Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_C06
(452 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P49906|TAF11_DROME Transcription initiation factor TFIID... 93 2e-19
sp|Q15544|TAF11_HUMAN Transcription initiation factor TFIID... 89 3e-18
sp|Q99JX1|TAF11_MOUSE Transcription initiation factor TFIID... 89 3e-18
sp|Q5RA91|TAF11_PONPY Transcription initiation factor TFIID... 89 3e-18
sp|Q5U1X0|TAF11_RAT Transcription initiation factor TFIID s... 89 3e-18
>sp|P49906|TAF11_DROME Transcription initiation factor TFIID subunit 11 (Transcription
initiation factor TFIID 28 kDa subunit beta) (p28-beta)
(TAFII30 beta)
Length = 196
Score = 93.2 bits (230), Expect = 2e-19
Identities = 42/73 (57%), Positives = 59/73 (80%)
Frame = +3
Query: 15 KELKRVEDRKQVALIAHFNEEQLNRFEMYRRATFAKATVKRLMQSVTSSAITQNVIIAMS 194
KEL+ E + L+++F EEQL+R+EMYRR+ F KA VKRLMQ++T +++QNV+IAMS
Sbjct: 79 KELEEEERERMQVLVSNFTEEQLDRYEMYRRSAFPKAAVKRLMQTITGCSVSQNVVIAMS 138
Query: 195 GSAKVFIGEIIEE 233
G AKVF+GE++EE
Sbjct: 139 GIAKVFVGEVVEE 151
Score = 33.9 bits (76), Expect = 0.17
Identities = 16/33 (48%), Positives = 23/33 (69%)
Frame = +2
Query: 275 ALDHRDYLKETGPLQPKHVKESVRRLQNKALIP 373
ALD + E+G LQPK ++E+VRRL+ K +P
Sbjct: 152 ALDVMEAQGESGALQPKFIREAVRRLRTKDRMP 184
>sp|Q15544|TAF11_HUMAN Transcription initiation factor TFIID subunit 11 (Transcription
initiation factor TFIID 28 kDa subunit) (TAF(II)28)
(TAFII-28) (TAFII28) (TFIID subunit p30-beta)
Length = 211
Score = 89.4 bits (220), Expect = 3e-18
Identities = 39/67 (58%), Positives = 57/67 (85%)
Frame = +3
Query: 33 EDRKQVALIAHFNEEQLNRFEMYRRATFAKATVKRLMQSVTSSAITQNVIIAMSGSAKVF 212
E +K L++ F+EEQLNR+EMYRR+ F KA +KRL+QS+T ++++QNV+IAMSG +KVF
Sbjct: 102 EIQKMQILVSSFSEEQLNRYEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVF 161
Query: 213 IGEIIEE 233
+GE++EE
Sbjct: 162 VGEVVEE 168
Score = 38.5 bits (88), Expect = 0.007
Identities = 19/36 (52%), Positives = 25/36 (69%)
Frame = +2
Query: 275 ALDHRDYLKETGPLQPKHVKESVRRLQNKALIPAKK 382
ALD + E PLQPKH++E+VRRL++K IP K
Sbjct: 169 ALDVCEKWGEMPPLQPKHMREAVRRLKSKGQIPNSK 204
>sp|Q99JX1|TAF11_MOUSE Transcription initiation factor TFIID subunit 11 (Transcription
initiation factor TFIID 28 kDa subunit) (TAF(II)28)
(TAFII-28) (TAFII28) (TFIID subunit p30-beta)
Length = 211
Score = 89.4 bits (220), Expect = 3e-18
Identities = 39/67 (58%), Positives = 57/67 (85%)
Frame = +3
Query: 33 EDRKQVALIAHFNEEQLNRFEMYRRATFAKATVKRLMQSVTSSAITQNVIIAMSGSAKVF 212
E +K L++ F+EEQLNR+EMYRR+ F KA +KRL+QS+T ++++QNV+IAMSG +KVF
Sbjct: 102 EIQKMQILVSSFSEEQLNRYEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVF 161
Query: 213 IGEIIEE 233
+GE++EE
Sbjct: 162 VGEVVEE 168
Score = 40.8 bits (94), Expect = 0.001
Identities = 20/36 (55%), Positives = 26/36 (72%)
Frame = +2
Query: 275 ALDHRDYLKETGPLQPKHVKESVRRLQNKALIPAKK 382
ALD + ET PLQPKH++E+VRRL++K IP K
Sbjct: 169 ALDVCEKWGETPPLQPKHMREAVRRLKSKGQIPNSK 204
>sp|Q5RA91|TAF11_PONPY Transcription initiation factor TFIID subunit 11 (Transcription
initiation factor TFIID 28 kDa subunit) (TAF(II)28)
(TAFII-28) (TAFII28) (TFIID subunit p30-beta)
Length = 211
Score = 89.4 bits (220), Expect = 3e-18
Identities = 39/67 (58%), Positives = 57/67 (85%)
Frame = +3
Query: 33 EDRKQVALIAHFNEEQLNRFEMYRRATFAKATVKRLMQSVTSSAITQNVIIAMSGSAKVF 212
E +K L++ F+EEQLNR+EMYRR+ F KA +KRL+QS+T ++++QNV+IAMSG +KVF
Sbjct: 102 EIQKMQILVSSFSEEQLNRYEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVF 161
Query: 213 IGEIIEE 233
+GE++EE
Sbjct: 162 VGEVVEE 168
Score = 38.5 bits (88), Expect = 0.007
Identities = 19/36 (52%), Positives = 25/36 (69%)
Frame = +2
Query: 275 ALDHRDYLKETGPLQPKHVKESVRRLQNKALIPAKK 382
ALD + E PLQPKH++E+VRRL++K IP K
Sbjct: 169 ALDVCEKWGEMPPLQPKHMREAVRRLKSKGQIPNSK 204
>sp|Q5U1X0|TAF11_RAT Transcription initiation factor TFIID subunit 11 (Transcription
initiation factor TFIID 28 kDa subunit) (TAF(II)28)
(TAFII-28) (TAFII28) (TFIID subunit p30-beta)
Length = 211
Score = 89.4 bits (220), Expect = 3e-18
Identities = 39/67 (58%), Positives = 57/67 (85%)
Frame = +3
Query: 33 EDRKQVALIAHFNEEQLNRFEMYRRATFAKATVKRLMQSVTSSAITQNVIIAMSGSAKVF 212
E +K L++ F+EEQLNR+EMYRR+ F KA +KRL+QS+T ++++QNV+IAMSG +KVF
Sbjct: 102 EIQKMQILVSSFSEEQLNRYEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVF 161
Query: 213 IGEIIEE 233
+GE++EE
Sbjct: 162 VGEVVEE 168
Score = 38.5 bits (88), Expect = 0.007
Identities = 19/36 (52%), Positives = 25/36 (69%)
Frame = +2
Query: 275 ALDHRDYLKETGPLQPKHVKESVRRLQNKALIPAKK 382
ALD + E PLQPKH++E+VRRL++K IP K
Sbjct: 169 ALDVCEKWGEMPPLQPKHMREAVRRLKSKGQIPNSK 204
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,865,985
Number of Sequences: 369166
Number of extensions: 833702
Number of successful extensions: 2394
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2394
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2435140505
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)