Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_N20
(787 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P79136|CAPZB_BOVIN F-actin capping protein beta subunit ... 269 7e-72
sp|P47757|CAPZB_MOUSE F-actin capping protein beta subunit ... 262 7e-70
sp|P47756|CAPZB_HUMAN F-actin capping protein beta subunit ... 262 7e-70
sp|P48603|CAPZB_DROME F-actin capping protein beta subunit 262 9e-70
sp|P14315|CAPZB_CHICK F-actin capping protein beta subunit ... 261 1e-69
sp|P34686|CAPZB_CAEEL F-actin capping protein beta subunit 245 1e-64
sp|P13021|CAPZB_DICDI F-actin capping protein beta subunit ... 204 2e-52
sp|Q9HGP5|CAPZB_SCHPO Probable F-actin capping protein beta... 186 8e-47
sp|Q9M9G7|CAPZB_ARATH Probable F-actin capping protein beta... 165 1e-40
sp|P13517|CAPZB_YEAST F-actin capping protein beta subunit 142 8e-34
>sp|P79136|CAPZB_BOVIN F-actin capping protein beta subunit (CapZ beta)
Length = 301
Score = 269 bits (687), Expect = 7e-72
Identities = 128/204 (62%), Positives = 159/204 (77%), Gaps = 1/204 (0%)
Frame = +3
Query: 3 GDSYRSPWSNSYDPPLEDGSLPSDRVRSLEIEANKAFEVYREMYYDGGVSSVYLWDLDSG 182
GDSYRSPWSN YDPPLEDG++PS R+R LE+EAN AF+ YR++Y++GGVSSVYLWDLD G
Sbjct: 97 GDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVYLWDLDHG 156
Query: 183 FAGAVLIKKAGD-IKSATGCWDSIHVIEVEEKGSGRNARYKLTSTIMLWLETQNSETGCF 359
FAG +LIKKAGD K GCWDSIHV+EV+EK SGR A YKLTST+MLWL+T S +G
Sbjct: 157 FAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTNKSGSGTM 216
Query: 360 NLGGSLTRMTEKEVPLSDANNHIVNIGRLVEDMENSIRKQLNDVYFGTSKNLVDSLRSGL 539
NLGGSLTR EK+ +SD + HI NIGRLVEDMEN IR LN++YFG +K++V+ LRS
Sbjct: 217 NLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIVNGLRSVQ 276
Query: 540 SKSVEDQQRKLCQDVKIAIQNKNQ 611
+ + + +Q L D+ A++ K Q
Sbjct: 277 TFADKSKQEALKNDLVEALKRKQQ 300
>sp|P47757|CAPZB_MOUSE F-actin capping protein beta subunit (CapZ beta)
Length = 277
Score = 262 bits (670), Expect = 7e-70
Identities = 122/178 (68%), Positives = 146/178 (82%), Gaps = 1/178 (0%)
Frame = +3
Query: 3 GDSYRSPWSNSYDPPLEDGSLPSDRVRSLEIEANKAFEVYREMYYDGGVSSVYLWDLDSG 182
GDSYRSPWSN YDPPLEDG++PS R+R LE+EAN AF+ YR++Y++GGVSSVYLWDLD G
Sbjct: 68 GDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVYLWDLDHG 127
Query: 183 FAGAVLIKKAGD-IKSATGCWDSIHVIEVEEKGSGRNARYKLTSTIMLWLETQNSETGCF 359
FAG +LIKKAGD K GCWDSIHV+EV+EK SGR A YKLTST+MLWL+T S +G
Sbjct: 128 FAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTNKSGSGTM 187
Query: 360 NLGGSLTRMTEKEVPLSDANNHIVNIGRLVEDMENSIRKQLNDVYFGTSKNLVDSLRS 533
NLGGSLTR EK+ +SD + HI NIGRLVEDMEN IR LN++YFG +K++V+ LRS
Sbjct: 188 NLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIVNGLRS 245
>sp|P47756|CAPZB_HUMAN F-actin capping protein beta subunit (CapZ beta)
Length = 277
Score = 262 bits (670), Expect = 7e-70
Identities = 122/178 (68%), Positives = 146/178 (82%), Gaps = 1/178 (0%)
Frame = +3
Query: 3 GDSYRSPWSNSYDPPLEDGSLPSDRVRSLEIEANKAFEVYREMYYDGGVSSVYLWDLDSG 182
GDSYRSPWSN YDPPLEDG++PS R+R LE+EAN AF+ YR++Y++GGVSSVYLWDLD G
