Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_A10
(959 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P55209|NP1L1_HUMAN Nucleosome assembly protein 1-like 1 ... 251 2e-66
sp|P28656|NP1L1_MOUSE Nucleosome assembly protein 1-like 1 ... 250 4e-66
sp|Q9Z2G8|NP1L1_RAT Nucleosome assembly protein 1-like 1 (N... 242 1e-63
sp|Q99733|NP1L4_HUMAN Nucleosome assembly protein 1-like 4 ... 231 2e-60
sp|P51860|NP1L2_MOUSE Nucleosome assembly protein 1-like 2 ... 176 7e-44
sp|Q9ULW6|NP1L2_HUMAN Nucleosome assembly protein 1-like 2 ... 175 2e-43
sp|P78920|YB31_SCHPO Putative nucleosome assembly protein C... 145 1e-34
sp|O59797|YCO6_SCHPO Putative nucleosome assembly protein C... 145 2e-34
sp|P25293|NAP1_YEAST Nucleosome assembly protein 143 8e-34
sp|Q99457|NP1L3_HUMAN Nucleosome assembly protein 1-like 3 95 3e-19
>sp|P55209|NP1L1_HUMAN Nucleosome assembly protein 1-like 1 (NAP-1 related protein) (hNRP)
Length = 391
Score = 251 bits (641), Expect = 2e-66
Identities = 126/263 (47%), Positives = 175/263 (66%), Gaps = 2/263 (0%)
Frame = +3
Query: 69 VLNNPEILASLQDEL-GLRMKAMKKFEQLPKNVKRRVRALRNLQLESIKIEESFFKELSV 245
++ NP+ILA+LQ+ L GL E LP+ VKRRV AL+NLQ++ +IE F++E+
Sbjct: 42 MMQNPQILAALQERLDGLVETPTGYIESLPRVVKRRVNALKNLQVKCAQIEAKFYEEVHD 101
Query: 246 LEAKYSHIYQDVYDKRNEIVTGKHEPTDGECEYDSEAADELAEDVNDKAIISSGDEQIDN 425
LE KY+ +YQ ++DKR EI+ +EPT+ ECE+ + DE++E++ +KA I + +
Sbjct: 102 LERKYAVLYQPLFDKRFEIINAIYEPTEEECEWKPDEEDEISEELKEKAKIEDEKKDEEK 161
Query: 426 NDVRGVPEFWLTVLENSELIRYNIQEHDKPILKHLIDMKCVLKNEDE-HGFVLEFYFSPN 602
D +G+PEFWLTV +N +L+ +QEHD+PILKHL D+K + + FVLEF+F PN
Sbjct: 162 EDPKGIPEFWLTVFKNVDLLSDMVQEHDEPILKHLKDIKVKFSDAGQPMSFVLEFHFEPN 221
Query: 603 EFFSDEKLTKEYFVHVNAPTECPFEYEGPEIVRTVGCNIHWLPGKNVTVKLVKKVQKCKN 782
E+F++E LTK Y + PF ++GPEI+ GC I W GKNVT+K +KK QK K
Sbjct: 222 EYFTNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCTGCQIDWKKGKNVTLKTIKKKQKHKG 281
Query: 783 RSEKRTVTKVVKNDSFFNFFEPP 851
R RTVTK V NDSFFNFF PP
Sbjct: 282 RGTVRTVTKTVSNDSFFNFFAPP 304
Score = 37.0 bits (84), Expect = 0.082
Identities = 14/27 (51%), Positives = 22/27 (81%)
Frame = +1
Query: 877 DIPSEIESLLESDFEMGQYIRERIIPR 957
D+ + E++L +DFE+G ++RERIIPR
Sbjct: 311 DLDDDAEAILAADFEIGHFLRERIIPR 337
>sp|P28656|NP1L1_MOUSE Nucleosome assembly protein 1-like 1 (NAP-1 related protein) (Brain
