Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_P01
(768 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P35565|CALX_RAT Calnexin precursor 258 1e-68
sp|P35564|CALX_MOUSE Calnexin precursor 258 1e-68
sp|P24643|CALX_CANFA Calnexin precursor (pp90) 258 1e-68
sp|Q5R440|CALX_PONPY Calnexin precursor 255 8e-68
sp|P27824|CALX_HUMAN Calnexin precursor (Major histocompati... 254 1e-67
sp|P52194|CLGN_MOUSE Calmegin precursor (MEG 1 antigen) (Ca... 221 2e-57
sp|Q38798|CALX2_ARATH Calnexin homolog 2 precursor 220 4e-57
sp|P29402|CALX1_ARATH Calnexin homolog 1 precursor 219 6e-57
sp|O14967|CLGN_HUMAN Calmegin precursor 216 5e-56
sp|Q39817|CALX_SOYBN Calnexin homolog precursor 216 5e-56
>sp|P35565|CALX_RAT Calnexin precursor
Length = 591
Score = 258 bits (660), Expect = 1e-68
Identities = 114/226 (50%), Positives = 150/226 (66%)
Frame = +3
Query: 3 SDPDAVKPGDWDDSAPEYIEDEKAVKPDGWLENEPLTVPDEKSEKPKDWDDEMDGEWEAP 182
+DPDAVKP DWD+ AP I DE+A KP+GWL++EP +PD +EKP+DWD++MDGEWEAP
Sbjct: 295 ADPDAVKPDDWDEDAPSKIPDEEATKPEGWLDDEPEYIPDPDAEKPEDWDEDMDGEWEAP 354
Query: 183 RIDNPLCKDAPGCGPWKSPKIKNPNYKGVWTAPMIDNPKYKGVWKARRIANADYFEDAQP 362
+I NP C+ APGCG W+ P I NPNYKG W PMIDNP Y+G+WK R+I N D+FED +P
Sbjct: 355 QIANPKCESAPGCGVWQRPMIDNPNYKGKWKPPMIDNPNYQGIWKPRKIPNPDFFEDLEP 414
Query: 363 YKMTPIGAIGLELWSMSDEIVFDNFIIVDNKKAADDFAAETWVVKKDAERRADPNSQSVV 542
++MTP AIGLELWSM+ +I FDNFII +++ DD+A + W +KK A+ A+P VV
Sbjct: 415 FRMTPFSAIGLELWSMTSDIFFDNFIISGDRRVVDDWANDGWGLKKAADGAAEP---GVV 471
Query: 543 DAIREATSERXXXXXXXXXXXXXXXXXXXXYCCRNSGSDKSAEYER 680
+ EA ER +CC + EY++
Sbjct: 472 GQMLEAAEERPWLWVVYILTVALPVFLVILFCCSGKKQSNAMEYKK 517
>sp|P35564|CALX_MOUSE Calnexin precursor
Length = 591
Score = 258 bits (660), Expect = 1e-68
Identities = 115/226 (50%), Positives = 150/226 (66%)
Frame = +3
Query: 3 SDPDAVKPGDWDDSAPEYIEDEKAVKPDGWLENEPLTVPDEKSEKPKDWDDEMDGEWEAP 182
+DPDAVKP DWD+ AP I DE+A KP+GWL++EP +PD +EKP+DWD++MDGEWEAP
Sbjct: 295 ADPDAVKPDDWDEDAPSKIPDEEATKPEGWLDDEPEYIPDPDAEKPEDWDEDMDGEWEAP 354
Query: 183 RIDNPLCKDAPGCGPWKSPKIKNPNYKGVWTAPMIDNPKYKGVWKARRIANADYFEDAQP 362
+I NP C+ APGCG W+ P I NPNYKG W PMIDNP Y+G+WK R+I N D+FED +P
Sbjct: 355 QIANPKCESAPGCGVWQRPMIDNPNYKGKWKPPMIDNPNYQGIWKPRKIPNPDFFEDLEP 414
Query: 363 YKMTPIGAIGLELWSMSDEIVFDNFIIVDNKKAADDFAAETWVVKKDAERRADPNSQSVV 542
+KMTP AIGLELWSM+ +I FDNFII +++ DD+A + W +KK A+ A+P VV
Sbjct: 415 FKMTPFSAIGLELWSMTSDIFFDNFIISGDRRVVDDWANDGWGLKKAADGAAEP---GVV 471
Query: 543 DAIREATSERXXXXXXXXXXXXXXXXXXXXYCCRNSGSDKSAEYER 680
