Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_O13
(669 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P62919|RL8_RAT 60S ribosomal protein L8 >gi|51702824|sp|... 340 3e-93
sp|P41116|RL8_XENLA 60S ribosomal protein L8 338 6e-93
sp|Q6PBF0|RL8_XENTR 60S ribosomal protein L8 338 6e-93
sp|Q5R7Y8|RL8_PONPY 60S ribosomal protein L8 338 8e-93
sp|Q6P0V6|RL8_BRARE 60S ribosomal protein L8 338 1e-92
sp|Q90YW1|RL8_ICTPU 60S ribosomal protein L8 332 4e-91
sp|Q95V39|RL8_SPOFR 60S ribosomal protein L8 >gi|51701882|s... 323 3e-88
sp|Q9V3G1|RL8_DROME 60S ribosomal protein L8 323 3e-88
sp|Q9XVF7|RL8_CAEEL 60S ribosomal protein L8 323 3e-88
sp|P41569|RL8_AEDAL 60S ribosomal protein L8 323 3e-88
>sp|P62919|RL8_RAT 60S ribosomal protein L8
sp|P62918|RL8_MOUSE 60S ribosomal protein L8
sp|P62917|RL8_HUMAN 60S ribosomal protein L8
Length = 257
Score = 340 bits (871), Expect = 3e-93
Identities = 155/210 (73%), Positives = 186/210 (88%)
Frame = +2
Query: 2 IVRDIIHDPGRGAPLAKVEFKDPYKYKKVMQTFIAAEGMSTGQFVYCGKKAKINVGNVLP 181
IV+DIIHDPGRGAPLAKV F+DPY++KK + FIAAEG+ TGQFVYCGKKA++N+GNVLP
Sbjct: 44 IVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLP 103
Query: 182 IKSIPEGTVICNLEEKSGDRGRIARASGNSAIIVSHNSETNKTRVKLPSGQKKLLSSSCR 361
+ ++PEGT++C LEEK GDRG++ARASGN A ++SHN ET KTRVKLPSG KK++SS+ R
Sbjct: 104 VGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANR 163
Query: 362 AMIGIVAGGGRIEKPMLKAGRAYHKYKAKRNCWPRVRGVCMNPVDHPHGGGNHQHIGTPS 541
A++G+VAGGGRI+KP+LKAGRAYHKYKAKRNCWPRVRGV MNPV+HP GGGNHQHIG PS
Sbjct: 164 AVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPS 223
Query: 542 TVSRHTVPGRKVGLVAARRTGLLRGTKVIK 631
T+ R GRKVGL+AARRTG LRGTK ++
Sbjct: 224 TIRRDAPAGRKVGLIAARRTGRLRGTKTVQ 253
>sp|P41116|RL8_XENLA 60S ribosomal protein L8
Length = 257
Score = 338 bits (868), Expect = 6e-93
Identities = 153/210 (72%), Positives = 186/210 (88%)
Frame = +2
Query: 2 IVRDIIHDPGRGAPLAKVEFKDPYKYKKVMQTFIAAEGMSTGQFVYCGKKAKINVGNVLP 181
IV+DIIHDPGRGAPLAKV F+DPY++KK + F+AAEG+ TGQFVYCGKKA++N+GNVLP
Sbjct: 44 IVKDIIHDPGRGAPLAKVAFRDPYRFKKRTELFVAAEGIHTGQFVYCGKKAQLNIGNVLP 103
Query: 182 IKSIPEGTVICNLEEKSGDRGRIARASGNSAIIVSHNSETNKTRVKLPSGQKKLLSSSCR 361
+ ++PEGT++C +EEK GDRG++ARASGN A ++SHN ET KTRVKLPSG KK++SS+ R
Sbjct: 104 VGTMPEGTIVCCVEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANR 163
Query: 362 AMIGIVAGGGRIEKPMLKAGRAYHKYKAKRNCWPRVRGVCMNPVDHPHGGGNHQHIGTPS 541
A++G+VAGGGRI+KP+LKAGRAYHKYKAKRNCWPRVRGV MNPV+HP GGGNHQHIG PS
Sbjct: 164 AIVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPS 223
Query: 542 TVSRHTVPGRKVGLVAARRTGLLRGTKVIK 631
T+ R GRKVGL+AARRTG LRGTK ++
