Planarian EST Database


Dr_sW_005_A08

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_005_A08
         (800 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P38981|RSSA_URECA  40S ribosomal protein SA (p40) (34/67 ...   263   5e-70
sp|P38980|RSSA_TRIGR  40S ribosomal protein SA (p40) (34/67 ...   261   1e-69
sp|P38979|RSSA_DROME  40S ribosomal protein SA (p40) (Stubar...   261   2e-69
sp|P50890|RSSA_CHICK  40S ribosomal protein SA (p40) (34/67 ...   252   7e-67
sp|P08865|RSSA_HUMAN  40S ribosomal protein SA (p40) (34/67 ...   251   1e-66
sp|P38983|RSSA_RAT  40S ribosomal protein SA (p40) (34/67 kD...   251   1e-66
sp|P14206|RSSA_MOUSE  40S ribosomal protein SA (p40) (34/67 ...   251   2e-66
sp|P38982|RSSA_CRIGR  40S ribosomal protein SA (p40) (34/67 ...   251   2e-66
sp|P26452|RSSA_BOVIN  40S ribosomal protein SA (p40) (C10 pr...   249   5e-66
sp|Q08682|RSSAA_ARATH  40S ribosomal protein SA-1 (p40) (Lam...   237   3e-62
>sp|P38981|RSSA_URECA 40S ribosomal protein SA (p40) (34/67 kDa laminin binding protein)
          Length = 317

 Score =  263 bits (671), Expect = 5e-70
 Identities = 128/211 (60%), Positives = 154/211 (72%)
 Frame = +3

Query: 60  ENDQSMMIKAGVHIGANNKNFQMDQYVFDRNKAGNFIFRLDKIFEKLQLAARAIAAVENS 239
           E D +  +    H+GANN +FQM+QYV+ R   G  I  + K +EK+ LAARAIAA+EN 
Sbjct: 12  EEDVTKFLACASHLGANNVDFQMEQYVYKRRPDGTSIINVRKTWEKVLLAARAIAAIENP 71

Query: 240 KDVCVISSRPSSQRGVLKFGRYTGANPIAGRFTPGTFTNQIQKAFREPRLLIVSDPIADH 419
            D+CVIS+RP  QR VLKF  YTGA PIAGRFTPGTFTNQIQ AFREPRLL+V+DP  DH
Sbjct: 72  ADICVISARPYGQRAVLKFAHYTGATPIAGRFTPGTFTNQIQTAFREPRLLVVTDPYTDH 131

Query: 420 QAVIESSFVNIPVIAFCNTDSIIKYVDIVIPCNNKGEQSIGLMWYLLAREVCRMKGGISR 599
           Q V E+S+VNIPVIA  NTDS +KYVDI IPCNNK   S+GLMW++LAREV R++G ISR
Sbjct: 132 QPVTEASYVNIPVIALTNTDSPLKYVDIAIPCNNKSIHSVGLMWWMLAREVLRLRGTISR 191

Query: 600 SIEWDVKVDLFINRSVEEEDKQQDDENLPQE 692
            + W+V VDLF  R  EE +K+   E    E
Sbjct: 192 EVPWEVMVDLFFYRDPEEAEKEAQAEQAAAE 222
>sp|P38980|RSSA_TRIGR 40S ribosomal protein SA (p40) (34/67 kDa laminin binding protein)
          Length = 316

 Score =  261 bits (668), Expect = 1e-69
 Identities = 129/245 (52%), Positives = 169/245 (68%), Gaps = 8/245 (3%)
 Frame = +3

Query: 60  ENDQSMMIKAGVHIGANNKNFQMDQYVFDRNKAGNFIFRLDKIFEKLQLAARAIAAVENS 239
           E+D    + +G HIG++N ++QM QYV+ R   G +I  L + +EKL +AAR I A+EN 
Sbjct: 12  EDDVQKFLASGAHIGSSNLDYQMTQYVYKRKPDGTYIINLRRTWEKLLMAARIIVAIENP 71

Query: 240 KDVCVISSRPSSQRGVLKFGRYTGANPIAGRFTPGTFTNQIQKAFREPRLLIVSDPIADH 419
            DVCVISSRP  QR VLKFG +TGA PIAGR+TPGTFTNQIQ AFREPR+LIV+DP +DH
Sbjct: 72  ADVCVISSRPYGQRAVLKFGAHTGATPIAGRYTPGTFTNQIQAAFREPRILIVTDPRSDH 131

