Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_B17
(573 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q6P5Z2|PKN3_HUMAN Protein kinase N3 (Protein kinase PKN-... 36 0.078
sp|P45481|CBP_MOUSE CREB-binding protein 35 0.17
sp|P25306|THD1_LYCES Threonine dehydratase biosynthetic, ch... 33 0.39
sp|Q9H4A3|WNK1_HUMAN Serine/threonine-protein kinase WNK1 (... 33 0.39
sp|Q9R0I7|YLPM_MOUSE YLP motif containing protein 1 (Nuclea... 32 0.86
sp|Q96RK0|CIC_HUMAN Protein capicua homolog 32 1.1
sp|P46493|THD1_HAEIN Threonine dehydratase biosynthetic (Th... 32 1.5
sp|P12351|CYP1_YEAST CYP1 activatory protein 32 1.5
sp|Q9LXG8|WRK72_ARATH Probable WRKY transcription factor 72... 31 1.9
sp|Q8NXM4|Y711_STAAW Hypothetical UPF0230 protein MW0711 31 1.9
>sp|Q6P5Z2|PKN3_HUMAN Protein kinase N3 (Protein kinase PKN-beta) (Protein-kinase
C-related kinase 3)
Length = 889
Score = 35.8 bits (81), Expect = 0.078
Identities = 19/57 (33%), Positives = 28/57 (49%)
Frame = +1
Query: 28 SLISNPSSPGRISTPQAFVGSPTDARRSAPPAGSVQVLPIVSGVRSSYVPPQDPPRV 198
+L+ SSP IS P+ +PT R ++ PA LP + + PP PPR+
Sbjct: 460 NLLPPCSSPSTISPPKGCPRTPTTLREASDPATPSNFLPKKTPLGEEMTPPPKPPRL 516
>sp|P45481|CBP_MOUSE CREB-binding protein
Length = 2441
Score = 34.7 bits (78), Expect = 0.17
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Frame = +1
Query: 43 PSSPGRISTPQAFVGSPTDARRSAPPAGSVQVLPIVSGVRSSYVPPQ-----DPPRVGQA 207
P++P + STP + +PT S P A Q P V + V PQ PP V
Sbjct: 884 PAAPTQPSTPVSSGQTPTPTPGSVPSAAQTQSTPTVQAAAQAQVTPQPQTPVQPPSVATP 943
Query: 208 SSTLRQQILPV 240
S+ +QQ PV
Sbjct: 944 QSS-QQQPTPV 953
>sp|P25306|THD1_LYCES Threonine dehydratase biosynthetic, chloroplast precursor
(Threonine deaminase) (TD)
Length = 595
Score = 33.5 bits (75), Expect = 0.39
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +1
Query: 169 YVPPQDPPRVGQASSTLRQQILPVLKDLEAVYSRVAGG 282
Y+PP D P V + T+ +I LKD+ AV+ V GG
Sbjct: 234 YIPPFDDPGVIKGQGTIGTEINRQLKDIHAVFIPVGGG 271
>sp|Q9H4A3|WNK1_HUMAN Serine/threonine-protein kinase WNK1 (Protein kinase with no lysine
1) (Protein kinase, lysine-deficient 1) (Kinase deficient
protein)
Length = 2382
Score = 33.5 bits (75), Expect = 0.39
Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 2/115 (1%)
Frame = +1
Query: 7 TVQIPRSSLISNPSSPGRISTPQAFV--GSPTDARRSAPPAGSVQVLPIVSGVRSSYVPP 180
TV +P + +++ PG++STP + G S PP VLP+ + + + +P
Sbjct: 1720 TVALPVTPVVT----PGQVSTPVSTTTSGVKPGTAPSKPPLTKAPVLPVGTELPAGTLPS 1775
Query: 181 QDPPRVGQASSTLRQQILPVLKDLEAVYSRVAGGRHQPIAELTAAFEMVDSISPT 345
+ P S T QQ L+DL+A R I +T+A V +PT
Sbjct: 1776 EQLPPFPGPSLTQSQQ---PLEDLDAQLRRTLS---PEIITVTSAVGPVSMAAPT 1824
>sp|Q9R0I7|YLPM_MOUSE YLP motif containing protein 1 (Nuclear protein ZAP3)
Length = 1386
Score = 32.3 bits (72), Expect = 0.86
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 12/82 (14%)
