Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_P07
(886 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P37879|SYK_CRIGR Lysyl-tRNA synthetase (Lysine--tRNA lig... 427 e-119
sp|Q99MN1|SYK_MOUSE Lysyl-tRNA synthetase (Lysine--tRNA lig... 426 e-119
sp|Q15046|SYK_HUMAN Lysyl-tRNA synthetase (Lysine--tRNA lig... 424 e-118
sp|Q22099|SYK_CAEEL Lysyl-tRNA synthetase (Lysine--tRNA lig... 419 e-117
sp|Q6F2U9|SYK_ORYSA Lysyl-tRNA synthetase (Lysine--tRNA lig... 414 e-115
sp|Q9ZPI1|SYK_ARATH Lysyl-tRNA synthetase (Lysine--tRNA lig... 400 e-111
sp|P15180|SYKC_YEAST Lysyl-tRNA synthetase, cytoplasmic (Ly... 379 e-105
sp|Q43776|SYK_LYCES Lysyl-tRNA synthetase (Lysine--tRNA lig... 362 e-100
sp|O67258|SYK_AQUAE Lysyl-tRNA synthetase (Lysine--tRNA lig... 286 7e-77
sp|Q899G7|SYK_CLOTE Lysyl-tRNA synthetase (Lysine--tRNA lig... 280 3e-75
>sp|P37879|SYK_CRIGR Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
Length = 597
Score = 427 bits (1097), Expect = e-119
Identities = 202/298 (67%), Positives = 247/298 (82%), Gaps = 3/298 (1%)
Frame = +2
Query: 2 GAAAKPFKTYHNDFNMDMYLRIAPELFLKELIIGGMNRVFEIGKQFRNESVDLTHNPEFT 181
GA AKPF TYHN+ +M++Y+RIAPEL+ K L++GG++RV+EIG+QFRNE +DLTHNPEFT
Sbjct: 277 GAVAKPFITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFT 336
Query: 182 TCEFYMAFADYFDLITVTEDLLSNLVKELFGDYIVKYNKDG---KTYEIDFKPPYQRIDM 352
TCEFYMA+ADY DL+ +TE +LS +VK + G Y + Y+ DG + YEIDF PP++RI M
Sbjct: 337 TCEFYMAYADYHDLMEITEKMLSGMVKSITGSYKITYHPDGPEGEAYEIDFTPPFRRISM 396
Query: 353 MTGLEEALKMKLPLPTELGTEESRLILDKICADNNVECSAPRTTARLLDKLVGEYLEEKC 532
+ LE+AL +KLP + TEE+R ILD IC VEC PRTTARLLDKLVGE+LE C
Sbjct: 397 VEELEKALGVKLPETSLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTC 456
Query: 533 INPTFIMNHPEIMSPLAKWHRNVPGLTERFELFVMKKELCNAYTELNDPIVQRERFEQQA 712
INPTFI +HP+IMSPLAKWHR+ GLTERFELFVMKKE+CNAYTELNDP+ QR+ FE+QA
Sbjct: 457 INPTFICDHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPMRQRQLFEEQA 516
Query: 713 KDKAAGDEEAMFVDETFLEAMELGMPPTAGWGLGIDRLTMFLTDTDNIKEVLCFPAMK 886
K KAAGD+EAMF+DE F A+E G+PPTAGWG+GIDR+TMFLTD++NIKEVL FPAMK
Sbjct: 517 KAKAAGDDEAMFIDENFCTALEYGLPPTAGWGMGIDRVTMFLTDSNNIKEVLLFPAMK 574
>sp|Q99MN1|SYK_MOUSE Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
Length = 595
Score = 426 bits (1096), Expect = e-119
