Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_P12-1
(297 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9LZ57|RL36C_ARATH 60S ribosomal protein L36-3 105 2e-23
sp|O80929|RL36A_ARATH 60S ribosomal protein L36-1 102 2e-22
sp|Q9M352|RL36B_ARATH 60S ribosomal protein L36-2 102 3e-22
sp|Q9Y3U8|RL36_HUMAN 60S ribosomal protein L36 97 9e-21
sp|P39032|RL36_RAT 60S ribosomal protein L36 95 4e-20
sp|P49181|RL36_CAEEL 60S ribosomal protein L36 95 4e-20
sp|P49630|RL36_DROME 60S ribosomal protein L36 (Minute(1)1B... 92 5e-19
sp|P47964|RL36_MOUSE 60S ribosomal protein L36 90 2e-18
sp|Q9LRB8|RL36_ENTCP 60S ribosomal protein L36 88 5e-18
sp|Q9HFR7|RL36_TRIHM 60S ribosomal protein L36 (TRP36) 81 8e-16
>sp|Q9LZ57|RL36C_ARATH 60S ribosomal protein L36-3
Length = 108
Score = 105 bits (263), Expect = 2e-23
Identities = 53/86 (61%), Positives = 64/86 (74%)
Frame = +3
Query: 3 KGHVVTKLPKRVKPSHSKGKQSSSAKFCRDLVKEMVGLAPYEKRIIELLKIQKDKRALKF 182
KGHVVTK + +P++ KGK S F R+L+KE+ G APYEKRI ELLK+ KDKRALK
Sbjct: 12 KGHVVTKREQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRALKV 71
Query: 183 AKRRIGGHSRAKRVRENMSKVVRNMR 260
AKR++G H RAKR RE MS V+R MR
Sbjct: 72 AKRKLGTHKRAKRKREEMSSVLRKMR 97
>sp|O80929|RL36A_ARATH 60S ribosomal protein L36-1
Length = 113
Score = 102 bits (255), Expect = 2e-22
Identities = 51/86 (59%), Positives = 62/86 (72%)
Frame = +3
Query: 3 KGHVVTKLPKRVKPSHSKGKQSSSAKFCRDLVKEMVGLAPYEKRIIELLKIQKDKRALKF 182
KGHVVT+ +P+ KGK S F R L++E+ G+APYEKRI ELLK+ KDKRALK
Sbjct: 16 KGHVVTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVGKDKRALKV 75
Query: 183 AKRRIGGHSRAKRVRENMSKVVRNMR 260
AKR++G H RAKR RE MS V+R MR
Sbjct: 76 AKRKLGTHKRAKRKREEMSSVLRKMR 101
>sp|Q9M352|RL36B_ARATH 60S ribosomal protein L36-2
Length = 112
Score = 102 bits (254), Expect = 3e-22
Identities = 52/86 (60%), Positives = 61/86 (70%)
Frame = +3
Query: 3 KGHVVTKLPKRVKPSHSKGKQSSSAKFCRDLVKEMVGLAPYEKRIIELLKIQKDKRALKF 182
KGHVVT+ +P KGK S F R+L+KE+ G APYEKRI ELLK+ KDKRALK
Sbjct: 16 KGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRALKV 75
Query: 183 AKRRIGGHSRAKRVRENMSKVVRNMR 260
AKR++G H RAKR RE MS V+R MR
Sbjct: 76 AKRKLGTHKRAKRKREEMSSVLRKMR 101
>sp|Q9Y3U8|RL36_HUMAN 60S ribosomal protein L36
Length = 105
Score = 97.4 bits (241), Expect = 9e-21
Identities = 46/87 (52%), Positives = 62/87 (71%)
Frame = +3
Query: 3 KGHVVTKLPKRVKPSHSKGKQSSSAKFCRDLVKEMVGLAPYEKRIIELLKIQKDKRALKF 182
KGH VTK + + S +G+ + KF RD+++E+ G APYE+R +ELLK+ KDKRALKF
Sbjct: 13 KGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKF 72
Query: 183 AKRRIGGHSRAKRVRENMSKVVRNMRK 263
K+R+G H RAKR RE +S V+ MRK
Sbjct: 73 IKKRVGTHIRAKRKREELSNVLAAMRK 99
>sp|P39032|RL36_RAT 60S ribosomal protein L36
Length = 105
Score = 95.1 bits (235), Expect = 4e-20
Identities = 45/87 (51%), Positives = 61/87 (70%)
Frame = +3
Query: 3 KGHVVTKLPKRVKPSHSKGKQSSSAKFCRDLVKEMVGLAPYEKRIIELLKIQKDKRALKF 182
KGH VTK + + S +G+ + KF RD+++E+ APYE+R +ELLK+ KDKRALKF
Sbjct: 13 KGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCAFAPYERRAMELLKVSKDKRALKF 72
