Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Dr_sW_004_P21 (840 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|P28812|Y3568_PSEAE Hypothetical protein PA3568 261 2e-69 sp|P55912|PRPE_SALTY Propionate--CoA ligase (Propionyl-CoA ... 176 7e-44 sp|P77495|PRPE_ECOLI Propionate--CoA ligase (Propionyl-CoA ... 175 1e-43 sp|Q758X0|ACS1_ASHGO Acetyl-coenzyme A synthetase 1 (Acetat... 157 3e-38 sp|Q01574|ACS1_YEAST Acetyl-coenzyme A synthetase 1 (Acetat... 156 6e-38 sp|O60011|ACS1_KLULA Acetyl-coenzyme A synthetase 1 (Acetat... 154 3e-37 sp|Q6FLU2|ACS1_CANGA Acetyl-coenzyme A synthetase 1 (Acetat... 152 1e-36 sp|Q8NJN3|ACS2_CANAL Acetyl-coenzyme A synthetase 2 (Acetat... 143 7e-34 sp|Q8KBY0|ACSA_CHLTE Acetyl-coenzyme A synthetase (Acetate-... 141 2e-33 sp|Q6BS00|ACS2_DEBHA Acetyl-coenzyme A synthetase 2 (Acetat... 139 1e-32
>sp|P28812|Y3568_PSEAE Hypothetical protein PA3568 Length = 628 Score = 261 bits (666), Expect = 2e-69 Identities = 133/275 (48%), Positives = 176/275 (64%) Frame = +2 Query: 2 CTTIIYEGKPVGTPDSSQYFRVLNWHNPVSLFVAPTALRAIRREDPQAIHGVKYRHPRFR 181 CTT+ YEGKPV TPD+ Y+RV+ H SLF APTA+RAIR+EDP +Y R Sbjct: 300 CTTVFYEGKPVRTPDAGAYWRVIEEHRVNSLFCAPTAIRAIRKEDPHGERVKRYDLGSLR 359 Query: 182 SLFLAGEHCDVDTLSWAKEIFKVPVLDHWWQTETGWPITCPAAGLETRADLVPPPGSAGR 361 LFLAGE D T W +E PV DHWWQTETGWP+T P G+ DL GS R Sbjct: 360 HLFLAGEKLDSSTQHWLEEHTGRPVHDHWWQTETGWPVTAPCIGIAGH-DL--RAGSTNR 416 Query: 362 PVPGYDVKVLDTNTGVQLGPNQLGRIVVKLPMPPGMASTLYNNDEMFYKIFFTKFPGYYD 541 VPGY V+VLD + G LG N+ G IV+ LP+PPG A TL+ + + + + +PGYY Sbjct: 417 AVPGYHVQVLD-DEGRPLGANRQGAIVIALPLPPGCAQTLWGDHPRYLQAYLGNYPGYYH 475 Query: 542 TMDAGMVTEFGHIMVMARDDDVLNIAGHRISSGALEEACLENPCVVECAVIGLDDQLKGQ 721 T D G + E G + +M R DDV+N++GHR+S+G +EE ++ V ECAVIG+ D+LKG Sbjct: 476 TGDGGYLDEDGFVYIMGRTDDVINVSGHRLSTGEMEERVAQHQAVAECAVIGVRDELKGH 535 Query: 722 VPLALLVPDTDTIKAPEEIVSDTIKIVRDRIGAVA 826 VPL L+V D A E++ + + +VR++IGA+A Sbjct: 536 VPLGLVVLKDDAGIAAEQLQRELVALVREQIGALA 570