Query: 420 QAVIESSFVNIPVIAFCNTDSIIKYVDIVIPCNNKGEQSIGLMWYLLAREVCRMKGGISR 599
           Q V E+S+VNIPVIA CNTDS ++YVDI IPCNNK   SIGLMW++L+REV R++G ISR
Sbjct: 132 QPVTEASYVNIPVIALCNTDSPLRYVDIAIPCNNKSIHSIGLMWWMLSREVLRLRGAISR 191

Query: 600 SIEWDVKVDLFINRSVEEEDKQQDD--------ENLPQEINAINIGGEEAGFGPIGQPSQ 755
            + W++  DL+  R  EE +K++ +        +  P +  A     +     P GQP  
Sbjct: 192 DVTWEIMCDLYFFRDPEEAEKEEQEARDRATAVKEEPAQPYA-EQWSDPVAVPPAGQPVA 250

Query: 756 QLDDW 770
           ++ DW
Sbjct: 251 EVTDW 255
>sp|P38979|RSSA_DROME 40S ribosomal protein SA (p40) (Stubarista protein) (Laminin
           receptor homolog) (K14)
          Length = 270

 Score =  261 bits (667), Expect = 2e-69
 Identities = 127/203 (62%), Positives = 155/203 (76%)
 Frame = +3

Query: 60  ENDQSMMIKAGVHIGANNKNFQMDQYVFDRNKAGNFIFRLDKIFEKLQLAARAIAAVENS 239
           E+D + M+ A  H+G+ N NFQM+QYV+ R   G  I  L K +EKLQLAARAI A++N 
Sbjct: 12  EDDITKMLVATTHLGSENVNFQMEQYVYKRRADGVNILNLGKTWEKLQLAARAIVAIDNP 71

Query: 240 KDVCVISSRPSSQRGVLKFGRYTGANPIAGRFTPGTFTNQIQKAFREPRLLIVSDPIADH 419
            D+ VISSRP  QR VLKF +YT   PIAGRFTPG FTNQIQ AFREPRLL+V+DP  DH
Sbjct: 72  SDIFVISSRPIGQRAVLKFAKYTDTTPIAGRFTPGAFTNQIQPAFREPRLLVVTDPNTDH 131

Query: 420 QAVIESSFVNIPVIAFCNTDSIIKYVDIVIPCNNKGEQSIGLMWYLLAREVCRMKGGISR 599
           Q ++E+S+VNIPVIAF NTDS ++Y+DI IPCNNK   SIGLMW+LLAREV R++G ISR
Sbjct: 132 QPIMEASYVNIPVIAFTNTDSPLRYIDIAIPCNNKSAHSIGLMWWLLAREVLRLRGTISR 191

Query: 600 SIEWDVKVDLFINRSVEEEDKQQ 668
           S+EW V VDLF  R  EE +K++
Sbjct: 192 SVEWPVVVDLFFYRDPEEAEKEE 214
>sp|P50890|RSSA_CHICK 40S ribosomal protein SA (p40) (34/67 kDa laminin receptor) (37LRP)
          Length = 296

 Score =  252 bits (644), Expect = 7e-67
 Identities = 123/203 (60%), Positives = 150/203 (73%)
 Frame = +3

Query: 60  ENDQSMMIKAGVHIGANNKNFQMDQYVFDRNKAGNFIFRLDKIFEKLQLAARAIAAVENS 239
           E D    + AG H+G  N +FQM+QY++ R   G +I  L + +EKL LAARAI A+EN 
Sbjct: 12  EEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENP 71

Query: 240 KDVCVISSRPSSQRGVLKFGRYTGANPIAGRFTPGTFTNQIQKAFREPRLLIVSDPIADH 419
            DV VISSR + QR VLKF   TGA PIAGRFTPGTFTNQIQ AFREPRLL+V+DP ADH
Sbjct: 72  ADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADH 131

Query: 420 QAVIESSFVNIPVIAFCNTDSIIKYVDIVIPCNNKGEQSIGLMWYLLAREVCRMKGGISR 599
           Q + E+S+VNIP IA CNTDS ++YVDI IPCNNKG  S+GLMW++LAREV RM+G ISR
Sbjct: 132 QPLTEASYVNIPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISR 191

Query: 600 SIEWDVKVDLFINRSVEEEDKQQ 668
              W+V  DL+  R  EE +K++
Sbjct: 192 EHPWEVMPDLYFYRDPEEIEKEE 214
>sp|P08865|RSSA_HUMAN 40S ribosomal protein SA (p40) (34/67 kDa laminin receptor) (Colon
           carcinoma laminin-binding protein) (NEM/1CHD4)
           (Multidrug resistance-associated protein MGr1-Ag)
          Length = 295

