Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_O19
(704 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P31009|RS2_DROME 40S ribosomal protein S2 (Strings of pe... 342 7e-94
sp|P49154|RS2_URECA 40S ribosomal protein S2 334 2e-91
sp|P15880|RS2_HUMAN 40S ribosomal protein S2 (S4) (LLRep3 p... 323 2e-88
sp|P27952|RS2_RAT 40S ribosomal protein S2 >gi|46397787|sp|... 323 3e-88
sp|Q90YS3|RS2_ICTPU 40S ribosomal protein S2 323 4e-88
sp|O18789|RS2_BOVIN 40S ribosomal protein S2 321 1e-87
sp|P51403|RS2_CAEEL 40S ribosomal protein S2 315 1e-85
sp|O74892|RS2_SCHPO 40S ribosomal protein S2 306 3e-83
sp|P46791|RS2_CRIGR 40S ribosomal protein S2 306 3e-83
sp|P49688|RS2_ARATH 40S ribosomal protein S2 299 6e-81
>sp|P31009|RS2_DROME 40S ribosomal protein S2 (Strings of pearls protein)
Length = 267
Score = 342 bits (876), Expect = 7e-94
Identities = 167/222 (75%), Positives = 188/222 (84%), Gaps = 1/222 (0%)
Frame = +1
Query: 1 RGEKDSKEWEPCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFL-PELKDEVLSIKP 177
RG++DSKEW P TKLGRLV+ GK+K+LEEIY+YS+PIKE EIID+FL LKDEVL I P
Sbjct: 35 RGKEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMP 94
Query: 178 VQKQTRAGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLSVIPVRKGYWG 357
VQKQTRAGQRTRFKA VA+GDNNGH+GLGVKC+KEVATAIRGAI AKLSV+PVR+GYWG
Sbjct: 95 VQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWG 154
Query: 358 NKLGDTHTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQDVYTSANGQTA 537
NK+G HTVPCKVTGKCGSVSVRLIPAPRGTGIV APV KKLL+MAGI+D YTSA G T
Sbjct: 155 NKIGKPHTVPCKVTGKCGSVSVRLIPAPRGTGIVSAPVPKKLLTMAGIEDCYTSARGSTG 214
Query: 538 TLENFAKATYMAIRRTYEYLSPDLWNATPNTQNPFDEHAKFL 663
TL NFAKATY AI +TY YL+PDLW P P+ ++ FL
Sbjct: 215 TLGNFAKATYAAIAKTYAYLTPDLWKEMPLGSTPYQAYSDFL 256
>sp|P49154|RS2_URECA 40S ribosomal protein S2
Length = 278
Score = 334 bits (856), Expect = 2e-91
Identities = 169/223 (75%), Positives = 187/223 (83%), Gaps = 2/223 (0%)
Frame = +1
Query: 1 RGEKDS-KEWEPCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFLPE-LKDEVLSIK 174
RG KD KEW P TKLGRLVK K+KTLEEIY++S+PIKE EIID+FL + LKDEVL I
Sbjct: 37 RGAKDGDKEWVPVTKLGRLVKDMKIKTLEEIYLFSLPIKEFEIIDFFLGDALKDEVLKIM 96
Query: 175 PVQKQTRAGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLSVIPVRKGYW 354
PVQKQTRAGQRTRFKA VA+GD NGHVGLGVKC+KEVATAIRGAI AKLSV+PVR+GYW
Sbjct: 97 PVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYW 156
Query: 355 GNKLGDTHTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQDVYTSANGQT 534
GNK+G HTVPCKVTGKCGSV VRLIPAPRGTGIV APV KKLL+MAGI D YTSA GQT
Sbjct: 157 GNKIGKPHTVPCKVTGKCGSVLVRLIPAPRGTGIVSAPVPKKLLAMAGIDDCYTSARGQT 216
Query: 535 ATLENFAKATYMAIRRTYEYLSPDLWNATPNTQNPFDEHAKFL 663
ATL NFAKATY AI TY YL+PDLW T T++P+ E+ +L
Sbjct: 217 ATLGNFAKATYAAIAATYSYLTPDLWRETVFTKSPYQEYTDYL 259
>sp|P15880|RS2_HUMAN 40S ribosomal protein S2 (S4) (LLRep3 protein)
Length = 293
Score = 323 bits (829), Expect = 2e-88
Identities = 161/221 (72%), Positives = 183/221 (82%), Gaps = 1/221 (0%)
Frame = +1
Query: 4 GEKDSKEWEPCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFL-PELKDEVLSIKPV 180
G+ + KEW P TKLGRLVK K+K+LEEIY++S+PIKE+EIID+FL LKDEVL I PV
Sbjct: 53 GKAEDKEWMPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPV 112
Query: 181 QKQTRAGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLSVIPVRKGYWGN 360
QKQTRAGQRTRFKA VA+GD NGHVGLGVKC+KEVATAIRGAI AKLS++PVR+GYWGN
Sbjct: 113 QKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGN 172
Query: 361 KLGDTHTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQDVYTSANGQTAT 540
K+G HTVPCKVTG+CGSV VRLIPAPRGTGIV APV KKLL MAGI D YTSA G TAT
Sbjct: 173 KIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTAT 232
Query: 541 LENFAKATYMAIRRTYEYLSPDLWNATPNTQNPFDEHAKFL 663
L NFAKAT+ AI +TY YL+PDLW T T++P+ E L
Sbjct: 233 LGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHL 273
