Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_A19
(873 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q5ZKY2|APG7L_CHICK Autophagy protein 7-like (APG7-like) ... 265 1e-70
sp|Q9D906|APG7L_MOUSE Autophagy protein 7-like (APG7-like) ... 263 4e-70
sp|O95352|APG7L_HUMAN Autophagy protein 7-like (APG7-like) ... 263 6e-70
sp|Q641Y5|APG7L_RAT Autophagy protein 7-like (APG7-like) (U... 261 2e-69
sp|Q5KC57|ATG7_CRYNE Autophagy-related protein 7 (Autophagy... 258 2e-68
sp|Q871U2|ATG7_NEUCR Autophagy-related protein 7 (Autophagy... 249 5e-66
sp|Q6CXW3|ATG7_KLULA Autophagy-related protein 7 (Autophagy... 244 2e-64
sp|Q52CS0|ATG7_MAGGR Autophagy-related protein 7 (Autophagy... 241 3e-63
sp|Q756G8|ATG7_ASHGO Autophagy-related protein 7 (Autophagy... 241 3e-63
sp|O43069|ATG7_SCHPO Autophagy-related protein 7 (Autophagy... 238 1e-62
>sp|Q5ZKY2|APG7L_CHICK Autophagy protein 7-like (APG7-like) (Ubiquitin-activating enzyme
E1-like protein)
Length = 709
Score = 265 bits (677), Expect = 1e-70
Identities = 135/268 (50%), Positives = 183/268 (68%), Gaps = 3/268 (1%)
Frame = +1
Query: 79 KFVGWEKYRNQDL-PRCAKMASSMNPLKLAENAVDLNLKLMKWRLIPDLDLEKISSTKCL 255
K VGWEK + + PR ++ M+P +LAE++VDLNLKLM WRL+P LDLEKI S KCL
Sbjct: 306 KAVGWEKNQKGGMGPRVVNLSECMDPKRLAESSVDLNLKLMCWRLVPTLDLEKIVSAKCL 365
Query: 256 LFGVGTLGCHVARQLLAWNVNNITLVDNSTVSYSNPVRQTLYKYEDSVNKVN-KAEQAEK 432
L G GTLGC VAR L+ W V IT VDN+ +SYSNPVRQ LY++ED ++ KA A +
Sbjct: 366 LLGAGTLGCSVARTLMGWGVRKITFVDNARISYSNPVRQPLYEFEDCLSGGKPKALAAAE 425
Query: 433 SLKEIYPHANVKGYTLSVPMPGHPLSQWENNVSQVEEDCLKLFNLVANHDVIFLLLDTRE 612
L++I+P N +GY +S+PMPGHP++ E ++Q +D L L+ HDV+FLL+DTRE
Sbjct: 426 RLQKIFPGVNSEGYNMSIPMPGHPVNFSEVTMAQARKDVATLEELIDAHDVVFLLMDTRE 485
Query: 613 ARWLPTMFGYIHAKLVINAALGFDTYLVMRHGV-APQPGISPSSQYTKSVASGDASGKQI 789
+RWLP + KLVINAALGFDT++VMRHG+ P+ + ++ ++ + D G +
Sbjct: 486 SRWLPAVIAASKRKLVINAALGFDTFVVMRHGLKKPKQQETGNACFSTAPGPSDLLGSSL 545
Query: 790 SQSPNYVPGDELGCYFCTDVVGPSNSTR 873
+ +PG +LGCYFC DVV P +STR
Sbjct: 546 FSN---IPGYKLGCYFCNDVVAPGDSTR 570
>sp|Q9D906|APG7L_MOUSE Autophagy protein 7-like (APG7-like) (Ubiquitin-activating enzyme
E1-like protein) (mAGP7)
Length = 698
Score = 263 bits (673), Expect = 4e-70
