Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_A08
(800 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P38981|RSSA_URECA 40S ribosomal protein SA (p40) (34/67 ... 263 5e-70
sp|P38980|RSSA_TRIGR 40S ribosomal protein SA (p40) (34/67 ... 261 1e-69
sp|P38979|RSSA_DROME 40S ribosomal protein SA (p40) (Stubar... 261 2e-69
sp|P50890|RSSA_CHICK 40S ribosomal protein SA (p40) (34/67 ... 252 7e-67
sp|P08865|RSSA_HUMAN 40S ribosomal protein SA (p40) (34/67 ... 251 1e-66
sp|P38983|RSSA_RAT 40S ribosomal protein SA (p40) (34/67 kD... 251 1e-66
sp|P14206|RSSA_MOUSE 40S ribosomal protein SA (p40) (34/67 ... 251 2e-66
sp|P38982|RSSA_CRIGR 40S ribosomal protein SA (p40) (34/67 ... 251 2e-66
sp|P26452|RSSA_BOVIN 40S ribosomal protein SA (p40) (C10 pr... 249 5e-66
sp|Q08682|RSSAA_ARATH 40S ribosomal protein SA-1 (p40) (Lam... 237 3e-62
>sp|P38981|RSSA_URECA 40S ribosomal protein SA (p40) (34/67 kDa laminin binding protein)
Length = 317
Score = 263 bits (671), Expect = 5e-70
Identities = 128/211 (60%), Positives = 154/211 (72%)
Frame = +3
Query: 60 ENDQSMMIKAGVHIGANNKNFQMDQYVFDRNKAGNFIFRLDKIFEKLQLAARAIAAVENS 239
E D + + H+GANN +FQM+QYV+ R G I + K +EK+ LAARAIAA+EN
Sbjct: 12 EEDVTKFLACASHLGANNVDFQMEQYVYKRRPDGTSIINVRKTWEKVLLAARAIAAIENP 71
Query: 240 KDVCVISSRPSSQRGVLKFGRYTGANPIAGRFTPGTFTNQIQKAFREPRLLIVSDPIADH 419
D+CVIS+RP QR VLKF YTGA PIAGRFTPGTFTNQIQ AFREPRLL+V+DP DH
Sbjct: 72 ADICVISARPYGQRAVLKFAHYTGATPIAGRFTPGTFTNQIQTAFREPRLLVVTDPYTDH 131
Query: 420 QAVIESSFVNIPVIAFCNTDSIIKYVDIVIPCNNKGEQSIGLMWYLLAREVCRMKGGISR 599
Q V E+S+VNIPVIA NTDS +KYVDI IPCNNK S+GLMW++LAREV R++G ISR
Sbjct: 132 QPVTEASYVNIPVIALTNTDSPLKYVDIAIPCNNKSIHSVGLMWWMLAREVLRLRGTISR 191
Query: 600 SIEWDVKVDLFINRSVEEEDKQQDDENLPQE 692
+ W+V VDLF R EE +K+ E E
Sbjct: 192 EVPWEVMVDLFFYRDPEEAEKEAQAEQAAAE 222
>sp|P38980|RSSA_TRIGR 40S ribosomal protein SA (p40) (34/67 kDa laminin binding protein)
Length = 316
Score = 261 bits (668), Expect = 1e-69
Identities = 129/245 (52%), Positives = 169/245 (68%), Gaps = 8/245 (3%)
Frame = +3
Query: 60 ENDQSMMIKAGVHIGANNKNFQMDQYVFDRNKAGNFIFRLDKIFEKLQLAARAIAAVENS 239
E+D + +G HIG++N ++QM QYV+ R G +I L + +EKL +AAR I A+EN
Sbjct: 12 EDDVQKFLASGAHIGSSNLDYQMTQYVYKRKPDGTYIINLRRTWEKLLMAARIIVAIENP 71
Query: 240 KDVCVISSRPSSQRGVLKFGRYTGANPIAGRFTPGTFTNQIQKAFREPRLLIVSDPIADH 419
DVCVISSRP QR VLKFG +TGA PIAGR+TPGTFTNQIQ AFREPR+LIV+DP +DH
Sbjct: 72 ADVCVISSRPYGQRAVLKFGAHTGATPIAGRYTPGTFTNQIQAAFREPRILIVTDPRSDH 131
Query: 420 QAVIESSFVNIPVIAFCNTDSIIKYVDIVIPCNNKGEQSIGLMWYLLAREVCRMKGGISR 599
Q V E+S+VNIPVIA CNTDS ++YVDI IPCNNK SIGLMW++L+REV R++G ISR
Sbjct: 132 QPVTEASYVNIPVIALCNTDSPLRYVDIAIPCNNKSIHSIGLMWWMLSREVLRLRGAISR 191
Query: 600 SIEWDVKVDLFINRSVEEEDKQQDD--------ENLPQEINAINIGGEEAGFGPIGQPSQ 755