>sp|P55912|PRPE_SALTY Propionate--CoA ligase (Propionyl-CoA synthetase) Length = 628 Score = 176 bits (446), Expect = 7e-44 Identities = 97/261 (37%), Positives = 148/261 (56%), Gaps = 1/261 (0%) Frame = +2 Query: 8 TIIYEGKPVGTPDSSQYFRVLNWHNPVSLFVAPTALRAIRREDPQAIHGVKYRHPRFRSL 187 TI+YEG P PD +++++ + +F APTA+R +++ I + +L Sbjct: 303 TIVYEGLPT-YPDCGVWWKIVEKYQVNRMFSAPTAIRVLKKFPTAQIRN--HDLSSLEAL 359 Query: 188 FLAGEHCDVDTLSWAKEIFKVPVLDHWWQTETGWPITCPAAGLETRADLVPPPGSAGRPV 367 +LAGE D T SW E VPV+D++WQTE+GWPI A L+ R + GS G P+ Sbjct: 360 YLAGEPLDEPTASWVTETLGVPVIDNYWQTESGWPIMALARALDDRPSRL---GSPGVPM 416 Query: 368 PGYDVKVLDTNTGVQLGPNQLGRIVVKLPMPPGMASTLYNNDEMFYKIFFTKFPGY-YDT 544 GY+V++L+ TG G N+ G +V++ P+PPG T++ +D F K +++ F Y T Sbjct: 417 YGYNVQLLNEVTGEPCGINEKGMLVIEGPLPPGCIQTIWGDDARFVKTYWSLFNRQVYAT 476 Query: 545 MDAGMVTEFGHIMVMARDDDVLNIAGHRISSGALEEACLENPCVVECAVIGLDDQLKGQV 724 D G+ G+ ++ R DDV+NIAGHR+ + +EE+ P V E AV+G+ D LKGQV Sbjct: 477 FDWGIRDAEGYYFILGRTDDVINIAGHRLGTREIEESISSYPNVAEVAVVGIKDALKGQV 536 Query: 725 PLALLVPDTDTIKAPEEIVSD 787 +A ++P A E D Sbjct: 537 AVAFVIPKQSDTLADREAARD 557
>sp|P77495|PRPE_ECOLI Propionate--CoA ligase (Propionyl-CoA synthetase) Length = 628 Score = 175 bits (444), Expect = 1e-43 Identities = 96/254 (37%), Positives = 151/254 (59%), Gaps = 2/254 (0%) Frame = +2 Query: 8 TIIYEGKPVGTPDSSQYFRVLNWHNPVSLFVAPTALRAIRREDPQAIHGVKYRHPRFRSL 187 TI+YEG P PD ++ ++ + +F APTA+R +++ I K+ L Sbjct: 303 TIVYEGLPTW-PDCGVWWTIVEKYQVSRMFSAPTAIRVLKKFPTAEIR--KHDLSSLEVL 359 Query: 188 FLAGEHCDVDTLSWAKEIFKVPVLDHWWQTETGWPITCPAAGLETRADLVPPPGSAGRPV 367 +LAGE D T SW VPV+D++WQTE+GWPI A GL+ R + GS G P+ Sbjct: 360 YLAGEPLDEPTASWVSNTLDVPVIDNYWQTESGWPIMAIARGLDDRPTRL---GSPGVPM 416 Query: 368 PGYDVKVLDTNTGVQLGPNQLGRIVVKLPMPPGMASTLYNNDEMFYKIFFTKFPG-YYDT 544 GY+V++L+ TG G N+ G +VV+ P+PPG T++ +D F K +++ F Y T Sbjct: 417 YGYNVQLLNEVTGEPCGVNEKGMLVVEGPLPPGCIQTIWGDDGRFVKTYWSLFSRPVYAT 476 Query: 545 MDAGMVTEFGHIMVMARDDDVLNIAGHRISSGALEEACLENPCVVECAVIGLDDQLKGQV 724 D G+ G+ ++ R DDV+N+AGHR+ + +EE+ +P V E AV+G+ D LKGQV Sbjct: 477 FDWGIRDADGYHFILGRTDDVINVAGHRLGTREIEESISSHPGVAEVAVVGVKDALKGQV 536 Query: 725 PLALLVP-DTDTIK 763 +A ++P ++D+++ Sbjct: 537 AVAFVIPKESDSLE 550