protein DN38)
Length = 391
Score = 250 bits (639), Expect = 4e-66
Identities = 126/263 (47%), Positives = 175/263 (66%), Gaps = 2/263 (0%)
Frame = +3
Query: 69 VLNNPEILASLQDEL-GLRMKAMKKFEQLPKNVKRRVRALRNLQLESIKIEESFFKELSV 245
++ NP+ILA+LQ+ L GL E LPK VKRRV AL+NLQ++ +IE F++E+
Sbjct: 42 MMQNPQILAALQERLDGLVDTPTGYIESLPKVVKRRVNALKNLQVKCAQIEAKFYEEVHD 101
Query: 246 LEAKYSHIYQDVYDKRNEIVTGKHEPTDGECEYDSEAADELAEDVNDKAIISSGDEQIDN 425
LE KY+ +YQ ++DKR EI+ +EPT+ ECE+ + DE++E++ +KA I + +
Sbjct: 102 LERKYAVLYQPLFDKRFEIINAIYEPTEEECEWKPDEEDEVSEELKEKAKIEDEKKDEEK 161
Query: 426 NDVRGVPEFWLTVLENSELIRYNIQEHDKPILKHLIDMKCVLKNEDE-HGFVLEFYFSPN 602
D +G+PEFWLTV +N +L+ +QEHD+PILKHL D+K + + FVLEF+F PN
Sbjct: 162 EDPKGIPEFWLTVFKNVDLLSDMVQEHDEPILKHLKDIKVKFSDAGQPMSFVLEFHFEPN 221
Query: 603 EFFSDEKLTKEYFVHVNAPTECPFEYEGPEIVRTVGCNIHWLPGKNVTVKLVKKVQKCKN 782
++F++E LTK Y + PF ++GPEI+ GC I W GKNVT+K +KK QK K
Sbjct: 222 DYFTNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCTGCQIDWKKGKNVTLKTIKKKQKHKG 281
Query: 783 RSEKRTVTKVVKNDSFFNFFEPP 851
R RTVTK V NDSFFNFF PP
Sbjct: 282 RGTVRTVTKTVSNDSFFNFFAPP 304
Score = 37.0 bits (84), Expect = 0.082
Identities = 14/27 (51%), Positives = 22/27 (81%)
Frame = +1
Query: 877 DIPSEIESLLESDFEMGQYIRERIIPR 957
D+ + E++L +DFE+G ++RERIIPR
Sbjct: 311 DLDDDAEAILAADFEIGHFLRERIIPR 337
>sp|Q9Z2G8|NP1L1_RAT Nucleosome assembly protein 1-like 1 (NAP-1 related protein)
Length = 390
Score = 242 bits (618), Expect = 1e-63
Identities = 124/263 (47%), Positives = 173/263 (65%), Gaps = 2/263 (0%)
Frame = +3
Query: 69 VLNNPEILASLQDEL-GLRMKAMKKFEQLPKNVKRRVRALRNLQLESIKIEESFFKELSV 245
++ NP+ILA+LQ+ L GL E LPK VKRRV AL+NLQ++ +IE F++E+
Sbjct: 42 MMQNPQILAALQERLDGLVDTPTGYIESLPKVVKRRVNALKNLQVKCAQIEAKFYEEVHD 101
Query: 246 LEAKYSHIYQDVYDKRNEIVTGKHEPTDGECEYDSEAADELAEDVNDKAIISSGDEQIDN 425
LE KY+ +YQ ++DKR EI+ +EPT+ ECE+ + DE++E++ +KA I + +
Sbjct: 102 LERKYAVLYQPLFDKRFEIINAIYEPTEEECEWKPDEEDEVSEELKEKAKIEDEKKDEEK 161
Query: 426 NDVRGVPEFWLTVLENSELIRYNIQEHDKPILKHLIDMKCVLKNEDE-HGFVLEFYFSPN 602
D +G+PEFWLTV +N +L+ +QEHD+PILKHL D+K + + F+LEF+F PN
Sbjct: 162 EDPKGIPEFWLTVFKN-DLLSDMVQEHDEPILKHLKDIKVKFSDAGQPMSFILEFHFEPN 220
Query: 603 EFFSDEKLTKEYFVHVNAPTECPFEYEGPEIVRTVGCNIHWLPGKNVTVKLVKKVQKCKN 782
E+F++E LTK Y + PF ++GPEI+ GC I W GKNVT+K +KK QK K
