Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_C01
(584 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q71V39|EF1A2_RABIT Elongation factor 1-alpha 2 (EF-1-alp... 273 2e-73
sp|P27592|EF1A_ONCVO Elongation factor 1-alpha (EF-1-alpha) 273 3e-73
sp|P62631|EF1A2_MOUSE Elongation factor 1-alpha 2 (EF-1-alp... 272 4e-73
sp|P28295|EF1A_ABSGL Elongation factor 1-alpha (EF-1-alpha) 272 4e-73
sp|P06805|EF1A1_RHIRA Elongation factor 1-alpha (EF-1-alpha) 270 2e-72
sp|P14864|EF1A2_RHIRA Elongation factor 1-alpha (EF-1-alpha) 270 2e-72
sp|P53013|EF1A_CAEEL Elongation factor 1-alpha (EF-1-alpha) 269 3e-72
sp|P17508|EF1A3_XENLA Elongation factor 1-alpha, oocyte for... 269 3e-72
sp|P17507|EF1A2_XENLA Elongation factor 1-alpha, oocyte for... 267 1e-71
sp|Q90835|EF1A_CHICK Elongation factor 1-alpha 1 (EF-1-alph... 266 3e-71
>sp|Q71V39|EF1A2_RABIT Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
sp|Q05639|EF1A2_HUMAN Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
Length = 463
Score = 273 bits (699), Expect = 2e-73
Identities = 128/162 (79%), Positives = 147/162 (90%)
Frame = +1
Query: 1 VVTFAPQGLTTEVKSVEMHHEALTEALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQ 180
VVTFAP +TTEVKSVEMHHEAL+EALPGDNVGFN+KNVSVK+IRRGNVC DSKSDP ++
Sbjct: 277 VVTFAPVNITTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDIRRGNVCGDSKSDPPQE 336
Query: 181 ATDFIAQVIIMNHPGEIHSGYSPVLDCHTAHIACKFAELLKKIDRRSGKDLEDFPKQFKS 360
A F +QVII+NHPG+I +GYSPV+DCHTAHIACKFAEL +KIDRRSGK LED PK KS
Sbjct: 337 AAQFTSQVIILNHPGQISAGYSPVIDCHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKS 396
Query: 361 GDAGLVKLIPSKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 486
GDA +V+++P KPMCVE+FS+YPPLGRFAVRDM+QTVAVGVI
Sbjct: 397 GDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVI 438
>sp|P27592|EF1A_ONCVO Elongation factor 1-alpha (EF-1-alpha)
Length = 464
Score = 273 bits (697), Expect = 3e-73
Identities = 127/162 (78%), Positives = 148/162 (91%)
Frame = +1
Query: 1 VVTFAPQGLTTEVKSVEMHHEALTEALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQ 180
+VTFAPQ LTTEVKSVEMHHEAL EALPGDNVGFN+KN+S+K+IRRG+V SDSK+DPA++
Sbjct: 277 IVTFAPQNLTTEVKSVEMHHEALQEALPGDNVGFNVKNISIKDIRRGSVASDSKNDPAKE 336
Query: 181 ATDFIAQVIIMNHPGEIHSGYSPVLDCHTAHIACKFAELLKKIDRRSGKDLEDFPKQFKS 360
F AQVIIMNHPG+I +GY+PVLDCHTAHIACKFAEL +K+DRRSGK +ED PK KS
Sbjct: 337 TKMFTAQVIIMNHPGQISAGYTPVLDCHTAHIACKFAELKEKVDRRSGKKVEDNPKSLKS 396
Query: 361 GDAGLVKLIPSKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 486
GDAG++ LIP+KP+CVETF+EYPPLGRFAVRDM+QTVAVGVI
Sbjct: 397 GDAGIIDLIPTKPLCVETFTEYPPLGRFAVRDMRQTVAVGVI 438
>sp|P62631|EF1A2_MOUSE Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
sp|P62632|EF1A2_RAT Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
Length = 463
Score = 272 bits (696), Expect = 4e-73
Identities = 127/162 (78%), Positives = 147/162 (90%)
Frame = +1
Query: 1 VVTFAPQGLTTEVKSVEMHHEALTEALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQ 180
VVTFAP +TTEVKSVEMHHEAL+EALPGDNVGFN+KNVSVK+IRRGNVC DSK+DP ++
Sbjct: 277 VVTFAPVNITTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDIRRGNVCGDSKADPPQE 336
Query: 181 ATDFIAQVIIMNHPGEIHSGYSPVLDCHTAHIACKFAELLKKIDRRSGKDLEDFPKQFKS 360
A F +QVII+NHPG+I +GYSPV+DCHTAHIACKFAEL +KIDRRSGK LED PK KS