Identities = 138/294 (46%), Positives = 189/294 (64%), Gaps = 3/294 (1%)
Frame = +1
Query: 1 ESVRQTKTSSILTLELTGIDLKTADIKFVGWEKYRNQDL-PRCAKMASSMNPLKLAENAV 177
+ R S I ++L + K VGWEK + + PR ++ M+P +LAE++V
Sbjct: 270 QGARDVTHSIIFEVKLPEMAFSPDCPKAVGWEKNQKGGMGPRMVNLSGCMDPKRLAESSV 329
Query: 178 DLNLKLMKWRLIPDLDLEKISSTKCLLFGVGTLGCHVARQLLAWNVNNITLVDNSTVSYS 357
DLNLKLM WRL+P LDL+K+ S KCLL G GTLGC+VAR L+ W V ++T VDN+ +SYS
Sbjct: 330 DLNLKLMCWRLVPTLDLDKVVSVKCLLLGAGTLGCNVARTLMGWGVRHVTFVDNAKISYS 389
Query: 358 NPVRQTLYKYEDSVNKVN-KAEQAEKSLKEIYPHANVKGYTLSVPMPGHPLSQWENNVSQ 534
NPVRQ LY++ED + KA A + L++I+P N +G+ +S+PMPGHP++ + + Q
Sbjct: 390 NPVRQPLYEFEDCLGGGKPKALAAAERLQKIFPGVNARGFNMSIPMPGHPVNFSDVTMEQ 449
Query: 535 VEEDCLKLFNLVANHDVIFLLLDTREARWLPTMFGYIHAKLVINAALGFDTYLVMRHGV- 711
D +L L+ NHDVIFLL+DTRE+RWLPT+ KLVINAALGFDT++VMRHG+
Sbjct: 450 ARRDVEQLEQLIDNHDVIFLLMDTRESRWLPTVIAASKRKLVINAALGFDTFVVMRHGLK 509
Query: 712 APQPGISPSSQYTKSVASGDASGKQISQSPNYVPGDELGCYFCTDVVGPSNSTR 873
P+ + + VA D + +PG +LGCYFC DVV P +STR
Sbjct: 510 KPKQQGAGDLCPSHLVAPADLGSSLFAN----IPGYKLGCYFCNDVVAPGDSTR 559
>sp|O95352|APG7L_HUMAN Autophagy protein 7-like (APG7-like) (Ubiquitin-activating enzyme
E1-like protein) (hAGP7)
Length = 703
Score = 263 bits (671), Expect = 6e-70
Identities = 138/294 (46%), Positives = 188/294 (63%), Gaps = 3/294 (1%)
Frame = +1
Query: 1 ESVRQTKTSSILTLELTGIDLKTADIKFVGWEKYRNQDL-PRCAKMASSMNPLKLAENAV 177
+ R S I ++L + K VGWEK + + PR ++ M+P +LAE++V
Sbjct: 274 QGARDVAHSIIFEVKLPEMAFSPDCPKAVGWEKNQKGGMGPRMVNLSECMDPKRLAESSV 333
Query: 178 DLNLKLMKWRLIPDLDLEKISSTKCLLFGVGTLGCHVARQLLAWNVNNITLVDNSTVSYS 357
DLNLKLM WRL+P LDL+K+ S KCLL G GTLGC+VAR L+ W V +IT VDN+ +SYS
Sbjct: 334 DLNLKLMCWRLVPTLDLDKVVSVKCLLLGAGTLGCNVARTLMGWGVRHITFVDNAKISYS 393
Query: 358 NPVRQTLYKYEDSVNKVN-KAEQAEKSLKEIYPHANVKGYTLSVPMPGHPLSQWENNVSQ 534
NPVRQ LY++ED + KA A L++I+P N +G+ +S+PMPGHP++ + Q
Sbjct: 394 NPVRQPLYEFEDCLGGGKPKALAAADRLQKIFPGVNARGFNMSIPMPGHPVNFSSVTLEQ 453
Query: 535 VEEDCLKLFNLVANHDVIFLLLDTREARWLPTMFGYIHAKLVINAALGFDTYLVMRHGV- 711
D +L L+ +HDV+FLL+DTRE+RWLP + KLVINAALGFDT++VMRHG+
Sbjct: 454 ARRDVEQLEQLIESHDVVFLLMDTRESRWLPAVIAASKRKLVINAALGFDTFVVMRHGLK 513
Query: 712 APQPGISPSSQYTKSVASGDASGKQISQSPNYVPGDELGCYFCTDVVGPSNSTR 873