+ W++ DL+ R EE +K++ + + P + A + P GQP
Sbjct: 192 DVTWEIMCDLYFFRDPEEAEKEEQEARDRATAVKEEPAQPYA-EQWSDPVAVPPAGQPVA 250
Query: 756 QLDDW 770
++ DW
Sbjct: 251 EVTDW 255
>sp|P38979|RSSA_DROME 40S ribosomal protein SA (p40) (Stubarista protein) (Laminin
receptor homolog) (K14)
Length = 270
Score = 261 bits (667), Expect = 2e-69
Identities = 127/203 (62%), Positives = 155/203 (76%)
Frame = +3
Query: 60 ENDQSMMIKAGVHIGANNKNFQMDQYVFDRNKAGNFIFRLDKIFEKLQLAARAIAAVENS 239
E+D + M+ A H+G+ N NFQM+QYV+ R G I L K +EKLQLAARAI A++N
Sbjct: 12 EDDITKMLVATTHLGSENVNFQMEQYVYKRRADGVNILNLGKTWEKLQLAARAIVAIDNP 71
Query: 240 KDVCVISSRPSSQRGVLKFGRYTGANPIAGRFTPGTFTNQIQKAFREPRLLIVSDPIADH 419
D+ VISSRP QR VLKF +YT PIAGRFTPG FTNQIQ AFREPRLL+V+DP DH
Sbjct: 72 SDIFVISSRPIGQRAVLKFAKYTDTTPIAGRFTPGAFTNQIQPAFREPRLLVVTDPNTDH 131
Query: 420 QAVIESSFVNIPVIAFCNTDSIIKYVDIVIPCNNKGEQSIGLMWYLLAREVCRMKGGISR 599
Q ++E+S+VNIPVIAF NTDS ++Y+DI IPCNNK SIGLMW+LLAREV R++G ISR
Sbjct: 132 QPIMEASYVNIPVIAFTNTDSPLRYIDIAIPCNNKSAHSIGLMWWLLAREVLRLRGTISR 191
Query: 600 SIEWDVKVDLFINRSVEEEDKQQ 668
S+EW V VDLF R EE +K++
Sbjct: 192 SVEWPVVVDLFFYRDPEEAEKEE 214
>sp|P50890|RSSA_CHICK 40S ribosomal protein SA (p40) (34/67 kDa laminin receptor) (37LRP)
Length = 296
Score = 252 bits (644), Expect = 7e-67
Identities = 123/203 (60%), Positives = 150/203 (73%)
Frame = +3
Query: 60 ENDQSMMIKAGVHIGANNKNFQMDQYVFDRNKAGNFIFRLDKIFEKLQLAARAIAAVENS 239
E D + AG H+G N +FQM+QY++ R G +I L + +EKL LAARAI A+EN
Sbjct: 12 EEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENP 71
Query: 240 KDVCVISSRPSSQRGVLKFGRYTGANPIAGRFTPGTFTNQIQKAFREPRLLIVSDPIADH 419
DV VISSR + QR VLKF TGA PIAGRFTPGTFTNQIQ AFREPRLL+V+DP ADH
Sbjct: 72 ADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADH 131
Query: 420 QAVIESSFVNIPVIAFCNTDSIIKYVDIVIPCNNKGEQSIGLMWYLLAREVCRMKGGISR 599
Q + E+S+VNIP IA CNTDS ++YVDI IPCNNKG S+GLMW++LAREV RM+G ISR
Sbjct: 132 QPLTEASYVNIPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISR 191
Query: 600 SIEWDVKVDLFINRSVEEEDKQQ 668
W+V DL+ R EE +K++
Sbjct: 192 EHPWEVMPDLYFYRDPEEIEKEE 214
>sp|P08865|RSSA_HUMAN 40S ribosomal protein SA (p40) (34/67 kDa laminin receptor) (Colon
carcinoma laminin-binding protein) (NEM/1CHD4)
(Multidrug resistance-associated protein MGr1-Ag)
Length = 295
Score = 251 bits (642), Expect = 1e-66
Identities = 122/203 (60%), Positives = 150/203 (73%)
Frame = +3
Query: 60 ENDQSMMIKAGVHIGANNKNFQMDQYVFDRNKAGNFIFRLDKIFEKLQLAARAIAAVENS 239
E D + AG H+G N +FQM+QY++ R G +I L + +EKL LAARAI A+EN
Sbjct: 12 EEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENP 71
Query: 240 KDVCVISSRPSSQRGVLKFGRYTGANPIAGRFTPGTFTNQIQKAFREPRLLIVSDPIADH 419
DV VISSR + QR VLKF TGA PIAGRFTPGTFTNQIQ AFREPRLL+V+DP ADH