Identities = 201/298 (67%), Positives = 247/298 (82%), Gaps = 3/298 (1%)
Frame = +2
Query: 2 GAAAKPFKTYHNDFNMDMYLRIAPELFLKELIIGGMNRVFEIGKQFRNESVDLTHNPEFT 181
GA AKPF TYHN+ +M++Y+RIAPEL+ K L++GG++RV+EIG+QFRNE +DLTHNPEFT
Sbjct: 275 GAVAKPFITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFT 334
Query: 182 TCEFYMAFADYFDLITVTEDLLSNLVKELFGDYIVKYNKDG---KTYEIDFKPPYQRIDM 352
TCEFYMA+ADY DL+ +TE +LS +VK + G Y + Y+ DG + YE+DF PP++RI M
Sbjct: 335 TCEFYMAYADYHDLMEITEKMLSGMVKSITGSYKITYHPDGPEGQAYEVDFTPPFRRISM 394
Query: 353 MTGLEEALKMKLPLPTELGTEESRLILDKICADNNVECSAPRTTARLLDKLVGEYLEEKC 532
+ LE+AL +KLP + TEE+R ILD IC VEC PRTTARLLDKLVGE+LE C
Sbjct: 395 VEELEKALGVKLPETSLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTC 454
Query: 533 INPTFIMNHPEIMSPLAKWHRNVPGLTERFELFVMKKELCNAYTELNDPIVQRERFEQQA 712
I+PTFI +HP+IMSPLAKWHR+ GLTERFELFVMKKE+CNAYTELNDP+ QR+ FE+QA
Sbjct: 455 ISPTFICDHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQA 514
Query: 713 KDKAAGDEEAMFVDETFLEAMELGMPPTAGWGLGIDRLTMFLTDTDNIKEVLCFPAMK 886
K KAAGD+EAMF+DE F A+E G+PPTAGWG+GIDRLTMFLTD++NIKEVL FPAMK
Sbjct: 515 KAKAAGDDEAMFIDENFCTALEYGLPPTAGWGMGIDRLTMFLTDSNNIKEVLLFPAMK 572
>sp|Q15046|SYK_HUMAN Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
Length = 597
Score = 424 bits (1090), Expect = e-118
Identities = 200/298 (67%), Positives = 246/298 (82%), Gaps = 3/298 (1%)
Frame = +2
Query: 2 GAAAKPFKTYHNDFNMDMYLRIAPELFLKELIIGGMNRVFEIGKQFRNESVDLTHNPEFT 181
GA AKPF TYHN+ +M++Y+RIAPEL+ K L++GG++RV+EIG+QFRNE +DLTHNPEFT
Sbjct: 277 GAVAKPFITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFT 336
Query: 182 TCEFYMAFADYFDLITVTEDLLSNLVKELFGDYIVKYNKDG---KTYEIDFKPPYQRIDM 352
TCEFYMA+ADY DL+ +TE ++S +VK + G Y V Y+ DG + Y++DF PP++RI+M
Sbjct: 337 TCEFYMAYADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYDVDFTPPFRRINM 396
Query: 353 MTGLEEALKMKLPLPTELGTEESRLILDKICADNNVECSAPRTTARLLDKLVGEYLEEKC 532
+ LE+AL MKLP TEE+R ILD IC VEC PRTTARLLDKLVGE+LE C
Sbjct: 397 VEELEKALGMKLPETNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTC 456
Query: 533 INPTFIMNHPEIMSPLAKWHRNVPGLTERFELFVMKKELCNAYTELNDPIVQRERFEQQA 712
INPTFI +HP+IMSPLAKWHR+ GLTERFELFVMKKE+CNAYTELNDP+ QR+ FE+QA
Sbjct: 457 INPTFICDHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPMRQRQLFEEQA 516
Query: 713 KDKAAGDEEAMFVDETFLEAMELGMPPTAGWGLGIDRLTMFLTDTDNIKEVLCFPAMK 886
