Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_O17
(346 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P59282|P25B_HUMAN Protein p25-beta 72 5e-13
sp|Q9CRB6|CG38_MOUSE Protein CGI-38 homolog 69 3e-12
sp|Q9BW30|CG38_HUMAN Protein CGI-38 69 3e-12
sp|Q7TQD2|P25A_MOUSE Tubulin polymerization-promoting prote... 65 5e-11
sp|O94811|P25A_HUMAN Tubulin polymerization-promoting prote... 64 1e-10
sp|Q27957|P25A_BOVIN Tubulin polymerization-promoting prote... 62 3e-10
sp|P91127|YBYK_CAEEL Hypothetical protein C32E8.3 in chromo... 62 5e-10
sp|Q9VV43|Y4893_DROME Hypothetical protein CG4893 60 1e-09
sp|P10611|CP4A4_RABIT Cytochrome P450 4A4 precursor (CYPIVA... 30 2.3
sp|P30674|PRTP_MCMVS Probable processing and transport prot... 29 3.8
>sp|P59282|P25B_HUMAN Protein p25-beta
Length = 170
Score = 71.6 bits (174), Expect = 5e-13
Identities = 38/66 (57%), Positives = 42/66 (63%)
Frame = +2
Query: 11 GTTGVSADAATARLTDVKGYTGAHKERFDAETGKGKGIDGREYLAGENAQQGYVGGYKGA 190
G T + A RLTD YTG HKE FD E+GKGKGI GRE + GYV GYKG+
Sbjct: 107 GATKATTVGAVDRLTDTSKYTGTHKELFD-ESGKGKGIAGREEMTDNT---GYVSGYKGS 162
Query: 191 GTYDKK 208
GTYDKK
Sbjct: 163 GTYDKK 168
>sp|Q9CRB6|CG38_MOUSE Protein CGI-38 homolog
Length = 176
Score = 69.3 bits (168), Expect = 3e-12
Identities = 36/67 (53%), Positives = 43/67 (64%)
Frame = +2
Query: 8 LGTTGVSADAATARLTDVKGYTGAHKERFDAETGKGKGIDGREYLAGENAQQGYVGGYKG 187
+G T A RLTD YTG+HKERFD E+GKGKGI GR+ + ++ GYV YK
Sbjct: 111 IGVTKAKTGGAVDRLTDTSKYTGSHKERFD-ESGKGKGIAGRQDILDDS---GYVSAYKN 166
Query: 188 AGTYDKK 208
AGTYD K
Sbjct: 167 AGTYDAK 173
>sp|Q9BW30|CG38_HUMAN Protein CGI-38
Length = 176
Score = 68.9 bits (167), Expect = 3e-12
Identities = 36/67 (53%), Positives = 43/67 (64%)
Frame = +2
Query: 8 LGTTGVSADAATARLTDVKGYTGAHKERFDAETGKGKGIDGREYLAGENAQQGYVGGYKG 187
+G T A RLTD YTG+HKERFD E+GKGKGI GR+ + ++ GYV YK
Sbjct: 111 VGVTKAKTGGAVDRLTDTSRYTGSHKERFD-ESGKGKGIAGRQDILDDS---GYVSAYKN 166
Query: 188 AGTYDKK 208
AGTYD K
Sbjct: 167 AGTYDAK 173
>sp|Q7TQD2|P25A_MOUSE Tubulin polymerization-promoting protein (TPPP)
Length = 218
Score = 65.1 bits (157), Expect = 5e-11
Identities = 36/69 (52%), Positives = 44/69 (63%)
Frame = +2
Query: 2 VALGTTGVSADAATARLTDVKGYTGAHKERFDAETGKGKGIDGREYLAGENAQQGYVGGY 181
V G T + +RLTD +TG+HKERFD ++GKGKG GR L E+ GYV GY
Sbjct: 149 VISGVTKAVSSPTVSRLTDTSKFTGSHKERFD-QSGKGKGKAGRVDLVDES---GYVPGY 204
Query: 182 KGAGTYDKK 208
K AGTYD+K
Sbjct: 205 KHAGTYDQK 213
>sp|O94811|P25A_HUMAN Tubulin polymerization-promoting protein (TPPP) (25 kDa
brain-specific protein) (p25-alpha) (p24) (p25)
Length = 219
Score = 63.9 bits (154), Expect = 1e-10
Identities = 35/66 (53%), Positives = 42/66 (63%)
Frame = +2
Query: 11 GTTGVSADAATARLTDVKGYTGAHKERFDAETGKGKGIDGREYLAGENAQQGYVGGYKGA 190