Sbjct: 72 ADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADH 131
Query: 420 QAVIESSFVNIPVIAFCNTDSIIKYVDIVIPCNNKGEQSIGLMWYLLAREVCRMKGGISR 599
Q + E+S+VN+P IA CNTDS ++YVDI IPCNNKG S+GLMW++LAREV RM+G ISR
Sbjct: 132 QPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISR 191
Query: 600 SIEWDVKVDLFINRSVEEEDKQQ 668
W+V DL+ R EE +K++
Sbjct: 192 EHPWEVMPDLYFYRDPEEIEKEE 214
>sp|P38983|RSSA_RAT 40S ribosomal protein SA (p40) (34/67 kDa laminin receptor)
Length = 295
Score = 251 bits (642), Expect = 1e-66
Identities = 122/203 (60%), Positives = 150/203 (73%)
Frame = +3
Query: 60 ENDQSMMIKAGVHIGANNKNFQMDQYVFDRNKAGNFIFRLDKIFEKLQLAARAIAAVENS 239
E D + AG H+G N +FQM+QY++ R G +I L + +EKL LAARAI A+EN
Sbjct: 12 EEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENP 71
Query: 240 KDVCVISSRPSSQRGVLKFGRYTGANPIAGRFTPGTFTNQIQKAFREPRLLIVSDPIADH 419
DV VISSR + QR VLKF TGA PIAGRFTPGTFTNQIQ AFREPRLL+V+DP ADH
Sbjct: 72 ADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADH 131
Query: 420 QAVIESSFVNIPVIAFCNTDSIIKYVDIVIPCNNKGEQSIGLMWYLLAREVCRMKGGISR 599
Q + E+S+VN+P IA CNTDS ++YVDI IPCNNKG S+GLMW++LAREV RM+G ISR
Sbjct: 132 QPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISR 191
Query: 600 SIEWDVKVDLFINRSVEEEDKQQ 668
W+V DL+ R EE +K++
Sbjct: 192 EHPWEVMPDLYFYRDPEEIEKEE 214
>sp|P14206|RSSA_MOUSE 40S ribosomal protein SA (p40) (34/67 kDa laminin receptor)
Length = 295
Score = 251 bits (641), Expect = 2e-66
Identities = 122/203 (60%), Positives = 150/203 (73%)
Frame = +3
Query: 60 ENDQSMMIKAGVHIGANNKNFQMDQYVFDRNKAGNFIFRLDKIFEKLQLAARAIAAVENS 239
E D ++ AG H+G N +FQM+QY++ R G +I L + +EKL LAARAI A+EN
Sbjct: 12 EEDVLKLLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENP 71
Query: 240 KDVCVISSRPSSQRGVLKFGRYTGANPIAGRFTPGTFTNQIQKAFREPRLLIVSDPIADH 419
DV VISSR + QR VLKF TGA PIAGRFTPGTFTNQIQ AFREPRLL+V+DP ADH
Sbjct: 72 ADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADH 131
Query: 420 QAVIESSFVNIPVIAFCNTDSIIKYVDIVIPCNNKGEQSIGLMWYLLAREVCRMKGGISR 599
Q + E+S+VN+P IA CNTDS + YVDI IPCNNKG S+GLMW++LAREV RM+G ISR
Sbjct: 132 QPLTEASYVNLPTIALCNTDSPLAYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISR 191
Query: 600 SIEWDVKVDLFINRSVEEEDKQQ 668
W+V DL+ R EE +K++
Sbjct: 192 EHPWEVMPDLYFYRDPEEIEKEE 214
>sp|P38982|RSSA_CRIGR 40S ribosomal protein SA (p40) (34/67 kDa laminin receptor)
Length = 295
Score = 251 bits (640), Expect = 2e-66
Identities = 122/203 (60%), Positives = 150/203 (73%)
Frame = +3
Query: 60 ENDQSMMIKAGVHIGANNKNFQMDQYVFDRNKAGNFIFRLDKIFEKLQLAARAIAAVENS 239
E D + AG H+G N +FQM+QY++ R G +I L + +EKL LAARAI A+EN
Sbjct: 12 EEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENP 71
