Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_B08
(413 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P53115|INO80_YEAST Putative DNA helicase INO80 (Inositol... 29 4.3
sp|P31629|ZEP2_HUMAN Human immunodeficiency virus type I en... 28 7.3
sp|P49796|RGS3_HUMAN Regulator of G-protein signaling 3 (RG... 28 9.6
>sp|P53115|INO80_YEAST Putative DNA helicase INO80 (Inositol requiering protein 80)
Length = 1489
Score = 28.9 bits (63), Expect = 4.3
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 152 QDGEDGERNDNPDVVVNNYSEEGDSRNESAED 247
+DG +GE DN + NN + D+ NE+ D
Sbjct: 217 EDGNNGEDEDNDNDNENNNDNDNDNENENDND 248
>sp|P31629|ZEP2_HUMAN Human immunodeficiency virus type I enhancer-binding protein 2
(HIV-EP2)
Length = 1833
Score = 28.1 bits (61), Expect = 7.3
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 155 DGEDGERNDNPDVVVNNYSEEGD 223
DGEDG+ ND+ D +++ ++GD
Sbjct: 1291 DGEDGDDNDDDDEDEDDFDDQGD 1313
>sp|P49796|RGS3_HUMAN Regulator of G-protein signaling 3 (RGS3) (RGP3)
Length = 1198
Score = 27.7 bits (60), Expect = 9.6
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = +2
Query: 152 QDGEDGERNDNPDVVVNNYSEEGDSRNES 238
++GE+GE +++ D +NY E +++ S
Sbjct: 889 EEGEEGEEDEDEDTSDDNYGERSEAKRSS 917
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,919,968
Number of Sequences: 369166
Number of extensions: 234649
Number of successful extensions: 621
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 1902516170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)