G T + +RLTD +TG+HKERFD +GKGKG GR L E+ GYV GYK A
Sbjct: 153 GVTKAISSPTVSRLTDTTKFTGSHKERFD-PSGKGKGKAGRVDLVDES---GYVSGYKHA 208
Query: 191 GTYDKK 208
GTYD+K
Sbjct: 209 GTYDQK 214
>sp|Q27957|P25A_BOVIN Tubulin polymerization-promoting protein (TPPP) (25 kDa
brain-specific protein) (p25-alpha)
Length = 218
Score = 62.4 bits (150), Expect = 3e-10
Identities = 34/66 (51%), Positives = 42/66 (63%)
Frame = +2
Query: 11 GTTGVSADAATARLTDVKGYTGAHKERFDAETGKGKGIDGREYLAGENAQQGYVGGYKGA 190
G T + +RLTD +TG+HKERFD +G+GKG GR L E+ GYV GYK A
Sbjct: 152 GVTKAISSPTVSRLTDTSKFTGSHKERFD-PSGRGKGRAGRVDLVDES---GYVPGYKHA 207
Query: 191 GTYDKK 208
GTYD+K
Sbjct: 208 GTYDQK 213
>sp|P91127|YBYK_CAEEL Hypothetical protein C32E8.3 in chromosome I
Length = 180
Score = 61.6 bits (148), Expect = 5e-10
Identities = 35/65 (53%), Positives = 38/65 (58%)
Frame = +2
Query: 11 GTTGVSADAATARLTDVKGYTGAHKERFDAETGKGKGIDGREYLAGENAQQGYVGGYKGA 190
G +A +RLTD YTGAHKERFDAE GKGKG GR A GYVG YK
Sbjct: 116 GAAKANAAGVYSRLTDHTKYTGAHKERFDAE-GKGKGKSGR---ADTTENTGYVGAYKNK 171
Query: 191 GTYDK 205
+YDK
Sbjct: 172 DSYDK 176
>sp|Q9VV43|Y4893_DROME Hypothetical protein CG4893
Length = 192
Score = 60.5 bits (145), Expect = 1e-09
Identities = 37/69 (53%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Frame = +2
Query: 5 ALGTTGVSADAATA---RLTDVKGYTGAHKERFDAETGKGKGIDGREYLAGENAQQGYVG 175
A G VSA A A RLTD YTG+HKERFDA +GKGKGI GR + + GYV
Sbjct: 125 APGVVSVSAGKAAAAVDRLTDTSKYTGSHKERFDA-SGKGKGIAGRRNVVDGS---GYVS 180
Query: 176 GYKGAGTYD 202
GY+ TYD
Sbjct: 181 GYQHKDTYD 189
>sp|P10611|CP4A4_RABIT Cytochrome P450 4A4 precursor (CYPIVA4) (Prostaglandin
omega-hydroxylase) (P450-P-2)
Length = 510
Score = 29.6 bits (65), Expect = 2.3
Identities = 19/63 (30%), Positives = 32/63 (50%)
Frame = -3
Query: 194 FLHLCNHQHNLVAHFPRRDILYHQYLYLYRFLHQIVLYVHQCNL*HLSNEQSPHQQKLRL 15
++ N +NLV F R ++HQ +LYR + L+ C L H ++ Q+K +L
Sbjct: 217 YIQAINDLNNLV--FYRARNVFHQSDFLYRLSPEGRLFHRACQLAHEHTDRVIQQRKAQL 274
Query: 14 YRE 6
+E
Sbjct: 275 QQE 277
>sp|P30674|PRTP_MCMVS Probable processing and transport protein (Infected cell protein
18.5)
Length = 798
Score = 28.9 bits (63), Expect = 3.8
Identities = 18/41 (43%), Positives = 23/41 (56%)
Frame = +2
Query: 74 GAHKERFDAETGKGKGIDGREYLAGENAQQGYVGGYKGAGT 196
GA + R +A +G G G E AG A +G GG +GAGT
Sbjct: 418 GAARSRAEAASGAGAG---GEEGAGAAAGRGNTGGDEGAGT 455
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,619,728
Number of Sequences: 369166
Number of extensions: 569906
Number of successful extensions: 1591
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1578
length of database: 68,354,980
effective HSP length: 82
effective length of database: 53,206,710
effective search space used: 1702614720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)