>sp|P27952|RS2_RAT 40S ribosomal protein S2
sp|P25444|RS2_MOUSE 40S ribosomal protein S2 (S4) (LLRep3 protein)
Length = 293
Score = 323 bits (828), Expect = 3e-88
Identities = 161/221 (72%), Positives = 183/221 (82%), Gaps = 1/221 (0%)
Frame = +1
Query: 4 GEKDSKEWEPCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFL-PELKDEVLSIKPV 180
G+ + KEW P TKLGRLVK K+K+LEEIY++S+PIKE+EIID+FL LKDEVL I PV
Sbjct: 53 GKAEDKEWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPV 112
Query: 181 QKQTRAGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLSVIPVRKGYWGN 360
QKQTRAGQRTRFKA VA+GD NGHVGLGVKC+KEVATAIRGAI AKLS++PVR+GYWGN
Sbjct: 113 QKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGN 172
Query: 361 KLGDTHTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQDVYTSANGQTAT 540
K+G HTVPCKVTG+CGSV VRLIPAPRGTGIV APV KKLL MAGI D YTSA G TAT
Sbjct: 173 KIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTAT 232
Query: 541 LENFAKATYMAIRRTYEYLSPDLWNATPNTQNPFDEHAKFL 663
L NFAKAT+ AI +TY YL+PDLW T T++P+ E L
Sbjct: 233 LGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHL 273
>sp|Q90YS3|RS2_ICTPU 40S ribosomal protein S2
Length = 277
Score = 323 bits (827), Expect = 4e-88
Identities = 162/218 (74%), Positives = 181/218 (83%), Gaps = 1/218 (0%)
Frame = +1
Query: 13 DSKEWEPCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFLPE-LKDEVLSIKPVQKQ 189
+ KEW P TKLGRLVK K+K+LEEIY+YS+PIKE+EIID+FL LKDEVL I PVQKQ
Sbjct: 41 EDKEWVPVTKLGRLVKDMKIKSLEEIYLYSLPIKESEIIDFFLGSALKDEVLKIMPVQKQ 100
Query: 190 TRAGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLSVIPVRKGYWGNKLG 369
TRAGQRTRFKA VA+GD NGHVGLGVKC+KEVATAIRGAI AKLS+IPVR+GYWGNK+G
Sbjct: 101 TRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIIPVRRGYWGNKIG 160
Query: 370 DTHTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQDVYTSANGQTATLEN 549
HTVPCKVTG+CGSV VRLIPAPRGTGIV APV KKLL MAGI D YTSA G TATL N
Sbjct: 161 KPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGN 220
Query: 550 FAKATYMAIRRTYEYLSPDLWNATPNTQNPFDEHAKFL 663
FAKAT+ AI +TY YL+PDLW T T++P+ E L
Sbjct: 221 FAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHL 258
>sp|O18789|RS2_BOVIN 40S ribosomal protein S2
Length = 286
Score = 321 bits (823), Expect = 1e-87
Identities = 160/221 (72%), Positives = 182/221 (82%), Gaps = 1/221 (0%)
Frame = +1
Query: 4 GEKDSKEWEPCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFL-PELKDEVLSIKPV 180
G+ + KEW P TKLGRLVK K+K+LEEIY++S+PIKE+EIID+FL LKDEVL I PV
Sbjct: 46 GKAEDKEWLPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPV 105
Query: 181 QKQTRAGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLSVIPVRKGYWGN 360
QKQTRAGQRTRFKA VA+GD NGHVGLGVKC+KEVATAIRGAI AKLS++PVR+GYWGN
Sbjct: 106 QKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGN 165
Query: 361 KLGDTHTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQDVYTSANGQTAT 540
K+G HTVPCKVTG+CGSV VRLIP PRGTGIV APV KKLL MAGI D YTSA G TAT
Sbjct: 166 KIGKPHTVPCKVTGRCGSVLVRLIPPPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTAT 225
Query: 541 LENFAKATYMAIRRTYEYLSPDLWNATPNTQNPFDEHAKFL 663
L NFAKAT+ AI +TY YL+PDLW T T++P+ E L
Sbjct: 226 LGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHL 266
>sp|P51403|RS2_CAEEL 40S ribosomal protein S2
Length = 272
Score = 315 bits (806), Expect = 1e-85
Identities = 155/221 (70%), Positives = 176/221 (79%)
Frame = +1
Query: 1 RGEKDSKEWEPCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFLPELKDEVLSIKPV 180
RG + EW P TKLGRLVK K+ TLEEIY+ S+PIKE EIID LKDEVL I PV
Sbjct: 49 RGGEKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIKEFEIIDALCSNLKDEVLKISPV 108
Query: 181 QKQTRAGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLSVIPVRKGYWGN 360
QKQT AGQRTRFKA VA+GD+ GHVGLGVKC+KEVATAIRGAI AKL+V+PVR+GYWGN