Query: 183 AKRRIGGHSRAKRVRENMSKVVRNMRK 263
K+R+G H RAKR RE +S V+ MRK
Sbjct: 73 IKKRVGTHIRAKRKREELSNVLAAMRK 99
>sp|P49181|RL36_CAEEL 60S ribosomal protein L36
Length = 104
Score = 95.1 bits (235), Expect = 4e-20
Identities = 45/87 (51%), Positives = 59/87 (67%)
Frame = +3
Query: 3 KGHVVTKLPKRVKPSHSKGKQSSSAKFCRDLVKEMVGLAPYEKRIIELLKIQKDKRALKF 182
KGH T+LP + + + KG S K R+LV+E+ G APYE+R++E+L+I KDKRALKF
Sbjct: 15 KGHAATQLPVKQRQNRHKGVASKKTKIVRELVREITGFAPYERRVLEMLRISKDKRALKF 74
Query: 183 AKRRIGGHSRAKRVRENMSKVVRNMRK 263
KRRIG H RAK RE + V+ RK
Sbjct: 75 LKRRIGTHRRAKGKREELQNVIIAQRK 101
>sp|P49630|RL36_DROME 60S ribosomal protein L36 (Minute(1)1B protein)
Length = 115
Score = 91.7 bits (226), Expect = 5e-19
Identities = 49/97 (50%), Positives = 63/97 (64%), Gaps = 10/97 (10%)
Frame = +3
Query: 3 KGHVVTKLP----------KRVKPSHSKGKQSSSAKFCRDLVKEMVGLAPYEKRIIELLK 152
KGH +K+ K ++ S K Q+ KF RDLV+E+VG APYEKR +ELLK
Sbjct: 13 KGHKTSKIRNVKYTGDKKVKGLRGSRLKNIQTRHTKFMRDLVREVVGHAPYEKRTMELLK 72
Query: 153 IQKDKRALKFAKRRIGGHSRAKRVRENMSKVVRNMRK 263
+ KDKRALKF KRR+G H RAKR RE +S ++ +RK
Sbjct: 73 VSKDKRALKFLKRRLGTHIRAKRKREELSNILTQLRK 109
>sp|P47964|RL36_MOUSE 60S ribosomal protein L36
Length = 105
Score = 89.7 bits (221), Expect = 2e-18
Identities = 42/87 (48%), Positives = 60/87 (68%)
Frame = +3
Query: 3 KGHVVTKLPKRVKPSHSKGKQSSSAKFCRDLVKEMVGLAPYEKRIIELLKIQKDKRALKF 182
KGH VTK + + S + + ++ KF RD+++E+ G APYE+R +ELLK+ K KRALKF
Sbjct: 13 KGHKVTKNVSKPRHSRRRSRLTNHTKFVRDMIREVCGFAPYERRAMELLKVSKSKRALKF 72
Query: 183 AKRRIGGHSRAKRVRENMSKVVRNMRK 263
K+R+G H RAKR RE +S V+ M +
Sbjct: 73 IKKRVGTHIRAKRKREELSNVLAAMEE 99
>sp|Q9LRB8|RL36_ENTCP 60S ribosomal protein L36
Length = 101
Score = 88.2 bits (217), Expect = 5e-18
Identities = 44/86 (51%), Positives = 58/86 (67%)
Frame = +3
Query: 3 KGHVVTKLPKRVKPSHSKGKQSSSAKFCRDLVKEMVGLAPYEKRIIELLKIQKDKRALKF 182
KGH VTK +PS KG S K R +V+E+ G APYE+R++ELLK+ KDKRALK
Sbjct: 10 KGHQVTKKAGTPRPSRRKGFLSQRVKKVRAVVREVAGWAPYERRVMELLKVGKDKRALKM 69
Query: 183 AKRRIGGHSRAKRVRENMSKVVRNMR 260
KR++G H R K+ RE M+ V+R M+
Sbjct: 70 CKRKLGTHMRGKKKREEMAGVLRKMQ 95
>sp|Q9HFR7|RL36_TRIHM 60S ribosomal protein L36 (TRP36)
Length = 105
Score = 80.9 bits (198), Expect = 8e-16
Identities = 40/87 (45%), Positives = 56/87 (64%)
Frame = +3
Query: 3 KGHVVTKLPKRVKPSHSKGKQSSSAKFCRDLVKEMVGLAPYEKRIIELLKIQKDKRALKF 182
KGH T + + S +KG S F R++VKE+ GLAPYE+R+IELL+ KDKRA K
Sbjct: 17 KGHKTTARVVKPRVSRTKGHLSKRTAFVREVVKEVAGLAPYERRVIELLRNSKDKRARKL 76
Query: 183 AKRRIGGHSRAKRVRENMSKVVRNMRK 263
AK+R+G RAKR + + +V+ R+
Sbjct: 77 AKKRLGTFGRAKRKVDELQRVIAESRR 103
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,059,829
Number of Sequences: 369166
Number of extensions: 568403
Number of successful extensions: 1525
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1525
length of database: 68,354,980
effective HSP length: 68
effective length of database: 55,793,000
effective search space used: 1673790000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)