Sbjct: 224 TIRRDAPAGRKVGLIAARRTGRLRGTKTVQ 253
>sp|Q6PBF0|RL8_XENTR 60S ribosomal protein L8
Length = 257
Score = 338 bits (868), Expect = 6e-93
Identities = 153/210 (72%), Positives = 186/210 (88%)
Frame = +2
Query: 2 IVRDIIHDPGRGAPLAKVEFKDPYKYKKVMQTFIAAEGMSTGQFVYCGKKAKINVGNVLP 181
IV+DIIHDPGRGAPLAKV F+DPY++KK + F+AAEG+ TGQFVYCGKKA++N+GNVLP
Sbjct: 44 IVKDIIHDPGRGAPLAKVAFRDPYRFKKRTELFVAAEGIHTGQFVYCGKKAQLNIGNVLP 103
Query: 182 IKSIPEGTVICNLEEKSGDRGRIARASGNSAIIVSHNSETNKTRVKLPSGQKKLLSSSCR 361
+ ++PEGT++C +EEK GDRG++ARASGN A ++SHN ET KTRVKLPSG KK++SS+ R
Sbjct: 104 VGTMPEGTIVCCVEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANR 163
Query: 362 AMIGIVAGGGRIEKPMLKAGRAYHKYKAKRNCWPRVRGVCMNPVDHPHGGGNHQHIGTPS 541
A++G+VAGGGRI+KP+LKAGRAYHKYKAKRNCWPRVRGV MNPV+HP GGGNHQHIG PS
Sbjct: 164 AIVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPS 223
Query: 542 TVSRHTVPGRKVGLVAARRTGLLRGTKVIK 631
T+ R GRKVGL+AARRTG LRGTK ++
Sbjct: 224 TIRRDAPAGRKVGLIAARRTGRLRGTKTVQ 253
>sp|Q5R7Y8|RL8_PONPY 60S ribosomal protein L8
Length = 257
Score = 338 bits (867), Expect = 8e-93
Identities = 154/210 (73%), Positives = 185/210 (88%)
Frame = +2
Query: 2 IVRDIIHDPGRGAPLAKVEFKDPYKYKKVMQTFIAAEGMSTGQFVYCGKKAKINVGNVLP 181
IV+DIIHDPGRGAPLAKV F+DPY++KK + FIAAEG+ TGQFVYCGKKA++N+GNVLP
Sbjct: 44 IVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLP 103
Query: 182 IKSIPEGTVICNLEEKSGDRGRIARASGNSAIIVSHNSETNKTRVKLPSGQKKLLSSSCR 361
+ ++PEGT++C LEEK GDRG++ARASGN A ++SHN ET KTRVKLPSG KK++SS+ R
Sbjct: 104 VGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANR 163
Query: 362 AMIGIVAGGGRIEKPMLKAGRAYHKYKAKRNCWPRVRGVCMNPVDHPHGGGNHQHIGTPS 541
A++G+VAGGGRI+KP+LKAGRAYHKYKAKRNCWPRVRGV MNPV+HP GGGNHQHIG PS
Sbjct: 164 AVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPS 223
Query: 542 TVSRHTVPGRKVGLVAARRTGLLRGTKVIK 631
T+ R GRKVGL+A RRTG LRGTK ++
Sbjct: 224 TIRRDAPAGRKVGLIAVRRTGRLRGTKTVQ 253
>sp|Q6P0V6|RL8_BRARE 60S ribosomal protein L8
Length = 257
Score = 338 bits (866), Expect = 1e-92
Identities = 153/210 (72%), Positives = 186/210 (88%)
Frame = +2
Query: 2 IVRDIIHDPGRGAPLAKVEFKDPYKYKKVMQTFIAAEGMSTGQFVYCGKKAKINVGNVLP 181
IV+DIIHDPGRGAPLAKV F+DPY++KK + FIAAEG+ TGQF+YCGKKA++N+GNVLP
Sbjct: 44 IVKDIIHDPGRGAPLAKVMFRDPYRFKKRTELFIAAEGIHTGQFIYCGKKAQLNIGNVLP 103
Query: 182 IKSIPEGTVICNLEEKSGDRGRIARASGNSAIIVSHNSETNKTRVKLPSGQKKLLSSSCR 361
+ ++PEGT++C LEEK GDRG++ARASGN A ++SHN ET K+RVKLPSG KK++SS+ R
Sbjct: 104 VGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKSRVKLPSGSKKVISSANR 163
Query: 362 AMIGIVAGGGRIEKPMLKAGRAYHKYKAKRNCWPRVRGVCMNPVDHPHGGGNHQHIGTPS 541
A++G+VAGGGRI+KP+LKAGRAYHKYKAKRNCWPRVRGV MNPV+HP GGGNHQHIG PS