Frame = +1
Query: 19 PRSSLISNPSSPGRISTPQAF-----VGSPTDA--RRSAPPAGSV-----QVLPIVSGVR 162
P S + NPS PG P ++ +G P + R SAPPA S +PI
Sbjct: 733 PPDSRLQNPSRPGMYPPPGSYRPPPPMGKPPGSIVRPSAPPARSSIPMTRPPVPIPPPPP 792
Query: 163 SSYVPPQDPPRVGQASSTLRQQ 228
PP PP + +S+++Q+
Sbjct: 793 PPPPPPPPPPVIKSKTSSVKQE 814
>sp|Q96RK0|CIC_HUMAN Protein capicua homolog
Length = 1608
Score = 32.0 bits (71), Expect = 1.1
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Frame = +1
Query: 115 PPAGSVQVLPIVSGVRSSYVPPQDPPRVGQASSTLRQQILPVLKDLEAVYSRVAGGRHQP 294
PP+ +Q+ P+ S VPP P + +S ++ +LP Y + AGG P
Sbjct: 959 PPSKIIQLTPVPVSTPSGLVPPLGPATLPGPTSQPQKVLLP--SSTRITYVQSAGGHALP 1016
Query: 295 IAELTAAFE--MVDSISPT 345
+ A+ + V S PT
Sbjct: 1017 LGTSPASSQAGTVTSYGPT 1035
>sp|P46493|THD1_HAEIN Threonine dehydratase biosynthetic (Threonine deaminase)
Length = 513
Score = 31.6 bits (70), Expect = 1.5
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +1
Query: 166 SYVPPQDPPRVGQASSTLRQQILPVLKDLEAVYSRVAGG 282
+++PP D P V TL ++L + DL+ V+ +V GG
Sbjct: 153 TFIPPFDHPLVIAGQGTLAMEMLQQVADLDYVFVQVGGG 191
>sp|P12351|CYP1_YEAST CYP1 activatory protein
Length = 1502
Score = 31.6 bits (70), Expect = 1.5
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Frame = +3
Query: 87 LSHRCETQRASCWKCPSAAHSFRS--PLKLCTSAGSPARRASLFHSETTNTPGSQGFGSS 260
+ H T KCP ++ P + S+ +PA R + HS NT +
Sbjct: 376 IDHNKHTMNPPQSKCPVDHRNYMKDYPSDMANSSSNPASRCPIDHSSMKNTAALPASTHN 435
Query: 261 LFPRGRRTSSANSRTH 308
P + S +++R+H
Sbjct: 436 TIPHHQPQSGSHARSH 451
>sp|Q9LXG8|WRK72_ARATH Probable WRKY transcription factor 72 (WRKY DNA-binding protein 72)
Length = 548
Score = 31.2 bits (69), Expect = 1.9
Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Frame = +3
Query: 54 RAYFHSSSIRGLSHRCETQRAS-----CWKCPSAAHSFRSPLKLCTSAGSPARRASLFHS 218
RAY+ + G R + QR + HS PL T A + + AS+ S
Sbjct: 247 RAYYRCTVAPGCPVRKQVQRCADDMSILITTYEGTHSHSLPLSATTMASTTSAAASMLLS 306
Query: 219 ETTNTPGSQGFGSSLFPRGRRTSSANS 299
++++P ++ G++L+ R ++ S
Sbjct: 307 GSSSSPAAEMIGNNLYDNSRFNNNNKS 333
>sp|Q8NXM4|Y711_STAAW Hypothetical UPF0230 protein MW0711
Length = 288
Score = 31.2 bits (69), Expect = 1.9
Identities = 21/85 (24%), Positives = 38/85 (44%)
Frame = +1
Query: 34 ISNPSSPGRISTPQAFVGSPTDARRSAPPAGSVQVLPIVSGVRSSYVPPQDPPRVGQASS 213
+ N GRI+ QA+VG+ +++ P++ +P + +A
Sbjct: 165 LKNLQKSGRITGAQAWVGT------------LLKMKPVLKFEDGKIIPEEKVRTKKRAIQ 212
Query: 214 TLRQQILPVLKDLEAVYSRVAGGRH 288
TL +++L ++KD E V V G H
Sbjct: 213 TLEKKVLDIVKDFEEVTLFVINGDH 237
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,019,708
Number of Sequences: 369166
Number of extensions: 1518796
Number of successful extensions: 5769
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5762
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4226258440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)