P+ + VAS D G + + +PG +LGCYFC DVV P +STR
Sbjct: 514 KPKQQGAGDLCPNHPVASADLLGSSLFAN---IPGYKLGCYFCNDVVAPGDSTR 564
>sp|Q641Y5|APG7L_RAT Autophagy protein 7-like (APG7-like) (Ubiquitin-activating enzyme
E1-like protein)
Length = 698
Score = 261 bits (666), Expect = 2e-69
Identities = 137/294 (46%), Positives = 188/294 (63%), Gaps = 3/294 (1%)
Frame = +1
Query: 1 ESVRQTKTSSILTLELTGIDLKTADIKFVGWEKYRNQDL-PRCAKMASSMNPLKLAENAV 177
+ R S I ++L + K VGWEK + + PR ++ M+P +LAE++V
Sbjct: 270 QGARDVTHSIIFEVKLPEMAFSPDCPKAVGWEKNQKGGMGPRMVNLSGCMDPKRLAESSV 329
Query: 178 DLNLKLMKWRLIPDLDLEKISSTKCLLFGVGTLGCHVARQLLAWNVNNITLVDNSTVSYS 357
DLNLKLM WRL+P LDL+K+ S KCLL G GTLGC+VAR L+ W V ++T VDN+ +SYS
Sbjct: 330 DLNLKLMCWRLVPTLDLDKVVSVKCLLLGAGTLGCNVARTLMGWGVRHVTFVDNAKISYS 389
Query: 358 NPVRQTLYKYEDSVNKVN-KAEQAEKSLKEIYPHANVKGYTLSVPMPGHPLSQWENNVSQ 534
NPVRQ LY++ED + KA A + L++I+P N G+ +S+PMPGHP++ + + Q
Sbjct: 390 NPVRQPLYEFEDCLGGGKPKALAAAERLQKIFPGVNASGFNMSIPMPGHPVNFSDVTMEQ 449
Query: 535 VEEDCLKLFNLVANHDVIFLLLDTREARWLPTMFGYIHAKLVINAALGFDTYLVMRHGV- 711
D +L L+ +HDVIFLL+DTRE+RWLPT+ KLVINAALGFDT++VMRHG+
Sbjct: 450 ARRDVEQLEELIDSHDVIFLLMDTRESRWLPTVIAASKRKLVINAALGFDTFVVMRHGLK 509
Query: 712 APQPGISPSSQYTKSVASGDASGKQISQSPNYVPGDELGCYFCTDVVGPSNSTR 873
P+ + + VA D + +PG +LGCYFC DVV P +STR
Sbjct: 510 KPKQQGAGDLCPSHLVAPADLGSSLFAN----IPGYKLGCYFCNDVVAPGDSTR 559
>sp|Q5KC57|ATG7_CRYNE Autophagy-related protein 7 (Autophagy-related E1-like-activating
enzyme ATG7)
Length = 675
Score = 258 bits (659), Expect = 2e-68
Identities = 134/263 (50%), Positives = 175/263 (66%), Gaps = 2/263 (0%)
Frame = +1
Query: 85 VGWEKYRNQDL-PRCAKMASSMNPLKLAENAVDLNLKLMKWRLIPDLDLEKISSTKCLLF 261
VGWE++ + L PR A + M+P +LA AVDLNLKL+KWRL+P LDL+KIS T+CLL
Sbjct: 286 VGWERHPSGKLSPRVADLGPMMDPTRLAAQAVDLNLKLIKWRLLPALDLDKISGTRCLLL 345
Query: 262 GVGTLGCHVARQLLAWNVNNITLVDNSTVSYSNPVRQTLYKYEDSVN-KVNKAEQAEKSL 438
G GTLGC+VAR L+ W V NITLVD+STVSYSNPVRQ L+ + D +N + KA A K L
Sbjct: 346 GAGTLGCYVARILMGWGVRNITLVDSSTVSYSNPVRQPLFTFSDCLNGGLPKAPTAAKKL 405
Query: 439 KEIYPHANVKGYTLSVPMPGHPLSQWENNVSQVEEDCLKLFNLVANHDVIFLLLDTREAR 618
+EI+P N +G L +PMPGHP+S ++ VE+D KL LV +HD +FLL+D+RE+R
Sbjct: 406 QEIFPGVNAQGVVLGIPMPGHPISSSDD---AVEKDVAKLEALVKSHDAVFLLMDSRESR 462
