Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_P12-2
(211 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P16869|FHUE_ECOLI FhuE receptor precursor (Outer-membran... 29 3.8
sp|Q28478|ADAM2_MACFA ADAM 2 precursor (A disintegrin and m... 28 8.6
sp|Q8T116|HCYX_SCUCO Hemocyanin subunit X precursor 28 8.6
>sp|P16869|FHUE_ECOLI FhuE receptor precursor (Outer-membrane receptor for
Fe(III)-coprogen, Fe(III)-ferrioxamine B and
Fe(III)-rhodotrulic acid)
Length = 729
Score = 28.9 bits (63), Expect = 3.8
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 103 SNSYDRLRASKPMTTYADSAVNALMM 180
SNSYDR R++ P Y D +N + M
Sbjct: 287 SNSYDRARSTAPDWAYNDKEINKVFM 312
>sp|Q28478|ADAM2_MACFA ADAM 2 precursor (A disintegrin and metalloproteinase domain 2)
(Fertilin beta subunit) (PH-30) (PH30) (PH30-beta)
Length = 735
Score = 27.7 bits (60), Expect = 8.6
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -2
Query: 201 HQRCIIRHHESIDCTVSICRHRFGCS 124
+QRC+ + DCT C HR C+
Sbjct: 603 NQRCVSSSYLGYDCTTDKCNHRGVCN 628
>sp|Q8T116|HCYX_SCUCO Hemocyanin subunit X precursor
Length = 685
Score = 27.7 bits (60), Expect = 8.6
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -2
Query: 156 VSICRHRFGCSKSII*VTIRTKMTRINSFFSRSVKWYHHIIS 31
V ICR RF +I+ I + + IN F ++ Y H+I+
Sbjct: 333 VKICRTRFYGGLNILGNLIESNLRSINRMFYGNIHCYAHVIA 374
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,589,582
Number of Sequences: 369166
Number of extensions: 356550
Number of successful extensions: 990
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 68,354,980
effective HSP length: 41
effective length of database: 60,780,845
effective search space used: 1701863660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)