Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_C02
(435 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q71V39|EF1A2_RABIT Elongation factor 1-alpha 2 (EF-1-alp... 191 6e-49
sp|P62631|EF1A2_MOUSE Elongation factor 1-alpha 2 (EF-1-alp... 190 1e-48
sp|P28295|EF1A_ABSGL Elongation factor 1-alpha (EF-1-alpha) 190 1e-48
sp|P06805|EF1A1_RHIRA Elongation factor 1-alpha (EF-1-alpha) 188 4e-48
sp|P14864|EF1A2_RHIRA Elongation factor 1-alpha (EF-1-alpha) 188 4e-48
sp|P17508|EF1A3_XENLA Elongation factor 1-alpha, oocyte for... 187 1e-47
sp|P27592|EF1A_ONCVO Elongation factor 1-alpha (EF-1-alpha) 186 2e-47
sp|P17507|EF1A2_XENLA Elongation factor 1-alpha, oocyte for... 185 3e-47
sp|O42820|EF1A_SCHCO Elongation factor 1-alpha (EF-1-alpha) 184 5e-47
sp|P10126|EF1A1_MOUSE Elongation factor 1-alpha 1 (EF-1-alp... 184 7e-47
>sp|Q71V39|EF1A2_RABIT Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
sp|Q05639|EF1A2_HUMAN Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
Length = 463
Score = 191 bits (485), Expect = 6e-49
Identities = 89/115 (77%), Positives = 100/115 (86%)
Frame = +1
Query: 1 NVCSDSKSDPVRQATDFVAQVIITNHPGEIHAGYSPVLDCHTAHIACKFAELMKKIDRRS 180
NVC DSKSDP ++A F +QVII NHPG+I AGYSPV+DCHTAHIACKFAEL +KIDRRS
Sbjct: 324 NVCGDSKSDPPQEAAQFTSQVIILNHPGQISAGYSPVIDCHTAHIACKFAELKEKIDRRS 383
Query: 181 GKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 345
GK LED PK KSGDA +V +VP KPMCVE+FS+YPPLGRFAVRDM+QTVAVGVI
Sbjct: 384 GKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVI 438
>sp|P62631|EF1A2_MOUSE Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
sp|P62632|EF1A2_RAT Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
Length = 463
Score = 190 bits (482), Expect = 1e-48
Identities = 88/115 (76%), Positives = 100/115 (86%)
Frame = +1
Query: 1 NVCSDSKSDPVRQATDFVAQVIITNHPGEIHAGYSPVLDCHTAHIACKFAELMKKIDRRS 180
NVC DSK+DP ++A F +QVII NHPG+I AGYSPV+DCHTAHIACKFAEL +KIDRRS
Sbjct: 324 NVCGDSKADPPQEAAQFTSQVIILNHPGQISAGYSPVIDCHTAHIACKFAELKEKIDRRS 383
Query: 181 GKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 345
GK LED PK KSGDA +V +VP KPMCVE+FS+YPPLGRFAVRDM+QTVAVGVI
Sbjct: 384 GKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVI 438
>sp|P28295|EF1A_ABSGL Elongation factor 1-alpha (EF-1-alpha)
Length = 458
Score = 190 bits (482), Expect = 1e-48
Identities = 86/115 (74%), Positives = 103/115 (89%)
Frame = +1
Query: 1 NVCSDSKSDPVRQATDFVAQVIITNHPGEIHAGYSPVLDCHTAHIACKFAELMKKIDRRS 180
NVCSDSK+DP ++A F AQVI+ NHPG+I AGY+PVLDCHTAHIACKFAEL++KIDRRS
Sbjct: 322 NVCSDSKNDPAKEAGSFTAQVIVLNHPGQIGAGYAPVLDCHTAHIACKFAELLEKIDRRS 381
Query: 181 GKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 345
GK LED PK KSGD+ +V+++PSKPMCVE +++YPPLGRFAVRDM+QTVAVGVI
Sbjct: 382 GKKLEDAPKFVKSGDSAIVKMIPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVI 436
>sp|P06805|EF1A1_RHIRA Elongation factor 1-alpha (EF-1-alpha)
Length = 458
Score = 188 bits (478), Expect = 4e-48
Identities = 85/115 (73%), Positives = 103/115 (89%)
Frame = +1
Query: 1 NVCSDSKSDPVRQATDFVAQVIITNHPGEIHAGYSPVLDCHTAHIACKFAELMKKIDRRS 180
NVCSDSK+DP +++ F AQVII NHPG+I AGY+PVLDCHTAHIACKF+EL++KIDRRS
Sbjct: 322 NVCSDSKNDPAKESASFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFSELIEKIDRRS 381
Query: 181 GKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 345
GK +ED PK KSGD+ +V++VPSKPMCVE +++YPPLGRFAVRDM+QTVAVGVI
Sbjct: 382 GKKMEDSPKFVKSGDSAIVKMVPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVI 436
>sp|P14864|EF1A2_RHIRA Elongation factor 1-alpha (EF-1-alpha)
Length = 458
Score = 188 bits (478), Expect = 4e-48
Identities = 85/115 (73%), Positives = 103/115 (89%)
Frame = +1
Query: 1 NVCSDSKSDPVRQATDFVAQVIITNHPGEIHAGYSPVLDCHTAHIACKFAELMKKIDRRS 180
NVCSDSK+DP +++ F AQVII NHPG+I AGY+PVLDCHTAHIACKF+EL++KIDRRS