 Score =  251 bits (642), Expect = 1e-66
 Identities = 122/203 (60%), Positives = 150/203 (73%)
 Frame = +3

Query: 60  ENDQSMMIKAGVHIGANNKNFQMDQYVFDRNKAGNFIFRLDKIFEKLQLAARAIAAVENS 239
           E D    + AG H+G  N +FQM+QY++ R   G +I  L + +EKL LAARAI A+EN 
Sbjct: 12  EEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENP 71

Query: 240 KDVCVISSRPSSQRGVLKFGRYTGANPIAGRFTPGTFTNQIQKAFREPRLLIVSDPIADH 419
            DV VISSR + QR VLKF   TGA PIAGRFTPGTFTNQIQ AFREPRLL+V+DP ADH
Sbjct: 72  ADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADH 131

Query: 420 QAVIESSFVNIPVIAFCNTDSIIKYVDIVIPCNNKGEQSIGLMWYLLAREVCRMKGGISR 599
           Q + E+S+VN+P IA CNTDS ++YVDI IPCNNKG  S+GLMW++LAREV RM+G ISR
Sbjct: 132 QPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISR 191

Query: 600 SIEWDVKVDLFINRSVEEEDKQQ 668
              W+V  DL+  R  EE +K++
Sbjct: 192 EHPWEVMPDLYFYRDPEEIEKEE 214
>sp|P38983|RSSA_RAT 40S ribosomal protein SA (p40) (34/67 kDa laminin receptor)
          Length = 295

 Score =  251 bits (642), Expect = 1e-66
 Identities = 122/203 (60%), Positives = 150/203 (73%)
 Frame = +3

Query: 60  ENDQSMMIKAGVHIGANNKNFQMDQYVFDRNKAGNFIFRLDKIFEKLQLAARAIAAVENS 239
           E D    + AG H+G  N +FQM+QY++ R   G +I  L + +EKL LAARAI A+EN 
Sbjct: 12  EEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENP 71

Query: 240 KDVCVISSRPSSQRGVLKFGRYTGANPIAGRFTPGTFTNQIQKAFREPRLLIVSDPIADH 419
            DV VISSR + QR VLKF   TGA PIAGRFTPGTFTNQIQ AFREPRLL+V+DP ADH
Sbjct: 72  ADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADH 131

Query: 420 QAVIESSFVNIPVIAFCNTDSIIKYVDIVIPCNNKGEQSIGLMWYLLAREVCRMKGGISR 599
           Q + E+S+VN+P IA CNTDS ++YVDI IPCNNKG  S+GLMW++LAREV RM+G ISR
Sbjct: 132 QPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISR 191

Query: 600 SIEWDVKVDLFINRSVEEEDKQQ 668
              W+V  DL+  R  EE +K++
Sbjct: 192 EHPWEVMPDLYFYRDPEEIEKEE 214
>sp|P14206|RSSA_MOUSE 40S ribosomal protein SA (p40) (34/67 kDa laminin receptor)
          Length = 295

 Score =  251 bits (641), Expect = 2e-66
 Identities = 122/203 (60%), Positives = 150/203 (73%)
 Frame = +3

Query: 60  ENDQSMMIKAGVHIGANNKNFQMDQYVFDRNKAGNFIFRLDKIFEKLQLAARAIAAVENS 239
           E D   ++ AG H+G  N +FQM+QY++ R   G +I  L + +EKL LAARAI A+EN 
Sbjct: 12  EEDVLKLLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENP 71

Query: 240 KDVCVISSRPSSQRGVLKFGRYTGANPIAGRFTPGTFTNQIQKAFREPRLLIVSDPIADH 419
            DV VISSR + QR VLKF   TGA PIAGRFTPGTFTNQIQ AFREPRLL+V+DP ADH
Sbjct: 72  ADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADH 131

Query: 420 QAVIESSFVNIPVIAFCNTDSIIKYVDIVIPCNNKGEQSIGLMWYLLAREVCRMKGGISR 599
           Q + E+S+VN+P IA CNTDS + YVDI IPCNNKG  S+GLMW++LAREV RM+G ISR
Sbjct: 132 QPLTEASYVNLPTIALCNTDSPLAYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISR 191

Query: 600 SIEWDVKVDLFINRSVEEEDKQQ 668
              W+V  DL+  R  EE +K++
Sbjct: 192 EHPWEVMPDLYFYRDPEEIEKEE 214
>sp|P38982|RSSA_CRIGR 40S ribosomal protein SA (p40) (34/67 kDa laminin receptor)
          Length = 295

