Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_P20
(872 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q5ZKX1|CHM1B_CHICK Charged multivesicular body protein 1... 249 9e-66
sp|Q7SZB5|CHM1B_XENLA Charged multivesicular body protein 1... 247 3e-65
sp|Q6DF27|CHM1B_XENTR Charged multivesicular body protein 1... 246 5e-65
sp|Q7LBR1|CHM1B_HUMAN Charged multivesicular body protein 1... 244 2e-64
sp|Q9CQD4|CH1B2_MOUSE Charged multivesicular body protein 1... 244 2e-64
sp|Q99LU0|CH1B1_MOUSE Charged multivesicular body protein 1... 243 7e-64
sp|Q5E994|CHM1B_BOVIN Charged multivesicular body protein 1... 241 2e-63
sp|Q7ZVB1|CHM1B_BRARE Charged multivesicular body protein 1... 240 3e-63
sp|Q6PHF0|CHM1A_BRARE Charged multivesicular body protein 1... 178 2e-44
sp|Q921W0|CHM1A_MOUSE Charged multivesicular body protein 1... 174 3e-43
>sp|Q5ZKX1|CHM1B_CHICK Charged multivesicular body protein 1b (Chromatin modifying protein
1b) (CHMP1b)
Length = 199
Score = 249 bits (635), Expect = 9e-66
Identities = 131/195 (67%), Positives = 158/195 (81%)
Frame = +3
Query: 15 MDKHLFNLKFAAKDLERNAXXXXXXXXXXXXXXXLAIQKGNMEGAQIHAENAIRQKNQAL 194
M+KHLFNLKFAAK+L RN+ AIQKGNME A+IHAENAIRQKNQA+
Sbjct: 4 MEKHLFNLKFAAKELNRNSKRCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAI 63
Query: 195 NYRRMSSRIDAVAARVQTAVTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFE 374
N+ RMS+R+DAVAARVQTAVTM VT SMAGVVKSM++ +KSMNLEK+S LMD+FE FE
Sbjct: 64 NFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKSMNLEKISALMDKFEHQFE 123
Query: 375 NLDVQSQVMESTMCNTTTLTTPQNQVESLMHEVADEAGIELNMQLPAGQSTAVGGASSQA 554
LDVQ+Q ME+TM NTTTLTTPQNQV+ L+ E+ADEAG++LNM+LP GQ+ +VG +S A
Sbjct: 124 TLDVQTQQMENTMSNTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQGQTGSVG--TSVA 181
Query: 555 AQEQDELTQRLAKLR 599
+ EQDEL+QRLA+LR
Sbjct: 182 SAEQDELSQRLARLR 196
>sp|Q7SZB5|CHM1B_XENLA Charged multivesicular body protein 1b (Chromatin modifying protein
1b) (CHMP1b)
Length = 199
Score = 247 bits (631), Expect = 3e-65
Identities = 130/195 (66%), Positives = 157/195 (80%)
Frame = +3
Query: 15 MDKHLFNLKFAAKDLERNAXXXXXXXXXXXXXXXLAIQKGNMEGAQIHAENAIRQKNQAL 194
M+KHLFNLKFAAK+L RNA AIQKGN E A+IHAENAIRQKNQ +
Sbjct: 4 MEKHLFNLKFAAKELNRNAKKCEKEEKTEKAKIKKAIQKGNTEIARIHAENAIRQKNQGI 63
Query: 195 NYRRMSSRIDAVAARVQTAVTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFE 374
N+ RMS+R+DAVAARVQTAVTM VT SMAGVVKSM++ +KSMNLEK+S LMD+FE FE
Sbjct: 64 NFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKSMNLEKISALMDKFEHQFE 123
Query: 375 NLDVQSQVMESTMCNTTTLTTPQNQVESLMHEVADEAGIELNMQLPAGQSTAVGGASSQA 554
LDVQ+Q ME TM NTTTLTTPQNQV++L+HE+ADEAG++L+M+LP GQ+ +VG +S A
Sbjct: 124 TLDVQTQQMEDTMSNTTTLTTPQNQVDNLLHEMADEAGLDLSMELPQGQTGSVG--TSVA 181
Query: 555 AQEQDELTQRLAKLR 599