K KAAGD+EAMF+DE F A+E G+PPTAGWG+GIDR+ MFLTD++NIKEVL FPAMK
Sbjct: 517 KAKAAGDDEAMFIDENFCTALEYGLPPTAGWGMGIDRVAMFLTDSNNIKEVLLFPAMK 574
>sp|Q22099|SYK_CAEEL Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
Length = 572
Score = 419 bits (1078), Expect = e-117
Identities = 193/299 (64%), Positives = 245/299 (81%), Gaps = 4/299 (1%)
Frame = +2
Query: 2 GAAAKPFKTYHNDFNMDMYLRIAPELFLKELIIGGMNRVFEIGKQFRNESVDLTHNPEFT 181
GA AKPF T+HND +M+++LR+APEL+ K L++GG++RV+E+G+ FRNE +DLTHNPEFT
Sbjct: 256 GATAKPFITHHNDLDMNLFLRVAPELYHKMLVVGGIDRVYEVGRLFRNEGIDLTHNPEFT 315
Query: 182 TCEFYMAFADYFDLITVTEDLLSNLVKELFGDYIVKYNKDGKT----YEIDFKPPYQRID 349
TCEFYMA+ADY D+I +TEDLLS++V + G Y ++Y+ +G YE+DF PP++R+
Sbjct: 316 TCEFYMAYADYEDVIQLTEDLLSSMVMSIKGTYKIEYHPNGPNTEPVYEVDFTPPFKRVH 375
Query: 350 MMTGLEEALKMKLPLPTELGTEESRLILDKICADNNVECSAPRTTARLLDKLVGEYLEEK 529
M GL E L LP P+ L TEE+R + DK+C DNNV+CSAPRTTARLLDKLVGEYLE
Sbjct: 376 MYDGLAEKLGATLPDPSTLHTEEAREVFDKLCRDNNVDCSAPRTTARLLDKLVGEYLEST 435
Query: 530 CINPTFIMNHPEIMSPLAKWHRNVPGLTERFELFVMKKELCNAYTELNDPIVQRERFEQQ 709
I+PTF++ HP+IMSPLAKWHR++PGLTERFELF + +E+ NAYTELNDPI QR+RFEQQ
Sbjct: 436 FISPTFLIGHPQIMSPLAKWHRSIPGLTERFELFAVTREIANAYTELNDPITQRQRFEQQ 495
Query: 710 AKDKAAGDEEAMFVDETFLEAMELGMPPTAGWGLGIDRLTMFLTDTDNIKEVLCFPAMK 886
AKDK AGD+EA +DETF A+E G+PPT GWG+GIDRL+M LTD +NIKEVL FPAM+
Sbjct: 496 AKDKDAGDDEAQMIDETFCNALEYGLPPTGGWGMGIDRLSMILTDNNNIKEVLLFPAMR 554
>sp|Q6F2U9|SYK_ORYSA Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
Length = 602
Score = 414 bits (1065), Expect = e-115
Identities = 196/298 (65%), Positives = 243/298 (81%), Gaps = 3/298 (1%)
Frame = +2
Query: 2 GAAAKPFKTYHNDFNMDMYLRIAPELFLKELIIGGMNRVFEIGKQFRNESVDLTHNPEFT 181
GAAA+PF T+HN+ NM +Y+RIAPEL+LKEL++GG++RV+EIGKQFRNE +DLTHNPEFT
Sbjct: 304 GAAARPFVTHHNELNMRLYMRIAPELYLKELVVGGLDRVYEIGKQFRNEGIDLTHNPEFT 363
Query: 182 TCEFYMAFADYFDLITVTEDLLSNLVKELFGDYIVKYNKDG---KTYEIDFKPPYQRIDM 352
TCEFYMA+ADY DLI +TE +LS +VKEL G Y +KY+ +G EIDF PP+++IDM
Sbjct: 364 TCEFYMAYADYNDLIELTETMLSGMVKELTGGYKIKYHANGVEKPPIEIDFTPPFRKIDM 423
Query: 353 MTGLEEALKMKLPLPTELGTEESRLILDKICADNNVECSAPRTTARLLDKLVGEYLEEKC 532
+ LE K+ +P +L ++E+ L CA +V+C P+TT RLLDKLVG +LEE C
Sbjct: 424 IEELEAMAKLNIP--KDLSSDEANKYLIDACAKYDVKCPPPQTTTRLLDKLVGHFLEETC 481
Query: 533 INPTFIMNHPEIMSPLAKWHRNVPGLTERFELFVMKKELCNAYTELNDPIVQRERFEQQA 712
