Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_O15-1
(278 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P47030|YJI3_YEAST Hypothetical 68.8 kDa protein in EXO70... 30 1.3
sp|P17758|VIF_HV2D1 Virion infectivity factor (Vif) (SOR pr... 30 1.3
sp|Q99944|EGFL8_HUMAN Multiple EGF-like-domain protein 8 pr... 30 2.3
sp|P18097|VIF_HV2BE Virion infectivity factor (Vif) (SOR pr... 29 2.9
sp|P05903|VIF_SIVM1 Virion infectivity factor (Vif) (SOR pr... 29 2.9
sp|Q74121|VIF_HV2KR Virion infectivity factor (Vif) (SOR pr... 29 2.9
sp|P20878|VIF_HV2ST Virion infectivity factor (Vif) (SOR pr... 29 3.9
sp|P19506|VIF_SIVSP Virion infectivity factor (Vif) (SOR pr... 29 3.9
sp|P04595|VIF_HV2RO Virion infectivity factor (Vif) (SOR pr... 29 3.9
sp|Q9IA19|HXA1_HETFR Homeobox protein Hox-A1 29 3.9
>sp|P47030|YJI3_YEAST Hypothetical 68.8 kDa protein in EXO70-ARP4 intergenic region
Length = 604
Score = 30.4 bits (67), Expect = 1.3
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Frame = +1
Query: 163 KNNNNNDKRSYQHDAYSTGSST----FPHHHHHQSTL 261
K+ + K+ + A GSST FPHHHHH L
Sbjct: 369 KSRRSKIKKGLKTTAAVVGSSTSVLPFPHHHHHHHQL 405
>sp|P17758|VIF_HV2D1 Virion infectivity factor (Vif) (SOR protein) (Q protein)
Length = 215
Score = 30.4 bits (67), Expect = 1.3
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -1
Query: 263 HSVDWWWWWCGNVLLPVE 210
H V W WW C V+ P+E
Sbjct: 45 HKVGWAWWTCSRVIFPLE 62
>sp|Q99944|EGFL8_HUMAN Multiple EGF-like-domain protein 8 precursor (Vascular
endothelial-statin 2) (VE-statin-2)
Length = 293
Score = 29.6 bits (65), Expect = 2.3
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -2
Query: 226 CCCPWSKRHVGRISCRCCC 170
CC W KRH G ++C C
Sbjct: 96 CCQGWKKRHPGALTCEAIC 114
>sp|P18097|VIF_HV2BE Virion infectivity factor (Vif) (SOR protein) (Q protein)
Length = 215
Score = 29.3 bits (64), Expect = 2.9
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -1
Query: 263 HSVDWWWWWCGNVLLPVE 210
H V W WW C V+ P++
Sbjct: 45 HKVGWAWWTCSRVIFPLQ 62
>sp|P05903|VIF_SIVM1 Virion infectivity factor (Vif) (SOR protein) (Q protein)
Length = 214
Score = 29.3 bits (64), Expect = 2.9
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -1
Query: 263 HSVDWWWWWCGNVLLPVE 210
H V W WW C V+ P++
Sbjct: 45 HKVGWAWWTCSRVIFPLQ 62
>sp|Q74121|VIF_HV2KR Virion infectivity factor (Vif) (SOR protein) (Q protein)
Length = 215
Score = 29.3 bits (64), Expect = 2.9
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -1
Query: 263 HSVDWWWWWCGNVLLPVE 210
H V W WW C V+ P++
Sbjct: 45 HKVGWAWWTCSRVIFPLQ 62
>sp|P20878|VIF_HV2ST Virion infectivity factor (Vif) (SOR protein) (Q protein)
Length = 215
Score = 28.9 bits (63), Expect = 3.9
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -1
Query: 263 HSVDWWWWWCGNVLLPVE 210
H V W WW C V+ P++
Sbjct: 45 HKVGWAWWTCSRVIFPLK 62
>sp|P19506|VIF_SIVSP Virion infectivity factor (Vif) (SOR protein) (Q protein)
Length = 214
Score = 28.9 bits (63), Expect = 3.9
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -1
Query: 263 HSVDWWWWWCGNVLLPVE 210
H V W WW C V+ P++
Sbjct: 45 HKVGWAWWTCSRVIFPLK 62
>sp|P04595|VIF_HV2RO Virion infectivity factor (Vif) (SOR protein) (Q protein)
Length = 215
Score = 28.9 bits (63), Expect = 3.9
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -1
Query: 263 HSVDWWWWWCGNVLLPVE 210
H V W WW C V+ P++
Sbjct: 45 HKVGWAWWTCSRVIFPLK 62
>sp|Q9IA19|HXA1_HETFR Homeobox protein Hox-A1
Length = 326
Score = 28.9 bits (63), Expect = 3.9
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +1
Query: 166 NNNNNDKRSYQHDAYSTGSSTFPHHHHHQS 255
NN N D R + G+ PHHHHHQS
Sbjct: 44 NNCNADDRYIVSRSVQIGAPP-PHHHHHQS 72
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.317 0.129 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,073,417
Number of Sequences: 369166
Number of extensions: 227572
Number of successful extensions: 1801
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1711
length of database: 68,354,980
effective HSP length: 62
effective length of database: 56,901,410
effective search space used: 1707042300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)