Sbjct: 164 AVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPS 223
Query: 542 TVSRHTVPGRKVGLVAARRTGLLRGTKVIK 631
T+ R GRKVGL+AARRTG LRGTK ++
Sbjct: 224 TIRRDAPAGRKVGLIAARRTGRLRGTKTVQ 253
>sp|Q90YW1|RL8_ICTPU 60S ribosomal protein L8
Length = 257
Score = 332 bits (852), Expect = 4e-91
Identities = 152/210 (72%), Positives = 183/210 (87%)
Frame = +2
Query: 2 IVRDIIHDPGRGAPLAKVEFKDPYKYKKVMQTFIAAEGMSTGQFVYCGKKAKINVGNVLP 181
IV+DIIHDPGRG PLAKV F+DPY++KK + FIAAEG+ TGQFV+CGKKA++N+GNVLP
Sbjct: 44 IVKDIIHDPGRGTPLAKVVFRDPYRFKKRTELFIAAEGIHTGQFVFCGKKAQLNIGNVLP 103
Query: 182 IKSIPEGTVICNLEEKSGDRGRIARASGNSAIIVSHNSETNKTRVKLPSGQKKLLSSSCR 361
+ +PEGT+IC LEEK GDRG++ARASGN A ++SHN ET K+RVKLPSG KK++SS+ R
Sbjct: 104 VGVMPEGTIICCLEEKPGDRGKLARASGNYATVISHNPETKKSRVKLPSGAKKVISSTNR 163
Query: 362 AMIGIVAGGGRIEKPMLKAGRAYHKYKAKRNCWPRVRGVCMNPVDHPHGGGNHQHIGTPS 541
A++G+VAGGGRI+KP+LKAGRAYHKYK KRNCWPRVRGV MNPV+HP GGGNHQHIG PS
Sbjct: 164 AVVGVVAGGGRIDKPILKAGRAYHKYKVKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPS 223
Query: 542 TVSRHTVPGRKVGLVAARRTGLLRGTKVIK 631
T+ R GRKVGL+AARRTG LRGTK ++
Sbjct: 224 TIRRDVPAGRKVGLIAARRTGRLRGTKTVQ 253
>sp|Q95V39|RL8_SPOFR 60S ribosomal protein L8
sp|Q6RYS3|RL8_MAMBR 60S ribosomal protein L8
Length = 257
Score = 323 bits (828), Expect = 3e-88
Identities = 149/207 (71%), Positives = 174/207 (84%)
Frame = +2
Query: 2 IVRDIIHDPGRGAPLAKVEFKDPYKYKKVMQTFIAAEGMSTGQFVYCGKKAKINVGNVLP 181
+V+DIIHDPGRGAPLA V F+DPYK+K + FIA EG+ TGQFVYCGKKA + VGNV+P
Sbjct: 44 VVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMP 103
Query: 182 IKSIPEGTVICNLEEKSGDRGRIARASGNSAIIVSHNSETNKTRVKLPSGQKKLLSSSCR 361
+ ++PEGT++CNLEEK GDRGR+ARASGN A ++ HN + +TRVKLPSG KK+L SS R
Sbjct: 104 VGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNR 163
Query: 362 AMIGIVAGGGRIEKPMLKAGRAYHKYKAKRNCWPRVRGVCMNPVDHPHGGGNHQHIGTPS 541
M+GIVAGGGRI+KP+LKAGRAYHKYK KRNCWP VRGV MNPV+HPHGGGNHQHIG S
Sbjct: 164 GMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKAS 223
Query: 542 TVSRHTVPGRKVGLVAARRTGLLRGTK 622
TV R T GRKVGL+AARRTG +RG K
Sbjct: 224 TVKRGTSAGRKVGLIAARRTGRIRGGK 250
>sp|Q9V3G1|RL8_DROME 60S ribosomal protein L8
Length = 256
Score = 323 bits (828), Expect = 3e-88
Identities = 148/207 (71%), Positives = 176/207 (85%)
Frame = +2
Query: 2 IVRDIIHDPGRGAPLAKVEFKDPYKYKKVMQTFIAAEGMSTGQFVYCGKKAKINVGNVLP 181
+V+DIIHDPGRGAPLA V F+DPY+YK + FIA EGM TGQFVYCG+KA + +GNV+P
Sbjct: 44 VVKDIIHDPGRGAPLAVVHFRDPYRYKIRKELFIAPEGMHTGQFVYCGRKATLQIGNVMP 103
Query: 182 IKSIPEGTVICNLEEKSGDRGRIARASGNSAIIVSHNSETNKTRVKLPSGQKKLLSSSCR 361
+ +PEGT+ICNLEEK+GDRGR+AR SGN A +++HN +T KTRVKLPSG KK++ S+ R