Sbjct: 221 EYFTNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCTGCQIDWKKGKNVTLKTIKKKQKHKG 280
Query: 783 RSEKRTVTKVVKNDSFFNFFEPP 851
R RTVTK V SFFNFF PP
Sbjct: 281 RGTVRTVTKTVSKTSFFNFFAPP 303
Score = 37.0 bits (84), Expect = 0.082
Identities = 14/27 (51%), Positives = 22/27 (81%)
Frame = +1
Query: 877 DIPSEIESLLESDFEMGQYIRERIIPR 957
D+ + E++L +DFE+G ++RERIIPR
Sbjct: 310 DLDDDXEAILAADFEIGHFLRERIIPR 336
>sp|Q99733|NP1L4_HUMAN Nucleosome assembly protein 1-like 4 (Nucleosome assembly protein
2) (NAP2)
Length = 375
Score = 231 bits (590), Expect = 2e-60
Identities = 122/282 (43%), Positives = 170/282 (60%), Gaps = 5/282 (1%)
Frame = +3
Query: 18 SRHVAHKEKNDSSVSEDVLNNPEILASLQDEL-GLRMKAMKKFEQLPKNVKRRVRALRNL 194
S A N +++ V+ NP +LA+LQ+ L + E LPK VKRR+ AL+ L
Sbjct: 14 SVEAAKNASNTEKLTDQVMQNPRVLAALQERLDNVPHTPSSYIETLPKAVKRRINALKQL 73
Query: 195 QLESIKIEESFFKELSVLEAKYSHIYQDVYDKRNEIVTGKHEPTDGECEYDSEAADE--L 368
Q+ IE F++E+ LE KY+ +YQ ++DKR E +TG EPTD E E+ SE +E L
Sbjct: 74 QVRCAHIEAKFYEEVHDLERKYAALYQPLFDKRREFITGDVEPTDAESEWHSENEEEEKL 133
Query: 369 AEDVNDKAIISS-GDEQIDNNDVRGVPEFWLTVLENSELIRYNIQEHDKPILKHLIDMKC 545
A D+ K +++ + D +G+PEFW T+ N +++ +QE+D+PILKHL D+K
Sbjct: 134 AGDMKSKVVVTEKAAATAEEPDPKGIPEFWFTIFRNVDMLSELVQEYDEPILKHLQDIKV 193
Query: 546 VLKNEDEH-GFVLEFYFSPNEFFSDEKLTKEYFVHVNAPTECPFEYEGPEIVRTVGCNIH 722
+ + FVLEF+F PN++F++ LTK Y + PF +EGPEIV GC I
Sbjct: 194 KFSDPGQPMSFVLEFHFEPNDYFTNSVLTKTYKMKSEPDKADPFSFEGPEIVDCDGCTID 253
Query: 723 WLPGKNVTVKLVKKVQKCKNRSEKRTVTKVVKNDSFFNFFEP 848
W GKNVTVK +KK QK K R RT+TK V N+SFFNFF P
Sbjct: 254 WKKGKNVTVKTIKKKQKHKGRGTVRTITKQVPNESFFNFFNP 295
Score = 35.4 bits (80), Expect = 0.24
Identities = 19/40 (47%), Positives = 24/40 (60%)
Frame = +1
Query: 838 FSNLLLNHWDGEDDIPSEIESLLESDFEMGQYIRERIIPR 957
F N L DGE + + E L SDFE+G + RERI+PR
Sbjct: 292 FFNPLKASGDGES-LDEDSEFTLASDFEIGHFFRERIVPR 330
>sp|P51860|NP1L2_MOUSE Nucleosome assembly protein 1-like 2 (Brain-specific protein,
X-linked)
Length = 460
Score = 176 bits (447), Expect = 7e-44
Identities = 100/280 (35%), Positives = 146/280 (52%), Gaps = 40/280 (14%)
Frame = +3
Query: 144 EQLPKNVKRRVRALRNLQLESIKIEESFFKELSVLEAKYSHIYQDVYDKRNEIVTGKHEP 323
E LP VK RV AL+ LQ + +E F +E +E K++ +YQ + +KR +I+ +EP
Sbjct: 102 ESLPVKVKCRVLALKKLQTRAAHLESKFLREFHDIERKFAEMYQPLLEKRRQIINAVYEP 161
Query: 324 TDGECEYDSEAADELAEDVN---------------------------------------D 386
