Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_P13
(182 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P31977|EZRI_RAT Ezrin (p81) (Cytovillin) (Villin-2) 29 3.8
sp|P54697|MYOJ_DICDI Myosin IJ heavy chain 28 5.0
sp|P46020|KPB1_HUMAN Phosphorylase b kinase alpha regulator... 28 6.5
sp|Q9BRK4|LZTS2_HUMAN Leucine zipper putative tumor suppres... 28 8.4
sp|P26040|EZRI_MOUSE Ezrin (p81) (Cytovillin) (Villin-2) 28 8.4
sp|P42377|YDNK_LACLC Hypothetical 70.0 kDa protein in dnaK ... 28 8.4
sp|Q9V677|ECM29_DROME Proteasome-associated protein ECM29 h... 28 8.4
>sp|P31977|EZRI_RAT Ezrin (p81) (Cytovillin) (Villin-2)
Length = 586
Score = 28.9 bits (63), Expect = 3.8
Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = +3
Query: 3 LEEFQQNIERTEKDMVVQLENEIK-DIEYKRNNFEAQRLAWEESNRDLNFRA 155
L++F+Q +R EK++ Q+E ++ + E +R EA+RL E++R RA
Sbjct: 351 LQDFEQKTKRAEKELSEQIEKALQLEEERRRAQEEAERL---EADRMAALRA 399
>sp|P54697|MYOJ_DICDI Myosin IJ heavy chain
Length = 2245
Score = 28.5 bits (62), Expect = 5.0
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Frame = +3
Query: 6 EEFQQNIERTE------KDMVVQLENEIKDIEYKRNNFEAQRLAWEESN 134
E QQ++++ E KD + +LENE+K + + FE + +E N
Sbjct: 1410 ERVQQSLKQQERDCQQYKDTINRLENEVKQLTQLKERFENEFFVAKEQN 1458
>sp|P46020|KPB1_HUMAN Phosphorylase b kinase alpha regulatory chain, skeletal muscle
isoform (Phosphorylase kinase alpha M subunit)
Length = 1223
Score = 28.1 bits (61), Expect = 6.5
Identities = 10/27 (37%), Positives = 21/27 (77%)
Frame = +3
Query: 30 RTEKDMVVQLENEIKDIEYKRNNFEAQ 110
+TE+ ++QL++EIK +E++R + A+
Sbjct: 996 KTERTGIMQLKSEIKQVEFRRLSISAE 1022
>sp|Q9BRK4|LZTS2_HUMAN Leucine zipper putative tumor suppressor 2 (Protein LAPSER1)
Length = 669
Score = 27.7 bits (60), Expect = 8.4
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +3
Query: 51 VQLENEIKDIEYKRNNFEAQRLAWE 125
V+L+ E + E +R++FE +RLAW+
Sbjct: 580 VELQRERRRGEEQRDSFEGERLAWQ 604
>sp|P26040|EZRI_MOUSE Ezrin (p81) (Cytovillin) (Villin-2)
Length = 586
Score = 27.7 bits (60), Expect = 8.4
Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = +3
Query: 3 LEEFQQNIERTEKDMVVQLENEIK-DIEYKRNNFEAQRLAWEESNRDLNFRA 155
L++++Q +R EK++ Q+E ++ + E +R EA+RL E++R RA
Sbjct: 351 LQDYEQKTKRAEKELSEQIEKALQLEEERRRAQEEAERL---EADRMAALRA 399
>sp|P42377|YDNK_LACLC Hypothetical 70.0 kDa protein in dnaK 3'region (ORF4)
Length = 614
Score = 27.7 bits (60), Expect = 8.4
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = -2
Query: 145 FKSRLLSSQANLCASKLFRLYSISLISFSNCTTIS 41
F S LL N SKLF L +++L +FSN T I+
Sbjct: 126 FSSFLLKDHTN---SKLFGLLAVALFTFSNSTYIN 157
>sp|Q9V677|ECM29_DROME Proteasome-associated protein ECM29 homolog
Length = 1890
Score = 27.7 bits (60), Expect = 8.4
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 6 EEFQQNIERTEKDMVVQLENEIKDIEYKRNNFEAQ 110
+ F+ N+E+ ++D ++ IKDIE K + Q
Sbjct: 1855 QSFESNLEKFQRDSAPEIRCRIKDIEDKLSKLNPQ 1889
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,548,026
Number of Sequences: 369166
Number of extensions: 275372
Number of successful extensions: 1144
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1144
length of database: 68,354,980
effective HSP length: 33
effective length of database: 62,258,725
effective search space used: 1680985575
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)