+ EA ER +CC + EY++
Sbjct: 472 LQMLEAAEERPWLWVVYILTVALPVFLVILFCCSGKKQSNAMEYKK 517
>sp|P24643|CALX_CANFA Calnexin precursor (pp90)
Length = 593
Score = 258 bits (659), Expect = 1e-68
Identities = 115/225 (51%), Positives = 148/225 (65%)
Frame = +3
Query: 6 DPDAVKPGDWDDSAPEYIEDEKAVKPDGWLENEPLTVPDEKSEKPKDWDDEMDGEWEAPR 185
DPDAVKP DW++ AP I DE+A KPDGWL++EP VPD +EKP+DWD++MDGEWEAP+
Sbjct: 296 DPDAVKPDDWNEDAPAKIPDEEATKPDGWLDDEPEYVPDPDAEKPEDWDEDMDGEWEAPQ 355
Query: 186 IDNPLCKDAPGCGPWKSPKIKNPNYKGVWTAPMIDNPKYKGVWKARRIANADYFEDAQPY 365
I NP C+ APGCG W+ P I NPNYKG W PMIDNP Y+G+WK R+I N D+FED +P+
Sbjct: 356 IANPKCESAPGCGVWQRPMIDNPNYKGKWKPPMIDNPNYQGIWKPRKIPNPDFFEDLEPF 415
Query: 366 KMTPIGAIGLELWSMSDEIVFDNFIIVDNKKAADDFAAETWVVKKDAERRADPNSQSVVD 545
KMTP AIGLELWSM+ +I FDNFI+ +++ DD+A + W +KK A+ A+P VV
Sbjct: 416 KMTPFSAIGLELWSMTSDIFFDNFIVCGDRRVVDDWANDGWGLKKAADGAAEP---GVVG 472
Query: 546 AIREATSERXXXXXXXXXXXXXXXXXXXXYCCRNSGSDKSAEYER 680
+ EA ER +CC EY++
Sbjct: 473 QMIEAAEERPWLWVVYVLTVALPVFLVILFCCSGKKQSSPVEYKK 517
>sp|Q5R440|CALX_PONPY Calnexin precursor
Length = 592
Score = 255 bits (652), Expect = 8e-68
Identities = 114/225 (50%), Positives = 149/225 (66%)
Frame = +3
Query: 6 DPDAVKPGDWDDSAPEYIEDEKAVKPDGWLENEPLTVPDEKSEKPKDWDDEMDGEWEAPR 185
DP+AVKP DWD+ AP I DE+A KP+GWL++EP VPD +EKP+DWD++MDGEWEAP+
Sbjct: 295 DPEAVKPDDWDEDAPAKIPDEEATKPEGWLDDEPEYVPDPDAEKPEDWDEDMDGEWEAPQ 354
Query: 186 IDNPLCKDAPGCGPWKSPKIKNPNYKGVWTAPMIDNPKYKGVWKARRIANADYFEDAQPY 365
I NP C+ APGCG W+ P I NPNYKG W PMIDNP Y+G+WK R+I N D+FED +P+
Sbjct: 355 IANPKCESAPGCGVWQRPMIDNPNYKGKWKPPMIDNPSYQGIWKPRKIPNPDFFEDLEPF 414
Query: 366 KMTPIGAIGLELWSMSDEIVFDNFIIVDNKKAADDFAAETWVVKKDAERRADPNSQSVVD 545
+MTP AIGLELWSM+ +I FDNFII +++ DD+A + W +KK A+ A+P VV
Sbjct: 415 RMTPFSAIGLELWSMTSDIFFDNFIICADRRIVDDWANDGWGLKKAADGAAEP---GVVG 471
Query: 546 AIREATSERXXXXXXXXXXXXXXXXXXXXYCCRNSGSDKSAEYER 680
+ EA ER +CC + EY++
Sbjct: 472 QMIEAAEERPWLWVVYILTVALPVFLVILFCCSGKKQTSAMEYKK 516
>sp|P27824|CALX_HUMAN Calnexin precursor (Major histocompatibility complex class I
antigen-binding protein p88) (p90) (IP90)
Length = 592
Score = 254 bits (650), Expect = 1e-67
Identities = 114/225 (50%), Positives = 148/225 (65%)
Frame = +3
Query: 6 DPDAVKPGDWDDSAPEYIEDEKAVKPDGWLENEPLTVPDEKSEKPKDWDDEMDGEWEAPR 185
DP+AVKP DWD+ AP I DE+A KP+GWL++EP VPD +EKP+DWD++MDGEWEAP+
Sbjct: 295 DPEAVKPDDWDEDAPAKIPDEEATKPEGWLDDEPEYVPDPDAEKPEDWDEDMDGEWEAPQ 354
Query: 186 IDNPLCKDAPGCGPWKSPKIKNPNYKGVWTAPMIDNPKYKGVWKARRIANADYFEDAQPY 365