T+ ECEY S+ D E+++ D
Sbjct: 162 TEEECEYKSDCEDYFEEEMDEEEETNGNEDGMVHEYVDEDDGYEDCYYDYDDEEEEEEED 221
Query: 387 KAIISSGDEQIDNNDVRGVPEFWLTVLENSELIRYNIQEHDKPILKHLIDMKCVLKNEDE 566
+ ++G E+++ D +G+P+FWLTVL+N E + I+++D+PILK L D+K L + E
Sbjct: 222 DSAGATGGEEVNEEDPKGIPDFWLTVLKNVEALTPMIKKYDEPILKLLTDIKVKLSDPGE 281
Query: 567 H-GFVLEFYFSPNEFFSDEKLTKEYFVHVNAPTECPFEYEGPEIVRTVGCNIHWLPGKNV 743
F LEF+F PNE+F +E LTK Y + P Y G I GC+I W GKNV
Sbjct: 282 PLSFTLEFHFKPNEYFKNELLTKTYVLKSKLACYDPHPYRGTAIEYATGCDIDWNEGKNV 341
Query: 744 TVKLVKKVQKCKNRSEKRTVTKVVKNDSFFNFFEPPTESL 863
T++ +KK Q+ + RTVT+ DSFFNFF P SL
Sbjct: 342 TLRTIKKKQRHRVWGTVRTVTEDFPKDSFFNFFSPHGISL 381
>sp|Q9ULW6|NP1L2_HUMAN Nucleosome assembly protein 1-like 2 (Brain-specific protein,
X-linked)
Length = 460
Score = 175 bits (443), Expect = 2e-43
Identities = 100/275 (36%), Positives = 143/275 (52%), Gaps = 40/275 (14%)
Frame = +3
Query: 144 EQLPKNVKRRVRALRNLQLESIKIEESFFKELSVLEAKYSHIYQDVYDKRNEIVTGKHEP 323
E LP VK RV AL+ LQ + +E F +E +E K++ +YQ + +KR +I+ +EP
Sbjct: 102 ESLPVKVKYRVLALKKLQTRAANLESKFLREFHDIERKFAEMYQPLLEKRRQIINAIYEP 161
Query: 324 TDGECEYDSEAAD---------------------------------------ELAEDVND 386
T+ ECEY S++ D E E+ +
Sbjct: 162 TEEECEYKSDSEDCDDEEMCHEEMYGNEEGMVHEYVDEDDGYEDYYYDYAVEEEEEEEEE 221
Query: 387 KAIISSGDEQIDNNDVRGVPEFWLTVLENSELIRYNIQEHDKPILKHLIDMKCVLKNEDE 566
I ++G+E + D +G+P+FWLTVL+N + + I+++D+PILK L D+K L + E
Sbjct: 222 DDIEATGEENKEEEDPKGIPDFWLTVLKNVDTLTPLIKKYDEPILKLLTDIKVKLSDPGE 281
Query: 567 H-GFVLEFYFSPNEFFSDEKLTKEYFVHVNAPTECPFEYEGPEIVRTVGCNIHWLPGKNV 743
F LEF+F PNE+F +E LTK Y + P Y G I + GC I W GKNV
Sbjct: 282 PLSFTLEFHFKPNEYFKNELLTKTYVLKSKLAYYDPHPYRGTAIEYSTGCEIDWNEGKNV 341
Query: 744 TVKLVKKVQKCKNRSEKRTVTKVVKNDSFFNFFEP 848
T+K +KK QK + RTVT+ DSFFNFF P
Sbjct: 342 TLKTIKKKQKHRIWGTIRTVTEDFPKDSFFNFFSP 376
>sp|P78920|YB31_SCHPO Putative nucleosome assembly protein C2D10.11C
Length = 379
Score = 145 bits (367), Expect = 1e-34
Identities = 93/289 (32%), Positives = 146/289 (50%), Gaps = 8/289 (2%)
Frame = +3
Query: 9 IKASRHVAHKEKNDSSVSEDVL----NNPEILASLQDELG-LRMKAMKKFEQLPKNVKRR 173
++ +R + D S ++V NNP +L+ ++ L L K+ E L V+ R
Sbjct: 35 LEKARQTLQSQLEDKSAHDEVSGLLRNNPAMLSMIEGRLSSLVGKSSGYIESLAPAVQNR 94
Query: 174 VRALRNLQLESIKIEESFFKELSVLEAKYSHIYQDVYDKRNEIVTGKHEPTDGECEYDSE 353