Sbjct: 104 LSQMPEGTIICNLEEKTGDRGRLARTSGNYATVIAHNQDTKKTRVKLPSGAKKVVPSANR 163
Query: 362 AMIGIVAGGGRIEKPMLKAGRAYHKYKAKRNCWPRVRGVCMNPVDHPHGGGNHQHIGTPS 541
AM+GIVAGGGRI+KP+LKAGRAYHKYK KRN WP+VRGV MNPV+HPHGGGNHQHIG S
Sbjct: 164 AMVGIVAGGGRIDKPILKAGRAYHKYKVKRNSWPKVRGVAMNPVEHPHGGGNHQHIGKAS 223
Query: 542 TVSRHTVPGRKVGLVAARRTGLLRGTK 622
TV R T GRKVGL+AARRTG +RG K
Sbjct: 224 TVKRGTSAGRKVGLIAARRTGRIRGGK 250
>sp|Q9XVF7|RL8_CAEEL 60S ribosomal protein L8
Length = 260
Score = 323 bits (827), Expect = 3e-88
Identities = 147/214 (68%), Positives = 180/214 (84%)
Frame = +2
Query: 2 IVRDIIHDPGRGAPLAKVEFKDPYKYKKVMQTFIAAEGMSTGQFVYCGKKAKINVGNVLP 181
+V+DIIHDPGRGAPLA + F+DPYKYK V T +AAEGM TGQF++CG KA+I +GN++P
Sbjct: 44 LVKDIIHDPGRGAPLAIIAFRDPYKYKTVKTTVVAAEGMHTGQFIHCGAKAQIQIGNIVP 103
Query: 182 IKSIPEGTVICNLEEKSGDRGRIARASGNSAIIVSHNSETNKTRVKLPSGQKKLLSSSCR 361
+ ++PEGT ICN+E KSGDRG IARASGN A +++HN +T KTR++LPSG KK++ S R
Sbjct: 104 VGTLPEGTTICNVENKSGDRGVIARASGNYATVIAHNPDTKKTRIRLPSGAKKVVQSVNR 163
Query: 362 AMIGIVAGGGRIEKPMLKAGRAYHKYKAKRNCWPRVRGVCMNPVDHPHGGGNHQHIGTPS 541
AMIG+VAGGGR +KP+LKAGR+YHKYKAKRN WPRVRGV MNPV+HPHGGGNHQHIG PS
Sbjct: 164 AMIGLVAGGGRTDKPLLKAGRSYHKYKAKRNSWPRVRGVAMNPVEHPHGGGNHQHIGHPS 223
Query: 542 TVSRHTVPGRKVGLVAARRTGLLRGTKVIKTTKQ 643
TV R G+KVGL+AARRTG +RG K +K TK+
Sbjct: 224 TVRRDASAGKKVGLIAARRTGRIRGGKPVKFTKE 257
>sp|P41569|RL8_AEDAL 60S ribosomal protein L8
Length = 261
Score = 323 bits (827), Expect = 3e-88
Identities = 149/206 (72%), Positives = 176/206 (85%)
Frame = +2
Query: 5 VRDIIHDPGRGAPLAKVEFKDPYKYKKVMQTFIAAEGMSTGQFVYCGKKAKINVGNVLPI 184
V+ IIHDPGRGAPLA V F+DPYK+ Q FIAAEGM TGQFVYCGK+A++ +GNVLPI
Sbjct: 45 VKQIIHDPGRGAPLAVVHFRDPYKFNVRKQLFIAAEGMYTGQFVYCGKRAQLQIGNVLPI 104
Query: 185 KSIPEGTVICNLEEKSGDRGRIARASGNSAIIVSHNSETNKTRVKLPSGQKKLLSSSCRA 364
+PEGT++CNLEEK+GDRG++AR SGN A +++HN +T +TRVKLPSG KK+L S+ RA
Sbjct: 105 GLMPEGTIVCNLEEKTGDRGKLARTSGNYASVIAHNPDTKRTRVKLPSGAKKVLPSANRA 164
Query: 365 MIGIVAGGGRIEKPMLKAGRAYHKYKAKRNCWPRVRGVCMNPVDHPHGGGNHQHIGTPST 544
M+GIVAGGGRI+KP+LKAGRAY KYK KRNCWP+VRGV MNPV+HPHGGGNHQHIG ST
Sbjct: 165 MVGIVAGGGRIDKPILKAGRAYRKYKVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGKAST 224
Query: 545 VSRHTVPGRKVGLVAARRTGLLRGTK 622
V R T PGRKVGL+AARRTG +RG K
Sbjct: 225 VKRGTPPGRKVGLIAARRTGRIRGGK 250
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,957,007
Number of Sequences: 369166
Number of extensions: 1665266
Number of successful extensions: 5007
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4629
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5657676120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)