 Score =  251 bits (640), Expect = 2e-66
 Identities = 122/203 (60%), Positives = 150/203 (73%)
 Frame = +3

Query: 60  ENDQSMMIKAGVHIGANNKNFQMDQYVFDRNKAGNFIFRLDKIFEKLQLAARAIAAVENS 239
           E D    + AG H+G  N +FQM+QY++ R   G +I  L + +EKL LAARAI A+EN 
Sbjct: 12  EEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENP 71

Query: 240 KDVCVISSRPSSQRGVLKFGRYTGANPIAGRFTPGTFTNQIQKAFREPRLLIVSDPIADH 419
            DV VISSR + QR VLKF   TGA PIAGRFTPGTFTNQIQ AFREPRLL+V+DP ADH
Sbjct: 72  ADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADH 131

Query: 420 QAVIESSFVNIPVIAFCNTDSIIKYVDIVIPCNNKGEQSIGLMWYLLAREVCRMKGGISR 599
           Q + E+S+VN+P IA CNTDS ++YVDI IPCNNKG  S+GLMW++LAREV RM+G ISR
Sbjct: 132 QPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVRRMRGTISR 191

Query: 600 SIEWDVKVDLFINRSVEEEDKQQ 668
              W+V  DL+  R  EE +K++
Sbjct: 192 EHPWEVMPDLYFYRDPEEIEKEE 214
>sp|P26452|RSSA_BOVIN 40S ribosomal protein SA (p40) (C10 protein)
          Length = 295

 Score =  249 bits (637), Expect = 5e-66
 Identities = 121/203 (59%), Positives = 149/203 (73%)
 Frame = +3

Query: 60  ENDQSMMIKAGVHIGANNKNFQMDQYVFDRNKAGNFIFRLDKIFEKLQLAARAIAAVENS 239
           E D    + AG H+G  N +FQM+QY++ R   G +I  L + +EKL LAARAI A+EN 
Sbjct: 12  EEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENP 71

Query: 240 KDVCVISSRPSSQRGVLKFGRYTGANPIAGRFTPGTFTNQIQKAFREPRLLIVSDPIADH 419
            DV VISSR + QR VLKF   TGA PIAGRFTPG FTNQIQ AFREPRLL+V+DP ADH
Sbjct: 72  ADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGNFTNQIQAAFREPRLLVVTDPRADH 131

Query: 420 QAVIESSFVNIPVIAFCNTDSIIKYVDIVIPCNNKGEQSIGLMWYLLAREVCRMKGGISR 599
           Q + E+S+VN+P IA CNTDS ++YVDI IPCNNKG  S+GLMW++LAREV RM+G ISR
Sbjct: 132 QPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISR 191

Query: 600 SIEWDVKVDLFINRSVEEEDKQQ 668
              W+V  DL+  R  EE +K++
Sbjct: 192 EHPWEVMPDLYFYRDPEEIEKEE 214
>sp|Q08682|RSSAA_ARATH 40S ribosomal protein SA-1 (p40) (Laminin receptor homolog)
          Length = 298

 Score =  237 bits (604), Expect = 3e-62
 Identities = 118/210 (56%), Positives = 151/210 (71%)
 Frame = +3

Query: 60  ENDQSMMIKAGVHIGANNKNFQMDQYVFDRNKAGNFIFRLDKIFEKLQLAARAIAAVENS 239
           E D  MM  A VH+G  N N+QM++YVF R   G +IF L K +EKLQ+AAR I A+EN 
Sbjct: 16  EADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEKLQMAARVIVAIENP 75

Query: 240 KDVCVISSRPSSQRGVLKFGRYTGANPIAGRFTPGTFTNQIQKAFREPRLLIVSDPIADH 419
           +D+ V S+RP  QR VLKF +YTGAN IAGR TPGTFTNQ+Q +F EPRLLI++DP  DH
Sbjct: 76  QDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDH 135

Query: 420 QAVIESSFVNIPVIAFCNTDSIIKYVDIVIPCNNKGEQSIGLMWYLLAREVCRMKGGISR 599
           Q + E +  NIP+IAFC+TDS +++VDI IP NNKG+ SIG +++LLAR V +M+G I+ 
Sbjct: 136 QPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIAA 195

Query: 600 SIEWDVKVDLFINRSVEEEDKQQDDENLPQ 689
             +WDV VDLF  R  EE   + +DE  PQ
Sbjct: 196 GQKWDVMVDLFFYREPEETKPEDEDEAGPQ 225
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,533,221
Number of Sequences: 369166
Number of extensions: 1561399
Number of successful extensions: 4831
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4796
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7570361805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)