+ AL+ LQ + I+ F +++ LE KY YQ ++ +R EI+ G EP D E +++ E
Sbjct: 95 ITALKGLQKDCDAIQYEFRQKMLDLETKYEKKYQPIFSRRAEIIKGVSEPVDDELDHEEE 154
Query: 354 AADELAEDVNDKAIISSGDEQIDNN--DVRGVPEFWLTVLENSELIRYNIQEHDKPILKH 527
NN D +G+PEFWLT L N L+ I D+ +L+
Sbjct: 155 I--------------------FQNNLPDPKGIPEFWLTCLHNVFLVGEMITPEDENVLRS 194
Query: 528 LIDMKCVLKNEDEHGFVLEFYFSPNEFFSDEKLTKEYFVHVNAPTECPFEYEGPEIVRTV 707
L D++ + D HG+ LEF F N++F+++ LTK Y+ + F Y+ E
Sbjct: 195 LSDIRFTNLSGDVHGYKLEFEFDSNDYFTNKILTKTYYYKDDLSPSGEFLYDHAE----- 249
Query: 708 GCNIHWL-PGKNVTVKLVKKVQKCKNRSEKRTVTKVVKNDSFFNFFEPP 851
G I+W+ P KN+TV++ K Q+ + ++ R V V NDSFFNFF PP
Sbjct: 250 GDKINWIKPEKNLTVRVETKKQRNRKTNQTRLVRTTVPNDSFFNFFSPP 298
>sp|O59797|YCO6_SCHPO Putative nucleosome assembly protein C364.06
Length = 393
Score = 145 bits (365), Expect = 2e-34
Identities = 90/258 (34%), Positives = 137/258 (53%), Gaps = 1/258 (0%)
Frame = +3
Query: 84 EILASLQDELGLRMKAMKK-FEQLPKNVKRRVRALRNLQLESIKIEESFFKELSVLEAKY 260
E L ++ +LG + + +LP+ V+RR+ LR LQ +E F KEL LE Y
Sbjct: 48 ENLEAIDGKLGSLLHLTSEGVSELPEAVQRRISGLRGLQKRYSDLESQFQKELFELEKAY 107
Query: 261 SHIYQDVYDKRNEIVTGKHEPTDGECEYDSEAADELAEDVNDKAIISSGDEQIDNNDVRG 440
+ Y ++ +R+E+V G EPT+ E + EAAD E+ + S +Q +D +G
Sbjct: 108 AKKYAPIFKRRSEVVRGADEPTEEEIK-KGEAAD---ENEKKEPTSSESKKQEGGDDTKG 163
Query: 441 VPEFWLTVLENSELIRYNIQEHDKPILKHLIDMKCVLKNEDEHGFVLEFYFSPNEFFSDE 620
+PEFWLT ++N + I D+ L HL+D++ + ++ GF LEF F+ N FF+++
Sbjct: 164 IPEFWLTAMKNVLSLSEMITPEDEGALSHLVDIR--ISYMEKPGFKLEFEFAENPFFTNK 221
Query: 621 KLTKEYFVHVNAPTECPFEYEGPEIVRTVGCNIHWLPGKNVTVKLVKKVQKCKNRSEKRT 800
LTK Y+ + F Y+ E G + W ++TV+ V K Q+ KN + R
Sbjct: 222 ILTKTYYYMEESGPSNVFLYDHAE-----GDKVDWKENADLTVRTVTKKQRNKNTKQTRV 276
Query: 801 VTKVVKNDSFFNFFEPPT 854
V V DSFFNFF PPT
Sbjct: 277 VKVSVPRDSFFNFFNPPT 294
Score = 30.8 bits (68), Expect = 5.9
Identities = 13/31 (41%), Positives = 23/31 (74%)
Frame = +1
Query: 865 DGEDDIPSEIESLLESDFEMGQYIRERIIPR 957
D E + P E++ LLE D+++G+ +E++IPR
Sbjct: 300 DEESESP-ELDELLELDYQIGEDFKEKLIPR 329
>sp|P25293|NAP1_YEAST Nucleosome assembly protein
Length = 417
Score = 143 bits (360), Expect = 8e-34
Identities = 90/272 (33%), Positives = 144/272 (52%), Gaps = 9/272 (3%)
Frame = +3
Query: 63 EDVL-NNPEILASLQDELGLRMKAMKKFEQ-LPKNVKRRVRALRNLQLESIKIEESFFKE 236
ED+L N P +L S+QD LG + + LPKNVK ++ +L+ LQ E ++E+ F E