+NPTFI+NHPEIMSPLAKWHR+ PGLTERFELFV K E+CNAYTELNDP+VQR+RFE+Q
Sbjct: 482 VNPTFIINHPEIMSPLAKWHRSRPGLTERFELFVNKHEVCNAYTELNDPVVQRQRFEEQL 541
Query: 713 KDKAAGDEEAMFVDETFLEAMELGMPPTAGWGLGIDRLTMFLTDTDNIKEVLCFPAMK 886
KD+ +GD+EAM +DETF A+E G+PPT GWGLGIDRLTM LTD+ NIKEVL FPAMK
Sbjct: 542 KDRQSGDDEAMALDETFCTALEYGLPPTGGWGLGIDRLTMLLTDSQNIKEVLLFPAMK 599
>sp|Q9ZPI1|SYK_ARATH Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
Length = 626
Score = 400 bits (1029), Expect = e-111
Identities = 193/298 (64%), Positives = 239/298 (80%), Gaps = 3/298 (1%)
Frame = +2
Query: 2 GAAAKPFKTYHNDFNMDMYLRIAPELFLKELIIGGMNRVFEIGKQFRNESVDLTHNPEFT 181
GAAA+PF T+HND +M +Y+RIAPEL+LK+LI+GG+ RV+EIGKQFRNE +DLTHNPEFT
Sbjct: 313 GAAARPFVTHHNDLDMRLYMRIAPELYLKQLIVGGLERVYEIGKQFRNEGIDLTHNPEFT 372
Query: 182 TCEFYMAFADYFDLITVTEDLLSNLVKELFGDYIVKYNKDG---KTYEIDFKPPYQRIDM 352
TCEFYMAFADY DL+ +TE +LS +VKEL G Y +KYN +G EIDF PP++RI+M
Sbjct: 373 TCEFYMAFADYNDLMEMTEVMLSGMVKELTGGYKIKYNANGYDKDPIEIDFTPPFRRIEM 432
Query: 353 MTGLEEALKMKLPLPTELGTEESRLILDKICADNNVECSAPRTTARLLDKLVGEYLEEKC 532
+ LE+ K+ +P +L +EE+ L CA +V+C P+TTARLLDKLVGE+LE C
Sbjct: 433 IGELEKVAKLNIP--KDLASEEANKYLIDACARFDVKCPPPQTTARLLDKLVGEFLEPTC 490
Query: 533 INPTFIMNHPEIMSPLAKWHRNVPGLTERFELFVMKKELCNAYTELNDPIVQRERFEQQA 712
+NPTFI+N PEIMSPLAKWHR+ GLTERFELF+ K ELCNAYTELNDP+VQR+RF Q
Sbjct: 491 VNPTFIINQPEIMSPLAKWHRSKSGLTERFELFINKHELCNAYTELNDPVVQRQRFADQL 550
Query: 713 KDKAAGDEEAMFVDETFLEAMELGMPPTAGWGLGIDRLTMFLTDTDNIKEVLCFPAMK 886
KD+ +GD+EAM +DETF A+E G+ PT GWGLGIDRL+M LTD+ NIKEVL FPAM+
Sbjct: 551 KDRQSGDDEAMALDETFCNALEYGLAPTGGWGLGIDRLSMLLTDSLNIKEVLFFPAMR 608
>sp|P15180|SYKC_YEAST Lysyl-tRNA synthetase, cytoplasmic (Lysine--tRNA ligase) (LysRS)
Length = 591
Score = 379 bits (974), Expect = e-105
Identities = 180/299 (60%), Positives = 229/299 (76%), Gaps = 4/299 (1%)
Frame = +2
Query: 2 GAAAKPFKTYHNDFNMDMYLRIAPELFLKELIIGGMNRVFEIGKQFRNESVDLTHNPEFT 181
GA AKPF T+HND +MDMY+RIAPELFLK+L++GG++RV+EIG+QFRNE +D+THNPEFT
Sbjct: 280 GATAKPFITHHNDLDMDMYMRIAPELFLKQLVVGGLDRVYEIGRQFRNEGIDMTHNPEFT 339
Query: 182 TCEFYMAFADYFDLITVTEDLLSNLVKELFGDYIVKYNKD----GKTYEIDFKPPYQRID 349
TCEFY A+AD +DL+ +TE + S +VKE+ G YI+KY+ D K E++F P++RI+
Sbjct: 340 TCEFYQAYADVYDLMDMTELMFSEMVKEITGSYIIKYHPDPADPAKELELNFSRPWKRIN 399
Query: 350 MMTGLEEALKMKLPLPTELGTEESRLILDKICADNNVECSAPRTTARLLDKLVGEYLEEK 529