+ EQDEL+QRLA+LR
Sbjct: 182 STEQDELSQRLARLR 196
>sp|Q6DF27|CHM1B_XENTR Charged multivesicular body protein 1b (Chromatin modifying protein
1b) (CHMP1b)
Length = 199
Score = 246 bits (629), Expect = 5e-65
Identities = 130/195 (66%), Positives = 157/195 (80%)
Frame = +3
Query: 15 MDKHLFNLKFAAKDLERNAXXXXXXXXXXXXXXXLAIQKGNMEGAQIHAENAIRQKNQAL 194
M+K+LFNLKFAAK+L RNA AIQKGN E A+IHAENAIRQKNQ +
Sbjct: 4 MEKNLFNLKFAAKELHRNAKKCEKEEKTEKAKIKKAIQKGNTEIARIHAENAIRQKNQGI 63
Query: 195 NYRRMSSRIDAVAARVQTAVTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFE 374
N+ RMS+R+DAVAARVQTAVTM VT SMAGVVKSM++ +KSMNLEK+S LMD+FE FE
Sbjct: 64 NFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDTTLKSMNLEKISALMDKFEHQFE 123
Query: 375 NLDVQSQVMESTMCNTTTLTTPQNQVESLMHEVADEAGIELNMQLPAGQSTAVGGASSQA 554
LDVQ+Q ME TM NTTTLTTPQNQV++L+HE+ADEAG++LNM+LP GQ+ +VG +S A
Sbjct: 124 TLDVQTQQMEDTMSNTTTLTTPQNQVDNLLHEMADEAGLDLNMELPQGQTGSVG--TSVA 181
Query: 555 AQEQDELTQRLAKLR 599
+ EQDEL+QRLA+LR
Sbjct: 182 STEQDELSQRLARLR 196
>sp|Q7LBR1|CHM1B_HUMAN Charged multivesicular body protein 1b (Chromatin modifying protein
1b) (CHMP1b) (CHMP1.5) (Vacuolar protein sorting 46-2)
(Vps46-2) (hVps46-2)
Length = 199
Score = 244 bits (623), Expect = 2e-64
Identities = 129/195 (66%), Positives = 157/195 (80%)
Frame = +3
Query: 15 MDKHLFNLKFAAKDLERNAXXXXXXXXXXXXXXXLAIQKGNMEGAQIHAENAIRQKNQAL 194
M+KHLFNLKFAAK+L R+A AIQKGNME A+IHAENAIRQKNQA+
Sbjct: 4 MEKHLFNLKFAAKELSRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAV 63
Query: 195 NYRRMSSRIDAVAARVQTAVTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFE 374
N+ RMS+R+DAVAARVQTAVTM VT SMAGVVKSM++ +K+MNLEK+S LMD+FE FE
Sbjct: 64 NFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKTMNLEKISALMDKFEHQFE 123
Query: 375 NLDVQSQVMESTMCNTTTLTTPQNQVESLMHEVADEAGIELNMQLPAGQSTAVGGASSQA 554
LDVQ+Q ME TM +TTTLTTPQNQV+ L+ E+ADEAG++LNM+LP GQ+ +VG +S A
Sbjct: 124 TLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQGQTGSVG--TSVA 181
Query: 555 AQEQDELTQRLAKLR 599
+ EQDEL+QRLA+LR
Sbjct: 182 SAEQDELSQRLARLR 196
>sp|Q9CQD4|CH1B2_MOUSE Charged multivesicular body protein 1b-2 (Chromatin modifying
protein 1b-2) (CHMP1b-2)
Length = 199
Score = 244 bits (623), Expect = 2e-64
Identities = 129/195 (66%), Positives = 156/195 (80%)
Frame = +3
Query: 15 MDKHLFNLKFAAKDLERNAXXXXXXXXXXXXXXXLAIQKGNMEGAQIHAENAIRQKNQAL 194
M+KHLFNLKFAAK+L RNA AIQKGN E A+IHAENAIRQKNQA+
Sbjct: 4 MEKHLFNLKFAAKELNRNAKKCDKEEKAEKAKIKKAIQKGNTEVARIHAENAIRQKNQAI 63
Query: 195 NYRRMSSRIDAVAARVQTAVTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFE 374
N+ RMS+R+DAVAARVQTAVTM VT SMAGVVKSM++ ++SMNLEK+S LMD+FE FE
Sbjct: 64 NFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLRSMNLEKISALMDKFEHQFE 123