Sbjct: 337 AAQFTSQVIILNHPGQISAGYSPVIDCHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKS 396
Query: 361 GDAGLVKLIPSKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 486
GDA +V+++P KPMCVE+FS+YPPLGRFAVRDM+QTVAVGVI
Sbjct: 397 GDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVI 438
>sp|P28295|EF1A_ABSGL Elongation factor 1-alpha (EF-1-alpha)
Length = 458
Score = 272 bits (696), Expect = 4e-73
Identities = 128/162 (79%), Positives = 147/162 (90%)
Frame = +1
Query: 1 VVTFAPQGLTTEVKSVEMHHEALTEALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQ 180
VVTFAP +TTEVKSVEMHHE L E LPGDNVGFN+KNVSVK+IRRGNVCSDSK+DPA++
Sbjct: 275 VVTFAPANVTTEVKSVEMHHEQLVEGLPGDNVGFNVKNVSVKDIRRGNVCSDSKNDPAKE 334
Query: 181 ATDFIAQVIIMNHPGEIHSGYSPVLDCHTAHIACKFAELLKKIDRRSGKDLEDFPKQFKS 360
A F AQVI++NHPG+I +GY+PVLDCHTAHIACKFAELL+KIDRRSGK LED PK KS
Sbjct: 335 AGSFTAQVIVLNHPGQIGAGYAPVLDCHTAHIACKFAELLEKIDRRSGKKLEDAPKFVKS 394
Query: 361 GDAGLVKLIPSKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 486
GD+ +VK+IPSKPMCVE +++YPPLGRFAVRDM+QTVAVGVI
Sbjct: 395 GDSAIVKMIPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVI 436
>sp|P06805|EF1A1_RHIRA Elongation factor 1-alpha (EF-1-alpha)
Length = 458
Score = 270 bits (690), Expect = 2e-72
Identities = 124/162 (76%), Positives = 147/162 (90%)
Frame = +1
Query: 1 VVTFAPQGLTTEVKSVEMHHEALTEALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQ 180
VV FAP +TTEVKSVEMHHE LTE LPGDNVGFN+KNVSVK+IRRGNVCSDSK+DPA++
Sbjct: 275 VVNFAPAAVTTEVKSVEMHHETLTEGLPGDNVGFNVKNVSVKDIRRGNVCSDSKNDPAKE 334
Query: 181 ATDFIAQVIIMNHPGEIHSGYSPVLDCHTAHIACKFAELLKKIDRRSGKDLEDFPKQFKS 360
+ F AQVII+NHPG+I +GY+PVLDCHTAHIACKF+EL++KIDRRSGK +ED PK KS
Sbjct: 335 SASFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFSELIEKIDRRSGKKMEDSPKFVKS 394
Query: 361 GDAGLVKLIPSKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 486
GD+ +VK++PSKPMCVE +++YPPLGRFAVRDM+QTVAVGVI
Sbjct: 395 GDSAIVKMVPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVI 436
>sp|P14864|EF1A2_RHIRA Elongation factor 1-alpha (EF-1-alpha)
Length = 458
Score = 270 bits (690), Expect = 2e-72
Identities = 124/162 (76%), Positives = 147/162 (90%)
Frame = +1
Query: 1 VVTFAPQGLTTEVKSVEMHHEALTEALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQ 180
VV FAP +TTEVKSVEMHHE LTE LPGDNVGFN+KNVSVK+IRRGNVCSDSK+DPA++
Sbjct: 275 VVNFAPAAVTTEVKSVEMHHETLTEGLPGDNVGFNVKNVSVKDIRRGNVCSDSKNDPAKE 334
Query: 181 ATDFIAQVIIMNHPGEIHSGYSPVLDCHTAHIACKFAELLKKIDRRSGKDLEDFPKQFKS 360
+ F AQVII+NHPG+I +GY+PVLDCHTAHIACKF+EL++KIDRRSGK +ED PK KS
Sbjct: 335 SASFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFSELIEKIDRRSGKKMEDSPKFVKS 394
Query: 361 GDAGLVKLIPSKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 486
GD+ +VK++PSKPMCVE +++YPPLGRFAVRDM+QTVAVGVI
Sbjct: 395 GDSAIVKMVPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVI 436
>sp|P53013|EF1A_CAEEL Elongation factor 1-alpha (EF-1-alpha)
Length = 463
Score = 269 bits (688), Expect = 3e-72
Identities = 126/162 (77%), Positives = 149/162 (91%)
Frame = +1
Query: 1 VVTFAPQGLTTEVKSVEMHHEALTEALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQ 180
VVTFAPQ +TTEVKSVEMHHE+L EA+PGDNVGFN+KNVSVK+IRRG+VCSDSK DPA++
Sbjct: 277 VVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKE 336
Query: 181 ATDFIAQVIIMNHPGEIHSGYSPVLDCHTAHIACKFAELLKKIDRRSGKDLEDFPKQFKS 360