>sp|Q758X0|ACS1_ASHGO Acetyl-coenzyme A synthetase 1 (Acetate--CoA ligase 1) (Acyl-activating enzyme 1) Length = 694 Score = 157 bits (397), Expect = 3e-38 Identities = 98/285 (34%), Positives = 147/285 (51%), Gaps = 10/285 (3%) Frame = +2 Query: 2 CTTIIYEGKPVGTPDSSQYFRVLNWHNPVSLFVAPTALRAIRREDPQAIHGVKYRHPRFR 181 CTT+++EG P P S+Y+ +++ ++ +VAPTALR ++R + G R R Sbjct: 362 CTTVVFEGTPA-YPSYSRYWDIIDKYSVTQFYVAPTALRLLKRAGDSYVDGYSLR--TLR 418 Query: 182 SLFLAGEHCDVDTLSWAKEIF---KVPVLDHWWQTETGWPITCPAAGLETRADLVPPPGS 352 SL GE + W + ++PV+D +WQTE+G + P AG T PGS Sbjct: 419 SLGTVGEPIAAEVWEWYYTVIGKREIPVIDTYWQTESGAHLVTPLAGGSTPMK----PGS 474 Query: 353 AGRPVPGYDVKVLDTNTGVQL-GPNQLGRIVVKLPMPPGMASTLYNNDEMFYKIFFTKFP 529 A P G D+ +LD TG +L GPN G + VK P P T++NN + + + + Sbjct: 475 ASFPFFGIDLAILDPQTGEELLGPNVEGVLAVKQPWP-SFTRTIWNNHDRYLDTYLNPYK 533 Query: 530 GYYDTMDAGMVTEFGHIMVMARDDDVLNIAGHRISSGALEEACLENPCVVECAVIGLDDQ 709 GYY D G I ++ R DDV+N++GHR+S+ +E A ++ V ECAV+G D+ Sbjct: 534 GYYFAGDGAARDSQGFIWILGRVDDVVNVSGHRLSTAEVEAAIIQESMVAECAVVGFADE 593 Query: 710 LKGQVPLALLVP------DTDTIKAPEEIVSDTIKIVRDRIGAVA 826 L GQ A +V +T + + +EI I VR IG A Sbjct: 594 LTGQAIAAFVVLKQKSSWNTASERELQEIKKHLILSVRRDIGPFA 638
>sp|Q01574|ACS1_YEAST Acetyl-coenzyme A synthetase 1 (Acetate--CoA ligase 1) (Acyl-activating enzyme 1) Length = 713 Score = 156 bits (395), Expect = 6e-38 Identities = 96/286 (33%), Positives = 145/286 (50%), Gaps = 11/286 (3%) Frame = +2 Query: 2 CTTIIYEGKPVGTPDSSQYFRVLNWHNPVSLFVAPTALRAIRREDPQAI--HGVKYRHPR 175 C T+++EG P P+ S+Y+ +++ H +VAPTALR ++R I H +K Sbjct: 381 CATLVFEGTPA-YPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLK----S 435 Query: 176 FRSLFLAGEHCDVDTLSWAKEIF---KVPVLDHWWQTETGWPITCPAAGLETRADLVPPP 346 R L GE + W E ++P++D +WQTE+G + P AG T P Sbjct: 436 LRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMK----P 491 Query: 347 GSAGRPVPGYDVKVLDTNTGVQLGPNQLGRIVVKLPMPPGMASTLYNNDEMFYKIFFTKF 526 GSA P G D VLD NTG +L + ++ P A T++ N + + + + Sbjct: 492 GSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPY 551 Query: 527 PGYYDTMDAGMVTEFGHIMVMARDDDVLNIAGHRISSGALEEACLENPCVVECAVIGLDD 706 PGYY T D + G+I ++ R DDV+N++GHR+S+ +E A +E+P V ECAV+G +D Sbjct: 552 PGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFND 611 Query: 707 QLKGQVPLALLVP------DTDTIKAPEEIVSDTIKIVRDRIGAVA 826 L GQ A +V T T ++I + VR IG A Sbjct: 612 DLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFA 657