Query: 375 NLDVQSQVMESTMCNTTTLTTPQNQVESLMHEVADEAGIELNMQLPAGQSTAVGGASSQA 554
LDVQ+Q ME TM +TTTLTTPQNQV+ L+ E+ADEAG++LNM+LP GQ+ +VG +S A
Sbjct: 124 TLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQGQTGSVG--ASVA 181
Query: 555 AQEQDELTQRLAKLR 599
+ EQDEL+QRLA+LR
Sbjct: 182 STEQDELSQRLARLR 196
>sp|Q99LU0|CH1B1_MOUSE Charged multivesicular body protein 1b-1 (Chromatin modifying
protein 1b-1) (CHMP1b-1)
Length = 199
Score = 243 bits (619), Expect = 7e-64
Identities = 128/195 (65%), Positives = 156/195 (80%)
Frame = +3
Query: 15 MDKHLFNLKFAAKDLERNAXXXXXXXXXXXXXXXLAIQKGNMEGAQIHAENAIRQKNQAL 194
M+KHLFNLKFAAK+L R++ AIQKGNME A+IHAENAIRQKNQ +
Sbjct: 4 MEKHLFNLKFAAKELNRSSKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQGV 63
Query: 195 NYRRMSSRIDAVAARVQTAVTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFE 374
N+ RMS+R+DAVAARVQTAVTM VT SMAGVVKSM++ +KSMNLEK+S LMD+FE FE
Sbjct: 64 NFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKSMNLEKISALMDKFEHQFE 123
Query: 375 NLDVQSQVMESTMCNTTTLTTPQNQVESLMHEVADEAGIELNMQLPAGQSTAVGGASSQA 554
LDVQ+Q ME TM +TTTLTTPQNQV+ L+ E+ADEAG++LNM+LP GQ+ +VG +S A
Sbjct: 124 TLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQGQTGSVG--TSVA 181
Query: 555 AQEQDELTQRLAKLR 599
+ EQDEL+QRLA+LR
Sbjct: 182 SAEQDELSQRLARLR 196
>sp|Q5E994|CHM1B_BOVIN Charged multivesicular body protein 1b (Chromatin modifying protein
1b) (CHMP1b)
Length = 199
Score = 241 bits (615), Expect = 2e-63
Identities = 128/195 (65%), Positives = 156/195 (80%)
Frame = +3
Query: 15 MDKHLFNLKFAAKDLERNAXXXXXXXXXXXXXXXLAIQKGNMEGAQIHAENAIRQKNQAL 194
M+KHLFNLKFAAK+L R+A AIQKGNME A+IHAENAIRQKNQA+
Sbjct: 4 MEKHLFNLKFAAKELGRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAV 63
Query: 195 NYRRMSSRIDAVAARVQTAVTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFE 374
N+ RMS+R+DAVAARVQTAVTM VT SMAGVVKSM++ +K+MNLEK+S LMD+FE FE
Sbjct: 64 NFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKTMNLEKISALMDKFEHQFE 123
Query: 375 NLDVQSQVMESTMCNTTTLTTPQNQVESLMHEVADEAGIELNMQLPAGQSTAVGGASSQA 554
LDVQ+Q ME TM +TTTLTTPQ QV+ L+ E+ADEAG++LNM+LP GQ+ +VG +S A
Sbjct: 124 TLDVQTQQMEDTMSSTTTLTTPQGQVDMLLQEMADEAGLDLNMELPQGQTGSVG--TSVA 181
Query: 555 AQEQDELTQRLAKLR 599
+ EQDEL+QRLA+LR
Sbjct: 182 SAEQDELSQRLARLR 196
>sp|Q7ZVB1|CHM1B_BRARE Charged multivesicular body protein 1b (Chromatin modifying protein
1b) (CHMP1b)
Length = 199
Score = 240 bits (613), Expect = 3e-63
Identities = 126/195 (64%), Positives = 157/195 (80%)
Frame = +3
Query: 15 MDKHLFNLKFAAKDLERNAXXXXXXXXXXXXXXXLAIQKGNMEGAQIHAENAIRQKNQAL 194
M+KHLFNLKFAAK+L+RN+ AIQKGNME A+IHAENAIRQKNQ++
Sbjct: 4 MEKHLFNLKFAAKELQRNSKKCDKEEKAEKVKVKKAIQKGNMEVARIHAENAIRQKNQSV 63
Query: 195 NYRRMSSRIDAVAARVQTAVTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFE 374