M+ LE+ +K P +L T E+ L KI DN +EC P T AR+LDKLVGE LE+
Sbjct: 400 MIEELEKVFNVKFPSGDQLHTAETGEFLKKILVDNKLECPPPLTNARMLDKLVGE-LEDT 458
Query: 530 CINPTFIMNHPEIMSPLAKWHRNVPGLTERFELFVMKKELCNAYTELNDPIVQRERFEQQ 709
CINPTFI HP++MSPLAK+ R+ PGL ERFE+FV KE+CNAYTELNDP QR RFE+Q
Sbjct: 459 CINPTFIFGHPQMMSPLAKYSRDQPGLCERFEVFVATKEICNAYTELNDPFDQRARFEEQ 518
Query: 710 AKDKAAGDEEAMFVDETFLEAMELGMPPTAGWGLGIDRLTMFLTDTDNIKEVLCFPAMK 886
A+ K GD+EA VDETF A+E G+PPT GWG GIDRL MFLTD++ I+EVL FP +K
Sbjct: 519 ARQKDQGDDEAQLVDETFCNALEYGLPPTGGWGCGIDRLAMFLTDSNTIREVLLFPTLK 577
>sp|Q43776|SYK_LYCES Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
Length = 588
Score = 362 bits (929), Expect = e-100
Identities = 168/298 (56%), Positives = 231/298 (77%), Gaps = 3/298 (1%)
Frame = +2
Query: 2 GAAAKPFKTYHNDFNMDMYLRIAPELFLKELIIGGMNRVFEIGKQFRNESVDLTHNPEFT 181
GA+A+PF T+HN+ + ++ +R++PEL+LK+L++GG +RV+E+GK FRNE +DLTH+PEFT
Sbjct: 291 GASARPFITHHNELDTELLIRVSPELYLKKLVVGGFDRVYELGKHFRNEGMDLTHSPEFT 350
Query: 182 TCEFYMAFADYFDLITVTEDLLSNLVKELFGDYIVKYNKDG---KTYEIDFKPPYQRIDM 352
CE YMA+ADY DL+ +TE LLS +VK+L G Y ++Y+ +G + EIDF PP+++IDM
Sbjct: 351 MCELYMAYADYNDLMDLTEQLLSGMVKDLTGSYKIRYHANGLDNEPIEIDFTPPFRKIDM 410
Query: 353 MTGLEEALKMKLPLPTELGTEESRLILDKICADNNVECSAPRTTARLLDKLVGEYLEEKC 532
++ LE+ + +P +L +E + L +C +V+C P TT RLLDKLVG ++E C
Sbjct: 411 LSELEKVANISIP--RDLSSESANKHLVDVCEKFDVKCPPPHTTTRLLDKLVGHFIEVNC 468
Query: 533 INPTFIMNHPEIMSPLAKWHRNVPGLTERFELFVMKKELCNAYTELNDPIVQRERFEQQA 712
INPTFI+NHPEIMSPLAK R+ PGLTERF LFV ++ELC+AYTELNDP QRERF +Q
Sbjct: 469 INPTFIINHPEIMSPLAKSRRSEPGLTERFNLFVNRRELCDAYTELNDPTAQRERFAEQL 528
Query: 713 KDKAAGDEEAMFVDETFLEAMELGMPPTAGWGLGIDRLTMFLTDTDNIKEVLCFPAMK 886
KD+ GD+EAM +DE+F+ A+E G+PPT G G+GIDRLTM LTD+ N+KEV+ FPAM+
Sbjct: 529 KDRQLGDDEAMDLDESFITALEYGLPPTGGLGMGIDRLTMLLTDSQNVKEVILFPAMR 586
>sp|O67258|SYK_AQUAE Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
Length = 597
Score = 286 bits (731), Expect = 7e-77
Identities = 149/300 (49%), Positives = 198/300 (66%), Gaps = 5/300 (1%)
Frame = +2
Query: 2 GAAAKPFKTYHNDFNMDMYLRIAPELFLKELIIGGMNRVFEIGKQFRNESVDLTHNPEFT 181
GA A+PF TYHN ++YLRIAPEL+LK LI+GG RV+EIGK FRNESVD THNPEFT
Sbjct: 303 GANARPFVTYHNFLETELYLRIAPELYLKRLIVGGFPRVYEIGKNFRNESVDRTHNPEFT 362
Query: 182 TCEFYMAFADYFDLITVTEDLLSNLVKELFGDYIVKYNKDGKTYEIDFKPPYQRIDMMTG 361