Query: 619 WLPTMFGYIHAKLVINAALGFDTYLVMRHGVAPQPGISPSSQYTKSVASGDASGKQISQS 798
WLPT+ G K+V+NAALGFD++LVMRHG A A ++I
Sbjct: 463 WLPTVLGRKWGKVVVNAALGFDSFLVMRHG-----------------AGAGAGARRIQSD 505
Query: 799 PNYVPGDELGCYFCTDVVGPSNS 867
V LGCY+C D+V P++S
Sbjct: 506 EGGVGEKGLGCYYCNDIVAPTDS 528
>sp|Q871U2|ATG7_NEUCR Autophagy-related protein 7 (Autophagy-related E1-like-activating
enzyme atg-7)
Length = 699
Score = 249 bits (637), Expect = 5e-66
Identities = 142/293 (48%), Positives = 182/293 (62%), Gaps = 5/293 (1%)
Frame = +1
Query: 10 RQTKTSSILTL---ELTGIDLKTADIKFVGWEKYRNQDL-PRCAKMASSMNPLKLAENAV 177
R S+IL L ++ ++LK K GWE+ N DL PR A +A M+P +LA+ AV
Sbjct: 283 RHEARSTILPLAMDQVGDVELKCMP-KVTGWERNGNGDLRPRVANLAEYMDPTRLADQAV 341
Query: 178 DLNLKLMKWRLIPDLDLEKISSTKCLLFGVGTLGCHVARQLLAWNVNNITLVDNSTVSYS 357
DLNLKLMKWRL P+LDL+ I +TKCLL G GTLG +V+R LL W V IT +D +VSYS
Sbjct: 342 DLNLKLMKWRLAPNLDLDAIKNTKCLLLGAGTLGSYVSRNLLGWGVRKITFIDYGSVSYS 401
Query: 358 NPVRQTLYKYEDSVNKVN-KAEQAEKSLKEIYPHANVKGYTLSVPMPGHPLSQWENNVSQ 534
NPVRQ L+K+ED N KA QA ++LKEIYP +V+GY LSVPM H + +N ++
Sbjct: 402 NPVRQPLFKFEDCHNGGKPKAIQAAEALKEIYPGVDVEGYALSVPMLDHAI----HNEAK 457
Query: 535 VEEDCLKLFNLVANHDVIFLLLDTREARWLPTMFGYIHAKLVINAALGFDTYLVMRHGVA 714
+ D KL L+ +HD IFLL+DTRE+RWLPT+ G K+V+NAALGFDTY+VMRHG A
Sbjct: 458 TKADFDKLKELIDSHDAIFLLMDTRESRWLPTLMGKAANKIVMNAALGFDTYVVMRHGAA 517
Query: 715 PQPGISPSSQYTKSVASGDASGKQISQSPNYVPGDELGCYFCTDVVGPSNSTR 873
P G + LGCYFC DVV ++S +
Sbjct: 518 PNDGSE----------------------------ETLGCYFCNDVVVAADSMK 542
>sp|Q6CXW3|ATG7_KLULA Autophagy-related protein 7 (Autophagy-related E1-like-activating
enzyme ATG7)
Length = 603
Score = 244 bits (624), Expect = 2e-64
Identities = 135/288 (46%), Positives = 175/288 (60%), Gaps = 1/288 (0%)
Frame = +1
Query: 7 VRQTKTSSILTLELTGIDLKTADIKFVGWEKYRNQDL-PRCAKMASSMNPLKLAENAVDL 183
+R +S + +TG + T +K GWEK L P+ A ++S M+P+K+AE ++DL
Sbjct: 229 LRDDNSSFAAEIRVTGSN--TGCLKVSGWEKNGLGKLAPKSADLSSLMDPVKIAEQSIDL 286
Query: 184 NLKLMKWRLIPDLDLEKISSTKCLLFGVGTLGCHVARQLLAWNVNNITLVDNSTVSYSNP 363
NLKLMKWR+ PD+DLE+I + K L+ G GTLGC+VAR LLAW ++T VDNSTVS+SNP
Sbjct: 287 NLKLMKWRIAPDIDLERIKNIKALILGSGTLGCYVARALLAWGTRHVTFVDNSTVSFSNP 346
Query: 364 VRQTLYKYEDSVNKVNKAEQAEKSLKEIYPHANVKGYTLSVPMPGHPLSQWENNVSQVEE 543