I NP C+ APGCG W+ P I NPNYKG W PMIDNP Y+G+WK R+I N D+FED +P+
Sbjct: 355 IANPRCESAPGCGVWQRPVIDNPNYKGKWKPPMIDNPSYQGIWKPRKIPNPDFFEDLEPF 414
Query: 366 KMTPIGAIGLELWSMSDEIVFDNFIIVDNKKAADDFAAETWVVKKDAERRADPNSQSVVD 545
+MTP AIGLELWSM+ +I FDNFII +++ DD+A + W +KK A+ A+P VV
Sbjct: 415 RMTPFSAIGLELWSMTSDIFFDNFIICADRRIVDDWANDGWGLKKAADGAAEP---GVVG 471
Query: 546 AIREATSERXXXXXXXXXXXXXXXXXXXXYCCRNSGSDKSAEYER 680
+ EA ER +CC EY++
Sbjct: 472 QMIEAAEERPWLWVVYILTVALPVFLVILFCCSGKKQTSGMEYKK 516
>sp|P52194|CLGN_MOUSE Calmegin precursor (MEG 1 antigen) (Calnexin-T) (A2/6)
Length = 611
Score = 221 bits (563), Expect = 2e-57
Identities = 100/189 (52%), Positives = 128/189 (67%)
Frame = +3
Query: 6 DPDAVKPGDWDDSAPEYIEDEKAVKPDGWLENEPLTVPDEKSEKPKDWDDEMDGEWEAPR 185
DP AVKP DWD++ P IED AVKPDGWL++EP +P+ K+EKP+DW D+MDGEWEAP
Sbjct: 286 DPTAVKPEDWDENEPAQIEDSSAVKPDGWLDDEPKFIPNPKAEKPEDWSDDMDGEWEAPH 345
Query: 186 IDNPLCKDAPGCGPWKSPKIKNPNYKGVWTAPMIDNPKYKGVWKARRIANADYFEDAQPY 365
I NP C+ GCG WK P I NP YKG+W PMI+NP Y+G+W ++I N DYFED P+
Sbjct: 346 IPNPACQI--GCGEWKPPMIDNPKYKGIWRPPMINNPNYQGLWSPQKIPNPDYFEDDHPF 403
Query: 366 KMTPIGAIGLELWSMSDEIVFDNFIIVDNKKAADDFAAETWVVKKDAERRADPNSQSVVD 545
+T A+GLELWSM+ +I FDNFII K+ AD +A + W +K A+ N V+
Sbjct: 404 LLTSFSALGLELWSMTPDIYFDNFIICSEKEVADQWATDGWELKIMV---ANANEPGVLR 460
Query: 546 AIREATSER 572
+ A ER
Sbjct: 461 QLVIAAEER 469
>sp|Q38798|CALX2_ARATH Calnexin homolog 2 precursor
Length = 532
Score = 220 bits (560), Expect = 4e-57
Identities = 96/186 (51%), Positives = 131/186 (70%), Gaps = 3/186 (1%)
Frame = +3
Query: 6 DPDAVKPGDWDDSAPEYIEDEKAVKPDGWLENEPLTVPDEKSEKPKDWDDEMDGEWEAPR 185
DP+AVKP DWD+ AP IEDE+A KP+GWL++EP+ V D ++ KP+DWDDE DGEWEAP+
Sbjct: 244 DPNAVKPDDWDEDAPMEIEDEEAEKPEGWLDDEPVEVEDPEASKPEDWDDEEDGEWEAPK 303
Query: 186 IDNPLCKDAPGCGPWKSPKIKNPNYKGVWTAPMIDNPKYKGVWKARRIANADYFEDAQPY 365
+ N C+ APGCG WK P +NP YKG W++P+IDNP YKG+WK R I N DYFE +P
Sbjct: 304 VSNTKCEAAPGCGEWKRPMKRNPAYKGKWSSPLIDNPAYKGIWKPRDIPNPDYFELERP- 362
Query: 366 KMTPIGAIGLELWSMSDEIVFDNFIIVDNKKAADDFAAETWVVKKDAER---RADPNSQS 536
+ PI AIG+E+W+M D I+FDN +I ++K A+ + TW K D E+ +A+ +
Sbjct: 363 NLEPIAAIGIEIWTMQDGILFDNILISKDEKVAETYRQSTWKPKFDVEKEKQKAEDEAAG 422
Query: 537 VVDAIR 554
D ++
Sbjct: 423 EADGLK 428
>sp|P29402|CALX1_ARATH Calnexin homolog 1 precursor
Length = 530
Score = 219 bits (558), Expect = 6e-57
Identities = 98/186 (52%), Positives = 130/186 (69%), Gaps = 3/186 (1%)
Frame = +3