Sbjct: 109 QKQTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVATAIRGAIVAAKLAVVPVRRGYWGN 168
Query: 361 KLGDTHTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQDVYTSANGQTAT 540
K+G HTVPCKVTGKC SV VRLIPAPRGTGIV APV KKLL MAGI+D YT+A G TAT
Sbjct: 169 KIGLPHTVPCKVTGKCASVMVRLIPAPRGTGIVSAPVPKKLLHMAGIEDCYTAAKGSTAT 228
Query: 541 LENFAKATYMAIRRTYEYLSPDLWNATPNTQNPFDEHAKFL 663
L NFAKATY A++RTY YL+PDLW ++P+ H ++L
Sbjct: 229 LGNFAKATYAALQRTYSYLTPDLWKEEALEKSPYQRHHEYL 269
>sp|O74892|RS2_SCHPO 40S ribosomal protein S2
Length = 253
Score = 306 bits (785), Expect = 3e-83
Identities = 145/223 (65%), Positives = 176/223 (78%), Gaps = 2/223 (0%)
Frame = +1
Query: 1 RGEK--DSKEWEPCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFLPELKDEVLSIK 174
RG K + KEW P TKLGRLVKAGK+K++EEIY+YS+PIKE +I+DYFLP L DEV+ +
Sbjct: 24 RGAKRDEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKEYQIVDYFLPRLNDEVMKVV 83
Query: 175 PVQKQTRAGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLSVIPVRKGYW 354
PVQKQTRAGQRTRFKA V +GD++GHVGLG+KCAKEVATAIRGAI KLS++P+R+GYW
Sbjct: 84 PVQKQTRAGQRTRFKAFVVIGDSDGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRRGYW 143
Query: 355 GNKLGDTHTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQDVYTSANGQT 534
G LGD HTVP KV+GKCGSV+VRL+PAPRG G+V APVTK+ L +AGI+D YT + G T
Sbjct: 144 GTALGDPHTVPVKVSGKCGSVTVRLVPAPRGAGLVAAPVTKRFLQLAGIEDCYTQSRGST 203
Query: 535 ATLENFAKATYMAIRRTYEYLSPDLWNATPNTQNPFDEHAKFL 663
TL NF KA + A TY L+P+LW P Q P +E+A L
Sbjct: 204 KTLGNFVKAAFAAASLTYGILTPNLWAERPFGQTPIEEYADIL 246
>sp|P46791|RS2_CRIGR 40S ribosomal protein S2
Length = 202
Score = 306 bits (784), Expect = 3e-83
Identities = 153/198 (77%), Positives = 170/198 (85%), Gaps = 1/198 (0%)
Frame = +1
Query: 31 PCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFL-PELKDEVLSIKPVQKQTRAGQR 207
P TKLGRLVK K+K+LEEIY++S+PIKE+EIID+FL LKDEVL I PVQKQTRAGQR
Sbjct: 2 PVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQR 61
Query: 208 TRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLSVIPVRKGYWGNKLGDTHTVP 387
TRFKA VA+GD NGHVGLGVKC+KEVATAIRGAI AKLS++PVR+GYWGNK+G HTVP
Sbjct: 62 TRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVP 121
Query: 388 CKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQDVYTSANGQTATLENFAKATY 567
CKVTG+CGSV VRLIPAPRGTGIV APV KKLL MAGI D YTSA G TATL NFAKAT+
Sbjct: 122 CKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATF 181
Query: 568 MAIRRTYEYLSPDLWNAT 621
AI +TY YL+PDLW T
Sbjct: 182 DAISKTYSYLTPDLWKET 199
>sp|P49688|RS2_ARATH 40S ribosomal protein S2
Length = 285
Score = 299 bits (765), Expect = 6e-81
Identities = 144/224 (64%), Positives = 179/224 (79%), Gaps = 3/224 (1%)
Frame = +1
Query: 1 RGEKDSKE--WEPCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFL-PELKDEVLSI 171
RG + S+E W P TKLGRLV AG +K +E+IY++S+P+KE +IID + P LKDEV+ I
Sbjct: 44 RGGRASEEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKI 103
Query: 172 KPVQKQTRAGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLSVIPVRKGY 351
PVQKQTRAGQRTRFKA V +GD NGHVGLGVKC+KEVATAIRGAI AKLSV+PVR+GY
Sbjct: 104 MPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGY 163
Query: 352 WGNKLGDTHTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQDVYTSANGQ 531
WGNK+G HTVPCKVTGKCGSV+VR++PAPRG+GIV A V KK+L AGI DV+TS+ G
Sbjct: 164 WGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGS 223
Query: 532 TATLENFAKATYMAIRRTYEYLSPDLWNATPNTQNPFDEHAKFL 663
T TL NF KAT+ +++TY +L+P+ W T +++P+ EH FL
Sbjct: 224 TKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQEHTDFL 267
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,614,655
Number of Sequences: 369166
Number of extensions: 1594226
Number of successful extensions: 4420
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4262
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6170718545
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)