VRQ L+ +ED KAE A SLK+I+P GY L +PM GHP+S N S+ +
Sbjct: 347 VRQPLFNFEDCGRP--KAEAASDSLKKIFPSVVSAGYQLEIPMIGHPVS----NESKQRK 400
Query: 544 DCLKLFNLVANHDVIFLLLDTREARWLPTMFGYIHAKLVINAALGFDTYLVMRHGVAPQP 723
D L L+ HDVIFLL+D RE RWLP++ G +H K+VINAALGFD+YLVMRHG
Sbjct: 401 DYEILDELIRTHDVIFLLMDARETRWLPSVLGRMHEKIVINAALGFDSYLVMRHG----- 455
Query: 724 GISPSSQYTKSVASGDASGKQISQSPNYVPGDELGCYFCTDVVGPSNS 867
D LGCYFC D+V PS+S
Sbjct: 456 ----------------------------NNNDNLGCYFCNDIVAPSDS 475
>sp|Q52CS0|ATG7_MAGGR Autophagy-related protein 7 (Autophagy-related E1-like-activating
enzyme ATG7)
Length = 718
Score = 241 bits (614), Expect = 3e-63
Identities = 128/267 (47%), Positives = 168/267 (62%), Gaps = 2/267 (0%)
Frame = +1
Query: 79 KFVGWEKYRNQDLP-RCAKMASSMNPLKLAENAVDLNLKLMKWRLIPDLDLEKISSTKCL 255
K GWE++ + L R +A M+P ++A+ AVDLNLKLMKWR+ P LDLE + S KCL
Sbjct: 327 KVTGWERHPSSKLQARVISLAEYMDPTRIADQAVDLNLKLMKWRISPKLDLEAMRSLKCL 386
Query: 256 LFGVGTLGCHVARQLLAWNVNNITLVDNSTVSYSNPVRQTLYKYEDSVN-KVNKAEQAEK 432
L G GTLG +V+R L+ W V IT VD VS+SNPVRQ L+++ED ++ V KA +A +
Sbjct: 387 LLGAGTLGSYVSRNLMGWGVRKITFVDYGNVSFSNPVRQPLFEFEDCLSGGVPKAPKAAE 446
Query: 433 SLKEIYPHANVKGYTLSVPMPGHPLSQWENNVSQVEEDCLKLFNLVANHDVIFLLLDTRE 612
+LK+I P +G+ LSVPM GHP+ N +Q +ED KL L+ HDV+FLL+DTRE
Sbjct: 447 ALKKINPGVEAEGHVLSVPMLGHPVL----NEAQTKEDFEKLQQLIKAHDVVFLLMDTRE 502
Query: 613 ARWLPTMFGYIHAKLVINAALGFDTYLVMRHGVAPQPGISPSSQYTKSVASGDASGKQIS 792
+RWLPT+ G K+V+NAALGFDTY+VMRHG AP+ G +
Sbjct: 503 SRWLPTVMGKAEGKIVMNAALGFDTYVVMRHGAAPKDGTEST------------------ 544
Query: 793 QSPNYVPGDELGCYFCTDVVGPSNSTR 873
LGCYFC DVV PS+S +
Sbjct: 545 ----------LGCYFCNDVVAPSDSMK 561
>sp|Q756G8|ATG7_ASHGO Autophagy-related protein 7 (Autophagy-related E1-like-activating
enzyme ATG7)
Length = 625
Score = 241 bits (614), Expect = 3e-63
Identities = 131/288 (45%), Positives = 181/288 (62%), Gaps = 1/288 (0%)
Frame = +1
Query: 7 VRQTKTSSILTLELTGIDLKTADIKFVGWEK-YRNQDLPRCAKMASSMNPLKLAENAVDL 183
+R+T + S L L +TG + T+ +K GWE+ R P+ +++ + ++P KLAE ++DL
Sbjct: 237 LRETCSFS-LELSVTGDAMSTSQLKASGWERNVRGLLTPKISELGAIIDPTKLAEQSIDL 295
Query: 184 NLKLMKWRLIPDLDLEKISSTKCLLFGVGTLGCHVARQLLAWNVNNITLVDNSTVSYSNP 363
NLKLMKWRL+PD++L+ + + K LL G GTLGC+VAR LLAW V IT VDN +VSYSNP
