Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_A16
(329 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q99643|C560_HUMAN Succinate dehydrogenase cytochrome b56... 55 4e-08
sp|Q9CZB0|C560_MOUSE Succinate dehydrogenase cytochrome b56... 54 8e-08
sp|P70097|C560_CRIGR Succinate dehydrogenase cytochrome b56... 54 8e-08
sp|P35720|C560_BOVIN Succinate dehydrogenase cytochrome b56... 51 9e-07
sp|P41955|C560_CAEBR Succinate dehydrogenase cytochrome b56... 44 1e-04
sp|P41956|C560_CAEEL Succinate dehydrogenase cytochrome b56... 42 3e-04
sp|Q59659|DHSC_PARDE Succinate dehydrogenase cytochrome b55... 36 0.024
sp|P41085|DHSC_RICPR Succinate dehydrogenase cytochrome b55... 35 0.069
sp|P33421|SDH3_YEAST Succinate dehydrogenase cytochrome B s... 34 0.12
sp|Q92J99|DHSC_RICCN Succinate dehydrogenase cytochrome b55... 34 0.12
>sp|Q99643|C560_HUMAN Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor (Integral membrane protein CII-3) (QPS1)
(QPs-1) (Succinate dehydrogenase complex subunit C)
(Succinate-ubiquinone oxidoreductase cytochrome B large
subunit) (CYBL)
Length = 169
Score = 55.5 bits (132), Expect = 4e-08
Identities = 24/54 (44%), Positives = 36/54 (66%)
Frame = +3
Query: 9 LGPAIIFGAKLIMCWPLIFHYTNGMRHLAYDFAKGFDIPTTMRTGYIALALSVV 170
LGPA+I AK + +PL++H NG+RHL +D KG IP ++G + L L+V+
Sbjct: 108 LGPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVL 161
>sp|Q9CZB0|C560_MOUSE Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor (Integral membrane protein CII-3) (QPS1)
(QPs-1)
Length = 169
Score = 54.3 bits (129), Expect = 8e-08
Identities = 22/54 (40%), Positives = 35/54 (64%)
Frame = +3
Query: 9 LGPAIIFGAKLIMCWPLIFHYTNGMRHLAYDFAKGFDIPTTMRTGYIALALSVV 170
LGP +I+ AK ++ +PL++H NG+RHL +D KG IP +G + L+V+
Sbjct: 108 LGPTLIYSAKFVLVFPLMYHSLNGIRHLLWDLGKGLAIPQVWLSGVAVVVLAVL 161
>sp|P70097|C560_CRIGR Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor (Integral membrane protein CII-3) (QPS1)
(QPs-1)
Length = 169
Score = 54.3 bits (129), Expect = 8e-08
Identities = 24/62 (38%), Positives = 39/62 (62%)
Frame = +3
Query: 9 LGPAIIFGAKLIMCWPLIFHYTNGMRHLAYDFAKGFDIPTTMRTGYIALALSVVIATLFA 188
LGPA+I AK ++ +PL++H NG+RHL +D KG I ++G L L+V+ + A
Sbjct: 108 LGPALIHSAKFVLVFPLMYHSLNGIRHLIWDLGKGLSISQVYQSGVAVLMLAVLSSVGLA 167
Query: 189 SI 194
++
Sbjct: 168 AM 169
>sp|P35720|C560_BOVIN Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor (Integral membrane protein CII-3) (QPS1)
(QPs-1) (Succinate dehydrogenase complex subunit C)
Length = 169
Score = 50.8 bits (120), Expect = 9e-07
Identities = 24/62 (38%), Positives = 38/62 (61%)
Frame = +3
Query: 9 LGPAIIFGAKLIMCWPLIFHYTNGMRHLAYDFAKGFDIPTTMRTGYIALALSVVIATLFA 188
LGPA+I AK + +PL++H NG+RHL +D KG I ++G L L+V+ + A
Sbjct: 108 LGPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLTISQLHQSGVAVLVLTVLSSVGLA 167
Query: 189 SI 194
++
Sbjct: 168 AM 169
>sp|P41955|C560_CAEBR Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor
Length = 184
Score = 43.9 bits (102), Expect = 1e-04
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Frame = +3
Query: 36 KLIMCWPLIFHYTNGMRHLAYDFAKGFD-IPTTMRTGYIALALSVVIA 176
K I+ +P+IFH NG+R L +D AKG D I ++G++ +S VIA
Sbjct: 119 KYIIAFPIIFHTLNGIRFLGFDLAKGVDNIGQVYKSGWLVFGVSAVIA 166
>sp|P41956|C560_CAEEL Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor
Length = 182
Score = 42.4 bits (98), Expect = 3e-04
Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Frame = +3
Query: 36 KLIMCWPLIFHYTNGMRHLAYDFAKGF-DIPTTMRTGYIALALSVVIA 176
K I+ +P+IFH NG+R L +D AKG ++ ++GY+ LS ++A
Sbjct: 119 KYIIAFPIIFHTLNGIRFLGFDLAKGVNNVGQIYKSGYLVSGLSAILA 166
>sp|Q59659|DHSC_PARDE Succinate dehydrogenase cytochrome b556 subunit (Cytochrome b-556)
Length = 130
Score = 36.2 bits (82), Expect = 0.024
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +3
Query: 51 WPLIFHYTNGMRHLAYDFAKGFDIPTTMRTGYIALALSVVIATL 182
W L +H G+RHL YD G +I ++ +A SVV+A L
Sbjct: 79 WALWYHLLAGLRHLFYDAGYGLEIEQAHKSSQALIAGSVVLAVL 122
>sp|P41085|DHSC_RICPR Succinate dehydrogenase cytochrome b556 subunit (Cytochrome b-556)
Length = 124
Score = 34.7 bits (78), Expect = 0.069
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 63 FHYTNGMRHLAYDFAKGFDIPTTMRTGYIALALSVVIATL 182
+H NG+RHL +D GF I TG+ + S+++ L
Sbjct: 82 YHLCNGIRHLFWDIGYGFSIKAVNITGWCVVVCSILLTML 121
>sp|P33421|SDH3_YEAST Succinate dehydrogenase cytochrome B subunit, mitochondrial
precursor
Length = 198
Score = 33.9 bits (76), Expect = 0.12
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +3
Query: 66 HYTNGMRHLAYDFAKGFDIPTTMRTGYIALALSVVIATLFASI 194
HY +RHL +D AK + RTGY + + V+ T ++
Sbjct: 156 HYGGAIRHLIWDTAKELTLKGVYRTGYALIGFTAVLGTYLLTL 198
>sp|Q92J99|DHSC_RICCN Succinate dehydrogenase cytochrome b556 subunit (Cytochrome b-556)
Length = 124
Score = 33.9 bits (76), Expect = 0.12
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 63 FHYTNGMRHLAYDFAKGFDIPTTMRTGYIALALSVVIATL 182
+H NG+RHL +D GF I TG+ + SV++ L
Sbjct: 82 YHLCNGIRHLFWDIGYGFSIKLVNITGWCVVVGSVLLTVL 121
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,343,044
Number of Sequences: 369166
Number of extensions: 668399
Number of successful extensions: 1648
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1648
length of database: 68,354,980
effective HSP length: 78
effective length of database: 53,945,650
effective search space used: 1672315150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)