Query: 240 KDVCVISSRPSSQRGVLKFGRYTGANPIAGRFTPGTFTNQIQKAFREPRLLIVSDPIADH 419
DV VISSR + QR VLKF TGA PIAGRFTPGTFTNQIQ AFREPRLL+V+DP ADH
Sbjct: 72 ADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADH 131
Query: 420 QAVIESSFVNIPVIAFCNTDSIIKYVDIVIPCNNKGEQSIGLMWYLLAREVCRMKGGISR 599
Q + E+S+VN+P IA CNTDS ++YVDI IPCNNKG S+GLMW++LAREV RM+G ISR
Sbjct: 132 QPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVRRMRGTISR 191
Query: 600 SIEWDVKVDLFINRSVEEEDKQQ 668
W+V DL+ R EE +K++
Sbjct: 192 EHPWEVMPDLYFYRDPEEIEKEE 214
>sp|P26452|RSSA_BOVIN 40S ribosomal protein SA (p40) (C10 protein)
Length = 295
Score = 249 bits (637), Expect = 5e-66
Identities = 121/203 (59%), Positives = 149/203 (73%)
Frame = +3
Query: 60 ENDQSMMIKAGVHIGANNKNFQMDQYVFDRNKAGNFIFRLDKIFEKLQLAARAIAAVENS 239
E D + AG H+G N +FQM+QY++ R G +I L + +EKL LAARAI A+EN
Sbjct: 12 EEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENP 71
Query: 240 KDVCVISSRPSSQRGVLKFGRYTGANPIAGRFTPGTFTNQIQKAFREPRLLIVSDPIADH 419
DV VISSR + QR VLKF TGA PIAGRFTPG FTNQIQ AFREPRLL+V+DP ADH
Sbjct: 72 ADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGNFTNQIQAAFREPRLLVVTDPRADH 131
Query: 420 QAVIESSFVNIPVIAFCNTDSIIKYVDIVIPCNNKGEQSIGLMWYLLAREVCRMKGGISR 599
Q + E+S+VN+P IA CNTDS ++YVDI IPCNNKG S+GLMW++LAREV RM+G ISR
Sbjct: 132 QPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISR 191
Query: 600 SIEWDVKVDLFINRSVEEEDKQQ 668
W+V DL+ R EE +K++
Sbjct: 192 EHPWEVMPDLYFYRDPEEIEKEE 214
>sp|Q08682|RSSAA_ARATH 40S ribosomal protein SA-1 (p40) (Laminin receptor homolog)
Length = 298
Score = 237 bits (604), Expect = 3e-62
Identities = 118/210 (56%), Positives = 151/210 (71%)
Frame = +3
Query: 60 ENDQSMMIKAGVHIGANNKNFQMDQYVFDRNKAGNFIFRLDKIFEKLQLAARAIAAVENS 239
E D MM A VH+G N N+QM++YVF R G +IF L K +EKLQ+AAR I A+EN
Sbjct: 16 EADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEKLQMAARVIVAIENP 75
Query: 240 KDVCVISSRPSSQRGVLKFGRYTGANPIAGRFTPGTFTNQIQKAFREPRLLIVSDPIADH 419
+D+ V S+RP QR VLKF +YTGAN IAGR TPGTFTNQ+Q +F EPRLLI++DP DH
Sbjct: 76 QDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDH 135
Query: 420 QAVIESSFVNIPVIAFCNTDSIIKYVDIVIPCNNKGEQSIGLMWYLLAREVCRMKGGISR 599
Q + E + NIP+IAFC+TDS +++VDI IP NNKG+ SIG +++LLAR V +M+G I+
Sbjct: 136 QPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIAA 195
Query: 600 SIEWDVKVDLFINRSVEEEDKQQDDENLPQ 689
+WDV VDLF R EE + +DE PQ
Sbjct: 196 GQKWDVMVDLFFYREPEETKPEDEDEAGPQ 225
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,533,221
Number of Sequences: 369166
Number of extensions: 1561399
Number of successful extensions: 4831
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4796
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7570361805
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)