IMNCADNSGAKNLYIVSVFGTGARLNRLPAASCGDMVLATVKKGKPDLRKKIMPAIVVRQ 83
Query: 183 RKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 323
RK ++RKDG + FEDNAGV+VN KGEMKGSAITGPVAKECAD+WP+
Sbjct: 84 RKAWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADLWPR 130
>sp|Q93140|RL23_BRUMA 60S ribosomal protein L23
Length = 140
Score = 174 bits (442), Expect = 4e-44
Identities = 82/107 (76%), Positives = 95/107 (88%)
Frame = +3
Query: 3 VINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKKVLQGVVIRQ 182
V+NCADN+GAKN+++I+V G K RLNRLP+A VGDM V SVKKGKPELRKKVLQ VV+RQ
Sbjct: 25 VMNCADNTGAKNLFVIAVSGIKGRLNRLPSAGVGDMFVASVKKGKPELRKKVLQAVVVRQ 84
Query: 183 RKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 323
RK Y+R DG+ I FEDNAGV+VNNKGEMKGSAITGPV KECAD+WP+
Sbjct: 85 RKQYRRIDGSSIYFEDNAGVIVNNKGEMKGSAITGPVTKECADLWPR 131
>sp|Q9GNE2|RL23_AEDAE 60S ribosomal protein L23 (L17A)
Length = 140
Score = 174 bits (442), Expect = 4e-44
Identities = 81/107 (75%), Positives = 95/107 (88%)
Frame = +3
Query: 3 VINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKKVLQGVVIRQ 182
VINCADN+GAKN+Y+I+V G + RLNRLPAA VGDM V +VKKGKPELRKKV+ VVIRQ
Sbjct: 25 VINCADNTGAKNLYVIAVHGIRGRLNRLPAAGVGDMFVATVKKGKPELRKKVMPAVVIRQ 84
Query: 183 RKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 323
RK ++R+DG + FEDNAGV+VNNKGEMKGSAITGPVAKECAD+WP+
Sbjct: 85 RKPFRRRDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
>sp|P48159|RL23_DROME 60S ribosomal protein L23 (L17A)
Length = 140
Score = 174 bits (441), Expect = 6e-44
Identities = 81/107 (75%), Positives = 95/107 (88%)
Frame = +3
Query: 3 VINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKKVLQGVVIRQ 182
V+NCADN+GAKN+Y+I+V G + RLNRLPAA VGDM V +VKKGKPELRKKV+ VVIRQ
Sbjct: 25 VMNCADNTGAKNLYVIAVHGIRGRLNRLPAAGVGDMFVATVKKGKPELRKKVMPAVVIRQ 84
Query: 183 RKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 323
RK ++R+DG I FEDNAGV+VNNKGEMKGSAITGPVAKECAD+WP+
Sbjct: 85 RKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
>sp|Q9XSU3|RL23_CANFA 60S ribosomal protein L23
Length = 140
Score = 173 bits (439), Expect = 1e-43
Identities = 84/106 (79%), Positives = 92/106 (86%)
Frame = +3
Query: 3 VINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKKVLQGVVIRQ 182
VINCADN+GAKN+YIISV G K RLNRLPAA VGDMV+ +VKKGKP LRKKV VVIRQ
Sbjct: 25 VINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPXLRKKVHPAVVIRQ 84
Query: 183 RKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWP 320
RK Y+RKDG + FEDNAGV+VNNKGEMKGSAITGPV KECAD+WP
Sbjct: 85 RKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVXKECADLWP 130
>sp|Q07760|RL23_TOBAC 60S ribosomal protein L23
Length = 140
Score = 168 bits (426), Expect = 3e-42
Identities = 78/106 (73%), Positives = 93/106 (87%)
Frame = +3
Query: 6 INCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKKVLQGVVIRQR 185
INCADN+GAKN+YIISV G K RLNRLP+A VGDMV+ +VKKGKP+LRKKV+ VV+RQR
Sbjct: 26 INCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVVVRQR 85
Query: 186 KLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 323
K ++RKDG + FEDNAGV+VN KGEMKGSAITGP+ KECAD+WP+
Sbjct: 86 KPWRRKDGVFMYFEDNAGVIVNAKGEMKGSAITGPIGKECADLWPR 131
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,713,010
Number of Sequences: 369166
Number of extensions: 821886
Number of successful extensions: 2098
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2026
length of database: 68,354,980
effective HSP length: 92
effective length of database: 51,359,360
effective search space used: 1694858880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)