N+ RMS+R+DAVAARVQTAVTM VT SMAGVVK M++ +KSMNLEK+S LM++FE+ FE
Sbjct: 64 NFLRMSARVDAVAARVQTAVTMNQVTKSMAGVVKGMDATLKSMNLEKISGLMEKFERQFE 123
Query: 375 NLDVQSQVMESTMCNTTTLTTPQNQVESLMHEVADEAGIELNMQLPAGQSTAVGGASSQA 554
LDVQ+ ME +M +TTTLTTPQ QV++LM E+ADEAG++LNM+LP GQ+ +VG +S A
Sbjct: 124 TLDVQTAQMEDSMSSTTTLTTPQGQVDTLMMEMADEAGLDLNMELPQGQTGSVG--TSVA 181
Query: 555 AQEQDELTQRLAKLR 599
+ EQDEL+QRLAKLR
Sbjct: 182 SAEQDELSQRLAKLR 196
>sp|Q6PHF0|CHM1A_BRARE Charged multivesicular body protein 1a (Chromatin modifying protein
1a) (CHMP1a)
Length = 198
Score = 178 bits (452), Expect = 2e-44
Identities = 95/198 (47%), Positives = 141/198 (71%), Gaps = 3/198 (1%)
Frame = +3
Query: 15 MDKHLFNLKFAAKDLERNAXXXXXXXXXXXXXXXLAIQKGNMEGAQIHAENAIRQKNQAL 194
MD LF LKF +K LER A A+Q+ N+E A+++AENAIR+KN+ L
Sbjct: 1 MDDTLFQLKFTSKQLERLAKKAEKDSKSEQAKVKKALQQKNVECARVYAENAIRKKNEGL 60
Query: 195 NYRRMSSRIDAVAARVQTAVTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFE 374
N+ RM+SR+DAVA++VQTA+TMK V +M V K+++ A+ SM+L+KVS +MD+FE +
Sbjct: 61 NWLRMASRVDAVASKVQTALTMKGVAKNMTQVTKALDKALSSMDLQKVSAVMDKFETQVQ 120
Query: 375 NLDVQSQVMESTMCNTTTLTTPQNQVESLMHEVADEAGIELN---MQLPAGQSTAVGGAS 545
NLDV + VME +M + TTL+TPQ QV+ L+ ++A+E+G+E+ QLPAG S A+G S
Sbjct: 121 NLDVHTSVMEDSMSSATTLSTPQQQVDDLILQIAEESGLEVEDQLSQLPAGAS-ALGETS 179
Query: 546 SQAAQEQDELTQRLAKLR 599
++A +++D+L++RLA LR
Sbjct: 180 ARAQEKEDQLSRRLAALR 197
>sp|Q921W0|CHM1A_MOUSE Charged multivesicular body protein 1a (Chromatin modifying protein
1a) (CHMP1a)
Length = 196
Score = 174 bits (441), Expect = 3e-43
Identities = 97/198 (48%), Positives = 139/198 (70%), Gaps = 3/198 (1%)
Frame = +3
Query: 15 MDKHLFNLKFAAKDLERNAXXXXXXXXXXXXXXXLAIQKGNMEGAQIHAENAIRQKNQAL 194
MD LF LKF AK LE+ A A+Q+ N+E A+++AENAIR+KN+ +
Sbjct: 1 MDDTLFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKALQQKNVECARVYAENAIRKKNEGV 60
Query: 195 NYRRMSSRIDAVAARVQTAVTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFE 374
N+ RM+SR+DAVA++VQTAVTMK VT +MA V K+++ A+ +M+L+KVS +MDRFE+ +
Sbjct: 61 NWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSAMDLQKVSAVMDRFEQQVQ 120
Query: 375 NLDVQSQVMESTMCNTTTLTTPQNQVESLMHEVADEAGIEL---NMQLPAGQSTAVGGAS 545
NLDV + VME ++ + TTLTTPQ QV+SL+ ++A+E G+E+ QLP G S AVG
Sbjct: 121 NLDVHTSVMEDSVSSATTLTTPQEQVDSLIVQIAEENGLEVLDQLSQLPEGAS-AVG--E 177
Query: 546 SQAAQEQDELTQRLAKLR 599
S ++D+L++RLA LR
Sbjct: 178 SSVRSQEDQLSRRLAALR 195
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,019,552
Number of Sequences: 369166
Number of extensions: 1205439
Number of successful extensions: 3271
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3241
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8646143400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)