A F AQVIIMNHPG+I +GY+PVLDCHTAHIACKF EL +K+DRR+GK +EDFPK KS
Sbjct: 337 ARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKS 396
Query: 361 GDAGLVKLIPSKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 486
GDAG+V+LIP+KP+CVE+F++Y PLGRFAVRDM+QTVAVGVI
Sbjct: 397 GDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVI 438
>sp|P17508|EF1A3_XENLA Elongation factor 1-alpha, oocyte form (EF-1-alpha-O1) (EF-1AO1)
Length = 461
Score = 269 bits (688), Expect = 3e-72
Identities = 128/162 (79%), Positives = 144/162 (88%)
Frame = +1
Query: 1 VVTFAPQGLTTEVKSVEMHHEALTEALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQ 180
+VTFAP +TTEVKSVEMHHEAL EALPGDNVGFN+KN+SVK+IRRGNV DSK+DP Q
Sbjct: 277 IVTFAPSNVTTEVKSVEMHHEALVEALPGDNVGFNVKNISVKDIRRGNVAGDSKNDPPMQ 336
Query: 181 ATDFIAQVIIMNHPGEIHSGYSPVLDCHTAHIACKFAELLKKIDRRSGKDLEDFPKQFKS 360
A F AQVII+NHPG+I +GY+PVLDCHTAHIACKFAEL +KIDRRSGK LED PK KS
Sbjct: 337 AGSFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKQKIDRRSGKKLEDDPKFLKS 396
Query: 361 GDAGLVKLIPSKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 486
GDA +V++IP KPMCVETFS+YPPLGRFAVRDM+QTVAVGVI
Sbjct: 397 GDAAIVEMIPGKPMCVETFSDYPPLGRFAVRDMRQTVAVGVI 438
>sp|P17507|EF1A2_XENLA Elongation factor 1-alpha, oocyte form (EF-1-alpha-O) (EF-1AO) (42S
p48)
Length = 461
Score = 267 bits (683), Expect = 1e-71
Identities = 127/162 (78%), Positives = 144/162 (88%)
Frame = +1
Query: 1 VVTFAPQGLTTEVKSVEMHHEALTEALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQ 180
+VTFAP +TTEVKSVEMHHEAL EALPGDNVGFN+KN+SVK+IRRGNV DSK+DP Q
Sbjct: 277 IVTFAPSNVTTEVKSVEMHHEALQEALPGDNVGFNVKNISVKDIRRGNVAGDSKNDPPMQ 336
Query: 181 ATDFIAQVIIMNHPGEIHSGYSPVLDCHTAHIACKFAELLKKIDRRSGKDLEDFPKQFKS 360
A F AQVII+NHPG+I +GY+PVLDCHTAHIACKFAEL +KIDRRSGK LED PK KS
Sbjct: 337 AGSFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKQKIDRRSGKKLEDDPKFLKS 396
Query: 361 GDAGLVKLIPSKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 486
GDA +V++IP KPMCVE+FS+YPPLGRFAVRDM+QTVAVGVI
Sbjct: 397 GDAAIVEMIPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVI 438
>sp|Q90835|EF1A_CHICK Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor Tu)
(EF-Tu)
Length = 462
Score = 266 bits (680), Expect = 3e-71
Identities = 127/162 (78%), Positives = 144/162 (88%)
Frame = +1
Query: 1 VVTFAPQGLTTEVKSVEMHHEALTEALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQ 180
VVTFAP +TTEVKSVEMHHEAL+EALPGDNVGFN+KNVSVK++RRGNV DSK+DP +
Sbjct: 277 VVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPME 336
Query: 181 ATDFIAQVIIMNHPGEIHSGYSPVLDCHTAHIACKFAELLKKIDRRSGKDLEDFPKQFKS 360
A F AQVII+NHPG+I +GY+PVLDCHTAHIACKFAEL +KIDRRSGK LED PK KS
Sbjct: 337 AAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKS 396
Query: 361 GDAGLVKLIPSKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 486
GDA +V +IP KPMCVE+FS+YPPLGRFAVRDM+QTVAVGVI
Sbjct: 397 GDAAIVDMIPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVI 438
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,964,489
Number of Sequences: 369166
Number of extensions: 1295797
Number of successful extensions: 4202
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4109
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4357244645
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)