Sbjct: 296 NLKLMKWRLVPDINLDIVKNCKVLLLGAGTLGCYVARSLLAWGVRKITFVDNGSVSYSNP 355
Query: 364 VRQTLYKYEDSVNKVNKAEQAEKSLKEIYPHANVKGYTLSVPMPGHPLSQWENNVSQVEE 543
VRQ L+ + D KA A ++K I+P + G+ L VPM GHPL+ + ++ ++
Sbjct: 356 VRQPLFNFTDCGQP--KATSAAAAMKAIFPLVDATGFQLEVPMIGHPLT----DEARQKK 409
Query: 544 DCLKLFNLVANHDVIFLLLDTREARWLPTMFGYIHAKLVINAALGFDTYLVMRHGVAPQP 723
D +L L+ +HD++FLL+D+RE RWLPT+ G + +KLVINAALGFD+YLVMRHG QP
Sbjct: 410 DYEELRQLIRDHDIVFLLMDSRETRWLPTILGNLESKLVINAALGFDSYLVMRHGNYEQP 469
Query: 724 GISPSSQYTKSVASGDASGKQISQSPNYVPGDELGCYFCTDVVGPSNS 867
S LGCYFC DVV PS+S
Sbjct: 470 ESS-----------------------------RLGCYFCHDVVAPSDS 488
>sp|O43069|ATG7_SCHPO Autophagy-related protein 7 (Autophagy-related E1-like-activating
enzyme atg7)
Length = 649
Score = 238 bits (608), Expect = 1e-62
Identities = 126/267 (47%), Positives = 166/267 (62%), Gaps = 1/267 (0%)
Frame = +1
Query: 70 ADIKFVGWEKYRNQDL-PRCAKMASSMNPLKLAENAVDLNLKLMKWRLIPDLDLEKISST 246
A + VGWE+ L PR +++ ++P L+E+A LNL LM+WRL+P LDL++I ++
Sbjct: 277 APLSIVGWERNGKGVLGPRVVNLSTVLDPFVLSESASTLNLSLMRWRLVPQLDLDRIQNS 336
Query: 247 KCLLFGVGTLGCHVARQLLAWNVNNITLVDNSTVSYSNPVRQTLYKYEDSVNKVNKAEQA 426
KCLL G GTLGC VAR LL+W V ++T VD STVSYSNPVRQ+L+ +ED K+ KAE A
Sbjct: 337 KCLLLGAGTLGCGVARNLLSWGVRHVTFVDYSTVSYSNPVRQSLFTFEDCKRKLPKAECA 396
Query: 427 EKSLKEIYPHANVKGYTLSVPMPGHPLSQWENNVSQVEEDCLKLFNLVANHDVIFLLLDT 606
+ LKEIYP+ GY +S+PM GHP+ +E + + D L NL++ HD IFLL DT
Sbjct: 397 AQRLKEIYPNMFSTGYNISIPMLGHPI--YEAGIEKTMHDYETLENLISTHDAIFLLTDT 454
Query: 607 REARWLPTMFGYIHAKLVINAALGFDTYLVMRHGVAPQPGISPSSQYTKSVASGDASGKQ 786
RE+RWLPT+ KL+IN+ALGFD++LVMRHG
Sbjct: 455 RESRWLPTVISTAMDKLLINSALGFDSWLVMRHG-------------------------S 489
Query: 787 ISQSPNYVPGDELGCYFCTDVVGPSNS 867
+ Q N LGCYFC D+ PSNS
Sbjct: 490 VLQKEN-----RLGCYFCNDIFAPSNS 511
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.316 0.132 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,934,548
Number of Sequences: 369166
Number of extensions: 2121996
Number of successful extensions: 6031
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5989
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8646143400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)