>sp|O60011|ACS1_KLULA Acetyl-coenzyme A synthetase 1 (Acetate--CoA ligase 1) (Acyl-activating enzyme 1) Length = 707 Score = 154 bits (389), Expect = 3e-37 Identities = 88/251 (35%), Positives = 137/251 (54%), Gaps = 4/251 (1%) Frame = +2 Query: 2 CTTIIYEGKPVGTPDSSQYFRVLNWHNPVSLFVAPTALRAIRREDPQAIHGVKYRHPRFR 181 CTT+++EG P P+ S+Y+ +++ + +VAPTALR ++R G + R Sbjct: 375 CTTLVFEGTPA-YPNFSRYWEIVDKYQVTQFYVAPTALRLLKRAGDSFTEGFSLKS--LR 431 Query: 182 SLFLAGEHCDVDTLSWAKEIF---KVPVLDHWWQTETGWPITCPAAGLETRADLVPPPGS 352 SL GE + W E ++P++D +WQTE+G + P AG T PG+ Sbjct: 432 SLGSVGEPIAAEVWEWYSEKIGKNELPIVDTYWQTESGSHLVTPLAGGATPMK----PGA 487 Query: 353 AGRPVPGYDVKVLDTNTGV-QLGPNQLGRIVVKLPMPPGMASTLYNNDEMFYKIFFTKFP 529 A P G D+ VLD TG+ Q G + G + +K P P A T++ N++ F + +P Sbjct: 488 AAFPFFGIDLAVLDPTTGIEQTGEHAEGVLAIKRPWP-SFARTIWKNNDRFLDTYLKPYP 546 Query: 530 GYYDTMDAGMVTEFGHIMVMARDDDVLNIAGHRISSGALEEACLENPCVVECAVIGLDDQ 709 GYY T D + G ++ R DDV+N++GHR+S+ +E A +E+ V ECAV+G +D+ Sbjct: 547 GYYFTGDGVARDKDGFFWILGRVDDVVNVSGHRLSTAEIEAAIIEDDMVAECAVVGFNDE 606 Query: 710 LKGQVPLALLV 742 L GQ A +V Sbjct: 607 LTGQAVAAFVV 617
>sp|Q6FLU2|ACS1_CANGA Acetyl-coenzyme A synthetase 1 (Acetate--CoA ligase 1) (Acyl-activating enzyme 1) Length = 704 Score = 152 bits (384), Expect = 1e-36 Identities = 97/285 (34%), Positives = 147/285 (51%), Gaps = 10/285 (3%) Frame = +2 Query: 2 CTTIIYEGKPVGTPDSSQYFRVLNWHNPVSLFVAPTALRAIRREDPQAIHGVKYRHPRFR 181 CTT+++EG P P+ S+Y+ +++ H +VAPTALR ++R I G + R Sbjct: 372 CTTLVFEGTPA-YPNFSRYWEIIDKHQVTQFYVAPTALRLLKRAGDSFIDGFSLKS--LR 428 Query: 182 SLFLAGEHCDVDTLSWAKEIF---KVPVLDHWWQTETGWPITCPAAGLETRADLVPPPGS 352 L GE + W + ++P++D +WQTE+G + P AG T PGS Sbjct: 429 CLGSVGEPIAAEVWEWYSDKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMK----PGS 484 Query: 353 AGRPVPGYDVKVLDTNTGVQLGPNQL-GRIVVKLPMPPGMASTLYNNDEMFYKIFFTKFP 529 A P G + +LD TG ++ + G + +K P P A T++ N + F + + Sbjct: 485 ASLPFFGIETVILDPTTGEEINDSHAEGVLAIKRPWP-SFARTIWKNHDRFLDTYLNPYK 543 Query: 530 GYYDTMDAGMVTEFGHIMVMARDDDVLNIAGHRISSGALEEACLENPCVVECAVIGLDDQ 709 GYY T D + G+I ++ R DDV+N++GHR+S+ +E A +E+ V ECAV+G +D Sbjct: 544 GYYFTGDGAARDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDRMVAECAVVGFNDD 603 Query: 710 LKGQVPLALLV-PDTDT-IKAPEEIVSD----TIKIVRDRIGAVA 826 L GQ A +V D T A EE + D I VR IG A Sbjct: 604 LTGQAVAAFVVLKDKSTWASASEEELQDIKKHLILTVRKDIGPFA 648
