Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_O11-2
(246 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q08647|YO7T_YEAST Hypothetical pseudouridine synthase YO... 41 0.001
sp|Q96PZ0|Y1897_HUMAN Hypothetical pseudouridine synthase K... 33 0.20
sp|O74343|YH2X_SCHPO Hypothetical pseudouridine synthase C1... 30 1.3
sp|Q96ZT9|APE1_SULTO Probable aminopeptidase 1 29 2.9
sp|Q8N8N7|ZADH1_HUMAN Zinc-binding alcohol dehydrogenase do... 28 8.6
sp|Q03498|VATA_PLAFA Vacuolar ATP synthase catalytic subuni... 28 8.6
sp|Q5R806|ZADH1_PONPY Zinc-binding alcohol dehydrogenase do... 28 8.6
>sp|Q08647|YO7T_YEAST Hypothetical pseudouridine synthase YOR243C
Length = 676
Score = 40.8 bits (94), Expect = 0.001
Identities = 22/61 (36%), Positives = 33/61 (54%)
Frame = +3
Query: 27 EPPRKRLCVENSSVSCNNRYIEVGIEEFFDNIGVGFSGKIKERWEDFIVNEVDLNNHVVF 206
E K+L +E + + +VGI F GF G+IK+R+ DF+VNE+D V+
Sbjct: 21 ENAAKKLKIEQRTQADGIHEADVGITLFLSPELPGFRGQIKQRYTDFLVNEIDQEGKVIH 80
Query: 207 L 209
L
Sbjct: 81 L 81
>sp|Q96PZ0|Y1897_HUMAN Hypothetical pseudouridine synthase KIAA1897
Length = 661
Score = 33.1 bits (74), Expect = 0.20
Identities = 16/40 (40%), Positives = 26/40 (65%)
Frame = +3
Query: 90 EVGIEEFFDNIGVGFSGKIKERWEDFIVNEVDLNNHVVFL 209
+VGI +F + GFSG +KER+ DF+V+E+ + + L
Sbjct: 113 DVGITKFVSS-HQGFSGILKERYSDFVVHEIGKDGRISHL 151
>sp|O74343|YH2X_SCHPO Hypothetical pseudouridine synthase C1A4.09 in chromosome II
Length = 680
Score = 30.4 bits (67), Expect = 1.3
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +3
Query: 90 EVGIEEFFDNIGVGFSGKIKERWEDFIVNEVDLNNHVVFL 209
+VGI+ F + G IK R+ DF V EVD + ++V L
Sbjct: 51 DVGIDAFLNPNLPSIDGIIKARFTDFAVFEVDTDGNIVHL 90
>sp|Q96ZT9|APE1_SULTO Probable aminopeptidase 1
Length = 786
Score = 29.3 bits (64), Expect = 2.9
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +3
Query: 99 IEEFFDNIGVGFSGKIKERWEDFIVNEVDLNNHVVFLGKY*FTAA 233
IEE FDNI G I E ++ EV V +L K+ F+ A
Sbjct: 347 IEEMFDNISYGKGASILRMIEAYVGEEVFRRGVVNYLNKFKFSNA 391
>sp|Q8N8N7|ZADH1_HUMAN Zinc-binding alcohol dehydrogenase domain containing protein 1
Length = 351
Score = 27.7 bits (60), Expect = 8.6
Identities = 10/40 (25%), Positives = 24/40 (60%)
Frame = +3
Query: 96 GIEEFFDNIGVGFSGKIKERWEDFIVNEVDLNNHVVFLGK 215
G++ +FDN+G S D ++++++ N+H++ G+
Sbjct: 224 GVDVYFDNVGGNIS--------DTVISQMNENSHIILCGQ 255
>sp|Q03498|VATA_PLAFA Vacuolar ATP synthase catalytic subunit A (V-ATPase A subunit)
(Vacuolar proton pump alpha subunit) (V-ATPase 69 kDa
subunit)
sp|Q76NM6|VATA_PLAF7 Vacuolar ATP synthase catalytic subunit A (V-ATPase A subunit)
(Vacuolar proton pump alpha subunit) (V-ATPase 69 kDa
subunit)
Length = 611
Score = 27.7 bits (60), Expect = 8.6
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +3
Query: 99 IEEFFDNIGVGFSGKIKERWEDFIVNEVDLNNHVVFLGK 215
+E++FDN F ++++ D + E DLN+ V +GK
Sbjct: 455 LEQYFDNFDQDFLS-LRQKISDILQQESDLNDIVQLVGK 492
>sp|Q5R806|ZADH1_PONPY Zinc-binding alcohol dehydrogenase domain containing protein 1
Length = 351
Score = 27.7 bits (60), Expect = 8.6
Identities = 10/40 (25%), Positives = 24/40 (60%)
Frame = +3
Query: 96 GIEEFFDNIGVGFSGKIKERWEDFIVNEVDLNNHVVFLGK 215
G++ +FDN+G S D ++++++ N+H++ G+
Sbjct: 224 GVDVYFDNVGGNIS--------DTVISQMNENSHIILCGQ 255
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,724,018
Number of Sequences: 369166
Number of extensions: 628468
Number of successful extensions: 1873
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1873
length of database: 68,354,980
effective HSP length: 52
effective length of database: 58,748,760
effective search space used: 1703714040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)