Sbjct: 57 EDILANQPLLLQSIQDRLGSLVGQDSGYVGGLPKNVKEKLLSLKTLQSELFEVEKEFQVE 116
Query: 237 LSVLEAKYSHIYQDVYDKRNEIVTGKHEPTDGECEYDSEAADELAEDVNDKAIISSGDEQ 416
+ LE K+ Y+ ++++R+ I++G+ +P + E+ E +N+ ++ +E+
Sbjct: 117 MFELENKFLQKYKPIWEQRSRIISGQEQPKPEQI----AKGQEIVESLNETELLVDEEEK 172
Query: 417 IDNN----DVRGVPEFWLTVLENSELIRYNIQEHDKPILKHLIDMKCVLKNEDEHGFVLE 584
N+ V+G+P FWLT LEN ++ I + D +L++L D+ + GF L
Sbjct: 173 AQNDSEEEQVKGIPSFWLTALENLPIVCDTITDRDAEVLEYLQDIGLEYLTDGRPGFKLL 232
Query: 585 FYF--SPNEFFSDEKLTKEYFVHVNAPTECPFEYEGPEIVRTVGCNIHWLP-GKNVTVKL 755
F F S N FF+++ L K YF F Y+ E GC I W NVTV L
Sbjct: 233 FRFDSSANPFFTNDILCKTYFYQKELGYSGDFIYDHAE-----GCEISWKDNAHNVTVDL 287
Query: 756 VKKVQKCKNRSEKRTVTKVVKNDSFFNFFEPP 851
+ Q+ K + RT+ K+ +SFFNFF+PP
Sbjct: 288 EMRKQRNKTTKQVRTIEKITPIESFFNFFDPP 319
>sp|Q99457|NP1L3_HUMAN Nucleosome assembly protein 1-like 3
Length = 506
Score = 94.7 bits (234), Expect = 3e-19
Identities = 53/142 (37%), Positives = 74/142 (52%), Gaps = 1/142 (0%)
Frame = +3
Query: 429 DVRGVPEFWLTVLENSELIRYNIQEHDKPILKHLIDMKCVLKNEDEH-GFVLEFYFSPNE 605
D +G+P++WL VL+N + + IQ++D+PILK L D+ + + EF+F PN
Sbjct: 307 DPKGIPDYWLIVLKNVDKLGPMIQKYDEPILKFLSDVSLKFSKPGQPVSYTFEFHFLPNP 366
Query: 606 FFSDEKLTKEYFVHVNAPTECPFEYEGPEIVRTVGCNIHWLPGKNVTVKLVKKVQKCKNR 785
+F +E L K Y + PF G EI GC I W GK+VTV + +
Sbjct: 367 YFRNEVLVKTYIIKAKPDHNDPFFSWGWEIEDCKGCKIDWRRGKDVTVTTTQ--SRTTAT 424
Query: 786 SEKRTVTKVVKNDSFFNFFEPP 851
E +VV N SFFNFF PP
Sbjct: 425 GEIEIQPRVVPNASFFNFFSPP 446
Score = 69.7 bits (169), Expect = 1e-11
Identities = 33/82 (40%), Positives = 57/82 (69%), Gaps = 4/82 (4%)
Frame = +3
Query: 144 EQLPKNVKRRVRALRNLQLESIKIEESFFKELSVLEAKYSHIYQDVYDKRNEIVTGKHEP 323
++LP+ V+ RV+ALRN+Q E K++ F K + LE KY+ + + +YD+R +I+ ++EP
Sbjct: 98 DRLPQAVRNRVQALRNIQDECDKVDTLFLKAIHDLERKYAELNKPLYDRRFQIINAEYEP 157
Query: 324 TDGECEYDSE----AADELAED 377
T+ ECE++SE ++DE +D
Sbjct: 158 TEEECEWNSEDEEFSSDEEVQD 179
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,520,454
Number of Sequences: 369166
Number of extensions: 1850452
Number of successful extensions: 6231
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6203
length of database: 68,354,980
effective HSP length: 111
effective length of database: 47,849,395
effective search space used: 9952674160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)