>sp|Q8NJN3|ACS2_CANAL Acetyl-coenzyme A synthetase 2 (Acetate--CoA ligase 2) (Acyl-activating enzyme 2) Length = 581 Score = 143 bits (360), Expect = 7e-34 Identities = 87/248 (35%), Positives = 127/248 (51%), Gaps = 4/248 (1%) Frame = +2 Query: 8 TIIYEGKPVGTPDSSQYFRVLNWHNPVSLFVAPTALRAIRREDPQAIHGVKYRHPRFRSL 187 TII+EG P PD ++++++ H +VAPTALR +R+ Q I VKY R+L Sbjct: 342 TIIFEGTPA-YPDYGRFWQIVEKHKATHFYVAPTALRLLRKAGEQEI--VKYDLSSLRTL 398 Query: 188 FLAGEHCDVDTLSWAKEIF---KVPVLDHWWQTETGWPITCPAAGLETRADLVP-PPGSA 355 GE D W E + + D +WQTE+G + P AG+ VP PGSA Sbjct: 399 GSVGEPISPDIWEWYNEFVGKNQCHISDTYWQTESGSHLIAPLAGV------VPNKPGSA 452 Query: 356 GRPVPGYDVKVLDTNTGVQLGPNQLGRIVVKLPMPPGMASTLYNNDEMFYKIFFTKFPGY 535 P G D ++D TGV++ N ++ P MA T+Y N + + +PGY Sbjct: 453 SYPFFGIDAALIDPVTGVEIEGNDAEGVLAIKDHWPSMARTVYKNHTKYMDTYMNPYPGY 512 Query: 536 YDTMDAGMVTEFGHIMVMARDDDVLNIAGHRISSGALEEACLENPCVVECAVIGLDDQLK 715 Y T D G+ + R DDV+N++GHR+S+ +E A +E+ V E AV+G+ D + Sbjct: 513 YFTGDGAARDHDGYYWIRGRVDDVVNVSGHRLSTAEIEAALIEDKKVSEAAVVGIHDDIT 572 Query: 716 GQVPLALL 739 GQ L L Sbjct: 573 GQAALLTL 580
>sp|Q8KBY0|ACSA_CHLTE Acetyl-coenzyme A synthetase (Acetate--CoA ligase) (Acyl-activating enzyme) Length = 659 Score = 141 bits (356), Expect = 2e-33 Identities = 91/277 (32%), Positives = 140/277 (50%), Gaps = 3/277 (1%) Frame = +2 Query: 5 TTIIYEGKPVGTPDSSQYFRVLNWHNPVSLFVAPTALRAIRREDPQAIHGVKYRHPRFRS 184 T +YEG P P +++ ++N H L+ APTA+RA R + + K+ R Sbjct: 338 TVFMYEGAP-NYPQWDRFWDIINRHKITILYTAPTAIRAFIRAGNEWV--TKHDLSSLRL 394 Query: 185 LFLAGEHCDVDTLSWAKEIF---KVPVLDHWWQTETGWPITCPAAGLETRADLVPPPGSA 355 L GE + + W + K P++D WWQTETG + P G PG+A Sbjct: 395 LGTVGEPINPEAWMWYHKYVGQEKCPIVDTWWQTETGGIMISPMPGATPTK-----PGTA 449 Query: 356 GRPVPGYDVKVLDTNTGVQLGPNQLGRIVVKLPMPPGMASTLYNNDEMFYKIFFTKFPGY 535 RP+PG V V+ + G N+ G +VVK P P M T+Y ++E + K ++++FPG Sbjct: 450 TRPLPGIMVDVVRKD-GTPCNANEGGYLVVKRPWP-SMLRTIYGDNERYEKTYWSEFPGM 507 Query: 536 YDTMDAGMVTEFGHIMVMARDDDVLNIAGHRISSGALEEACLENPCVVECAVIGLDDQLK 715 Y T D + G+I +M R DDV+N++GHR+ + +E A + + V E AV+ D++K Sbjct: 508 YFTGDGARKDDDGYIWIMGRVDDVVNVSGHRLGTSEVESALVSHEAVAEAAVVSRPDEIK 567 Query: 716 GQVPLALLVPDTDTIKAPEEIVSDTIKIVRDRIGAVA 826 G L V D + ++ K V IGA+A Sbjct: 568 GNA-LVAFVTLKDGYEGDAKLRDSLGKHVAKEIGAIA 603