EFY A+ DY DLI TED+ L+++ G VKY + +E+DF PP++++
Sbjct: 363 MVEFYAAYWDYHDLIKFTEDMFVYLLEKTLGTLKVKYGE----WELDFSPPFKKVRYFDL 418
Query: 362 LEEALKMKLPLPTELGTEESRLILD-----KICADNNVECSAPRTTARLLDKLVGEYLEE 526
L+E + G ++ + D K+ + + T A+LLDK+ + EE
Sbjct: 419 LKE----------KTGKDKDFFLKDLEGLRKLAKELEIPDVERMTHAKLLDKVFEKVAEE 468
Query: 527 KCINPTFIMNHPEIMSPLAKWHRNVPGLTERFELFVMKKELCNAYTELNDPIVQRERFEQ 706
I PTF+++ P+I+SPLAK HR P L ERFEL + + E+ NAYTELNDP Q+ERF +
Sbjct: 469 DLIQPTFVIDFPKILSPLAKTHREDPDLVERFELIIARYEVANAYTELNDPFDQKERFLE 528
Query: 707 QAKDKAAGDEEAMFVDETFLEAMELGMPPTAGWGLGIDRLTMFLTDTDNIKEVLCFPAMK 886
Q K+K GDEEAM +DE F+ A+E GMPPTAG G+GIDRL M L +TD+I+EV+ FP +K
Sbjct: 529 QLKEKQMGDEEAMDMDEDFIRALEYGMPPTAGEGIGIDRLVMILANTDSIREVILFPQLK 588
>sp|Q899G7|SYK_CLOTE Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
Length = 502
Score = 280 bits (717), Expect = 3e-75
Identities = 142/295 (48%), Positives = 203/295 (68%)
Frame = +2
Query: 2 GAAAKPFKTYHNDFNMDMYLRIAPELFLKELIIGGMNRVFEIGKQFRNESVDLTHNPEFT 181
GAAA+PF T+HN ++DMYLRIA EL+LK LI+GG +V+EIGK FRNE +D+ HNPEFT
Sbjct: 211 GAAARPFTTHHNALDIDMYLRIATELYLKRLIVGGFEKVYEIGKNFRNEGIDIRHNPEFT 270
Query: 182 TCEFYMAFADYFDLITVTEDLLSNLVKELFGDYIVKYNKDGKTYEIDFKPPYQRIDMMTG 361
E Y A+ADY D++ +TE++++ + +++ G+ VKY + EI+F+PP++RI M+
Sbjct: 271 MIELYEAYADYNDMMEITENMVAYIAEKVCGNTKVKYEET----EIEFRPPWKRITMVDS 326
Query: 362 LEEALKMKLPLPTELGTEESRLILDKICADNNVECSAPRTTARLLDKLVGEYLEEKCINP 541
++E + E+ T+E L K + T A +L+ EY+E+ I P
Sbjct: 327 VKEYSGVDF---NEIKTDEEARELVKGKDFELKKKLEDCTKADILNLFFEEYVEKNLIQP 383
Query: 542 TFIMNHPEIMSPLAKWHRNVPGLTERFELFVMKKELCNAYTELNDPIVQRERFEQQAKDK 721
TF+ ++P +SPL+K + P TERFE FV +ELCNAYTELNDPIVQ+ERF QQ K++
Sbjct: 384 TFVCDYPVEISPLSKKKNDNPEYTERFEGFVYGRELCNAYTELNDPIVQKERFIQQLKER 443
Query: 722 AAGDEEAMFVDETFLEAMELGMPPTAGWGLGIDRLTMFLTDTDNIKEVLCFPAMK 886
GD+EA +DE F+ A+E+GMPPT G G+G+DRL MFLTD+ +I++V+ FP MK
Sbjct: 444 ELGDDEAFMMDEDFINALEIGMPPTGGLGIGVDRLVMFLTDSHSIRDVILFPTMK 498
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,256,514
Number of Sequences: 369166
Number of extensions: 2287750
Number of successful extensions: 7107
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6886
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8838279920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)