Query: 6 DPDAVKPGDWDDSAPEYIEDEKAVKPDGWLENEPLTVPDEKSEKPKDWDDEMDGEWEAPR 185
DP+AVKP DWD+ AP IEDE+A KP+GWL++EP V D ++ KP+DWDDE DG WEAP+
Sbjct: 242 DPNAVKPEDWDEDAPMEIEDEEAEKPEGWLDDEPEEVDDPEATKPEDWDDEEDGMWEAPK 301
Query: 186 IDNPLCKDAPGCGPWKSPKIKNPNYKGVWTAPMIDNPKYKGVWKARRIANADYFEDAQPY 365
IDNP C+ APGCG WK P +NP YKG W++P+IDNP YKG+WK R I N DYFE +P
Sbjct: 302 IDNPKCEAAPGCGEWKRPMKRNPAYKGKWSSPLIDNPAYKGIWKPRDIPNPDYFELDRP- 360
Query: 366 KMTPIGAIGLELWSMSDEIVFDNFIIVDNKKAADDFAAETWVVKKDAER---RADPNSQS 536
PI AIG+E+W+M D I+FDN +I ++K A+ + TW K D E+ +A+ +
Sbjct: 361 DYEPIAAIGIEIWTMQDGILFDNILIAKDEKVAETYRQTTWKPKFDVEKEKQKAEEEAAG 420
Query: 537 VVDAIR 554
D ++
Sbjct: 421 SADGLK 426
>sp|O14967|CLGN_HUMAN Calmegin precursor
Length = 610
Score = 216 bits (550), Expect = 5e-56
Identities = 92/161 (57%), Positives = 115/161 (71%)
Frame = +3
Query: 6 DPDAVKPGDWDDSAPEYIEDEKAVKPDGWLENEPLTVPDEKSEKPKDWDDEMDGEWEAPR 185
DP AVKP DWD+S P IED VKP GWL++EP +PD +EKP DW+++ DGEWEAP+
Sbjct: 286 DPSAVKPEDWDESEPAQIEDSSVVKPAGWLDDEPKFIPDPNAEKPDDWNEDTDGEWEAPQ 345
Query: 186 IDNPLCKDAPGCGPWKSPKIKNPNYKGVWTAPMIDNPKYKGVWKARRIANADYFEDAQPY 365
I NP C+ GCG WK P I NP YKGVW P++DNP Y+G+W R+I N DYFED P+
Sbjct: 346 ILNPACRI--GCGEWKPPMIDNPKYKGVWRPPLVDNPNYQGIWSPRKIPNPDYFEDDHPF 403
Query: 366 KMTPIGAIGLELWSMSDEIVFDNFIIVDNKKAADDFAAETW 488
+T A+GLELWSM+ +I FDNFII K+ AD +AA+ W
Sbjct: 404 LLTSFSALGLELWSMTSDIYFDNFIICSEKEVADHWAADGW 444
>sp|Q39817|CALX_SOYBN Calnexin homolog precursor
Length = 546
Score = 216 bits (550), Expect = 5e-56
Identities = 94/169 (55%), Positives = 121/169 (71%)
Frame = +3
Query: 6 DPDAVKPGDWDDSAPEYIEDEKAVKPDGWLENEPLTVPDEKSEKPKDWDDEMDGEWEAPR 185
DP AVKP DWD+ AP I DE+A KP+GWL++EP + D ++ KP+DWDDE DGEWEAP+
Sbjct: 251 DPSAVKPDDWDEDAPMEILDEEAEKPEGWLDDEPEEIDDPEATKPEDWDDEEDGEWEAPK 310
Query: 186 IDNPLCKDAPGCGPWKSPKIKNPNYKGVWTAPMIDNPKYKGVWKARRIANADYFEDAQPY 365
I+NP C+ APGCG WK P +NP YKG W+AP IDNP YKG+WK R I N +YFE A+P
Sbjct: 311 IENPKCEAAPGCGEWKRPTKRNPAYKGKWSAPYIDNPSYKGIWKpreIPNPEYFELAKP- 369
Query: 366 KMTPIGAIGLELWSMSDEIVFDNFIIVDNKKAADDFAAETWVVKKDAER 512
PI AIG+E+W+M D I+FDN +I ++ K A+ + TW K E+
Sbjct: 370 DFEPIAAIGIEIWTMQDGILFDNVLIANDDKVAESYRETTWKPKFTVEK 418
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,128,235
Number of Sequences: 369166
Number of extensions: 1805961
Number of successful extensions: 5340
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4953
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7115329200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)