Sbjct: 322 NVCSDSKNDPAKESASFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFSELIEKIDRRS 381
Query: 181 GKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 345
GK +ED PK KSGD+ +V++VPSKPMCVE +++YPPLGRFAVRDM+QTVAVGVI
Sbjct: 382 GKKMEDSPKFVKSGDSAIVKMVPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVI 436
>sp|P17508|EF1A3_XENLA Elongation factor 1-alpha, oocyte form (EF-1-alpha-O1) (EF-1AO1)
Length = 461
Score = 187 bits (474), Expect = 1e-47
Identities = 89/115 (77%), Positives = 98/115 (85%)
Frame = +1
Query: 1 NVCSDSKSDPVRQATDFVAQVIITNHPGEIHAGYSPVLDCHTAHIACKFAELMKKIDRRS 180
NV DSK+DP QA F AQVII NHPG+I AGY+PVLDCHTAHIACKFAEL +KIDRRS
Sbjct: 324 NVAGDSKNDPPMQAGSFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKQKIDRRS 383
Query: 181 GKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 345
GK LED PK KSGDA +V ++P KPMCVETFS+YPPLGRFAVRDM+QTVAVGVI
Sbjct: 384 GKKLEDDPKFLKSGDAAIVEMIPGKPMCVETFSDYPPLGRFAVRDMRQTVAVGVI 438
>sp|P27592|EF1A_ONCVO Elongation factor 1-alpha (EF-1-alpha)
Length = 464
Score = 186 bits (471), Expect = 2e-47
Identities = 85/115 (73%), Positives = 101/115 (87%)
Frame = +1
Query: 1 NVCSDSKSDPVRQATDFVAQVIITNHPGEIHAGYSPVLDCHTAHIACKFAELMKKIDRRS 180
+V SDSK+DP ++ F AQVII NHPG+I AGY+PVLDCHTAHIACKFAEL +K+DRRS
Sbjct: 324 SVASDSKNDPAKETKMFTAQVIIMNHPGQISAGYTPVLDCHTAHIACKFAELKEKVDRRS 383
Query: 181 GKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 345
GK +ED PK KSGDAG++ L+P+KP+CVETF+EYPPLGRFAVRDM+QTVAVGVI
Sbjct: 384 GKKVEDNPKSLKSGDAGIIDLIPTKPLCVETFTEYPPLGRFAVRDMRQTVAVGVI 438
>sp|P17507|EF1A2_XENLA Elongation factor 1-alpha, oocyte form (EF-1-alpha-O) (EF-1AO) (42S
p48)
Length = 461
Score = 185 bits (470), Expect = 3e-47
Identities = 88/115 (76%), Positives = 98/115 (85%)
Frame = +1
Query: 1 NVCSDSKSDPVRQATDFVAQVIITNHPGEIHAGYSPVLDCHTAHIACKFAELMKKIDRRS 180
NV DSK+DP QA F AQVII NHPG+I AGY+PVLDCHTAHIACKFAEL +KIDRRS
Sbjct: 324 NVAGDSKNDPPMQAGSFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKQKIDRRS 383
Query: 181 GKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 345
GK LED PK KSGDA +V ++P KPMCVE+FS+YPPLGRFAVRDM+QTVAVGVI
Sbjct: 384 GKKLEDDPKFLKSGDAAIVEMIPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVI 438
>sp|O42820|EF1A_SCHCO Elongation factor 1-alpha (EF-1-alpha)
Length = 460
Score = 184 bits (468), Expect = 5e-47
Identities = 86/115 (74%), Positives = 102/115 (88%)
Frame = +1
Query: 1 NVCSDSKSDPVRQATDFVAQVIITNHPGEIHAGYSPVLDCHTAHIACKFAELMKKIDRRS 180
NV SDSK+DP ++A F AQVI+ NHPG+I AGY+PVLDCHTAHIACKFAEL++KIDRR+
Sbjct: 322 NVASDSKNDPAKEAASFNAQVIVLNHPGQIGAGYAPVLDCHTAHIACKFAELLEKIDRRT 381
Query: 181 GKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 345
GK LE PK KSGDA +V+LVPSKPMCVE+++EYPPLGRFAVRDM+QTVAVG+I
Sbjct: 382 GKSLEASPKFVKSGDACIVKLVPSKPMCVESYNEYPPLGRFAVRDMRQTVAVGII 436
>sp|P10126|EF1A1_MOUSE Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P62630|EF1A1_RAT Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P62629|EF1A1_CRIGR Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 184 bits (467), Expect = 7e-47
Identities = 88/115 (76%), Positives = 98/115 (85%)
Frame = +1
Query: 1 NVCSDSKSDPVRQATDFVAQVIITNHPGEIHAGYSPVLDCHTAHIACKFAELMKKIDRRS 180
NV DSK+DP +A F AQVII NHPG+I AGY+PVLDCHTAHIACKFAEL +KIDRRS
Sbjct: 324 NVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRS 383
Query: 181 GKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 345
GK LED PK KSGDA +V +VP KPMCVE+FS+YPPLGRFAVRDM+QTVAVGVI
Sbjct: 384 GKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVI 438
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,066,086
Number of Sequences: 369166
Number of extensions: 891348
Number of successful extensions: 2522
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2514
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2194785120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)