>sp|Q6BS00|ACS2_DEBHA Acetyl-coenzyme A synthetase 2 (Acetate--CoA ligase 2) (Acyl-activating enzyme 2) Length = 679 Score = 139 bits (349), Expect = 1e-32 Identities = 90/290 (31%), Positives = 144/290 (49%), Gaps = 13/290 (4%) Frame = +2 Query: 8 TIIYEGKPVGTPDSSQYFRVLNWHNPVSLFVAPTALRAIRREDPQAIHGVKYRHPRFRSL 187 T+++EG P PD + ++++ H +VAPTALR +R+ Q I KY R+L Sbjct: 342 TVVFEGTPA-FPDYGRLWQIVEKHKATHFYVAPTALRLLRKSGEQEIE--KYDLSSLRTL 398 Query: 188 FLAGEHCDVDTLSWAKEIF---KVPVLDHWWQTETGWPITCPAAGLETRADLVP-PPGSA 355 GE D W E + V D +WQTE+G P AG+ VP PGSA Sbjct: 399 GSVGEPISPDIWEWYNEKVGKGQCHVTDTYWQTESGSHFIAPIAGV------VPNKPGSA 452 Query: 356 GRPVPGYDVKVLDTNTGVQLGPNQLGRIVVKLPMPPGMASTLYNNDEMFYKIFFTKFPGY 535 P G ++D +G+++ N + ++ P MA ++Y N + + +PGY Sbjct: 453 AVPFFGIQTCLIDPVSGIEIQGNDVEGVLAVKDTWPSMARSVYKNHTKYMDTYLNPYPGY 512 Query: 536 YDTMDAGMVTEFGHIMVMARDDDVLNIAGHRISSGALEEACLENPCVVECAVIGLDDQLK 715 Y T D G+ + R DDV+N++GHR+S+ +E A +E+ + E AV+G++D L Sbjct: 513 YFTGDGAARDHDGYYWIRGRVDDVVNVSGHRLSTAEIEAALIEHNAISEAAVVGMNDDLT 572 Query: 716 GQVPLAL------LVPDTDTIKAPEE---IVSDTIKIVRDRIGAVAGMRN 838 GQ +A L+ + ++PEE + + I VR +IG A ++ Sbjct: 573 GQTVVAFVALKEHLIANLKADESPEEALKLKKEMILQVRTQIGPFAAPKS 622
Database: Non-redundant SwissProt sequences Posted date: Dec 6, 2005 7:40 AM Number of letters in database: 68,354,980 Number of sequences in database: 184,735 Database: swissprot.01 Posted date: Dec 6, 2005 8:18 AM Number of letters in database: 66,202,850 Number of sequences in database: 184,431 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 106,963,475 Number of Sequences: 369166 Number of extensions: 2431249 Number of successful extensions: 6961 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 6412 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6795 length of database: 68,354,980 effective HSP length: 109 effective length of database: 48,218,865 effective search space used: 8197207050 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)