Sbjct: 68 GDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVYLWDLDHG 127
Query: 183 FAGAVLIKKAGD-IKSATGCWDSIHVIEVEEKGSGRNARYKLTSTIMLWLETQNSETGCF 359
FAG +LIKKAGD K GCWDSIHV+EV+EK SGR A YKLTST+MLWL+T S +G
Sbjct: 128 FAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTNKSGSGTM 187
Query: 360 NLGGSLTRMTEKEVPLSDANNHIVNIGRLVEDMENSIRKQLNDVYFGTSKNLVDSLRS 533
NLGGSLTR EK+ +SD + HI NIGRLVEDMEN IR LN++YFG +K++V+ LRS
Sbjct: 188 NLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIVNGLRS 245
>sp|P48603|CAPZB_DROME F-actin capping protein beta subunit
Length = 276
Score = 262 bits (669), Expect = 9e-70
Identities = 126/203 (62%), Positives = 157/203 (77%), Gaps = 1/203 (0%)
Frame = +3
Query: 3 GDSYRSPWSNSYDPPLEDGSLPSDRVRSLEIEANKAFEVYREMYYDGGVSSVYLWDLDSG 182
GDSYRSPWSNSY PPLEDG +PS+R+R LEIEAN AF+ YREMYY+GGVSSVYLWDLD G
Sbjct: 68 GDSYRSPWSNSYYPPLEDGQMPSERLRKLEIEANYAFDQYREMYYEGGVSSVYLWDLDHG 127
Query: 183 FAGAVLIKKAGD-IKSATGCWDSIHVIEVEEKGSGRNARYKLTSTIMLWLETQNSETGCF 359
FA +LIKKAGD K GCWDSIHV+EV+EK +GR A YKLTST MLWL+T +G
Sbjct: 128 FAAVILIKKAGDGSKMIRGCWDSIHVVEVQEKTTGRTAHYKLTSTAMLWLQTNKQGSGTM 187
Query: 360 NLGGSLTRMTEKEVPLSDANNHIVNIGRLVEDMENSIRKQLNDVYFGTSKNLVDSLRSGL 539
NLGGSLTR E++ +S+++ HI NIG++VE+MEN IR LN++YFG +K++V+ LRS
Sbjct: 188 NLGGSLTRQQEQDANVSESSPHIANIGKMVEEMENKIRNTLNEIYFGKTKDIVNGLRSTQ 247
Query: 540 SKSVEDQQRKLCQDVKIAIQNKN 608
S + + QQ + QD+ AI +N
Sbjct: 248 SLADQRQQAAMKQDLAAAILRRN 270
>sp|P14315|CAPZB_CHICK F-actin capping protein beta subunit isoforms 1 and 2 (CapZ 36/32)
(CapZ B1 and B2) (Beta-actinin subunit II)
Length = 277
Score = 261 bits (668), Expect = 1e-69
Identities = 121/178 (67%), Positives = 147/178 (82%), Gaps = 1/178 (0%)
Frame = +3
Query: 3 GDSYRSPWSNSYDPPLEDGSLPSDRVRSLEIEANKAFEVYREMYYDGGVSSVYLWDLDSG 182
GDSYRSPWSN YDPPLEDG++PS R+R LE+EAN AF+ YR++Y++GGVSSVYLWDLD G
Sbjct: 68 GDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVYLWDLDHG 127
Query: 183 FAGAVLIKKAGD-IKSATGCWDSIHVIEVEEKGSGRNARYKLTSTIMLWLETQNSETGCF 359
FAG +LIKKAGD K GCWDSIHV+EV+EK SGR A YKLTST+MLWL+T + +G
Sbjct: 128 FAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTNKTGSGTM 187
Query: 360 NLGGSLTRMTEKEVPLSDANNHIVNIGRLVEDMENSIRKQLNDVYFGTSKNLVDSLRS 533
NLGGSLTR EK+ +SD++ HI NIGRLVEDMEN IR LN++YFG +K++V+ LRS
Sbjct: 188 NLGGSLTRQMEKDETVSDSSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIVNGLRS 245
>sp|P34686|CAPZB_CAEEL F-actin capping protein beta subunit
Length = 270
Score = 245 bits (625), Expect = 1e-64
Identities = 116/203 (57%), Positives = 155/203 (76%), Gaps = 2/203 (0%)
Frame = +3
Query: 3 GDSYRSPWSNSYDPPLEDGSLPSDRVRSLEIEANKAFEVYREMYYDGGVSSVYLWDLDSG 182
GDSYRSPWSN+YDPPLEDG LPS++ R +EIEAN AFE YR++Y++GGVSSVY WDLD+G
Sbjct: 68 GDSYRSPWSNTYDPPLEDGQLPSEKRRKMEIEANAAFESYRDLYFEGGVSSVYFWDLDNG 127
Query: 183 -FAGAVLIKKAGD-IKSATGCWDSIHVIEVEEKGSGRNARYKLTSTIMLWLETQNSETGC 356
FAG VLIKK GD K+ TGCWDSIHVIE+ E+ R A YKLTSTIMLWL+T S +G
Sbjct: 128 GFAGIVLIKKEGDGAKNITGCWDSIHVIEITERA--RQAHYKLTSTIMLWLQTNKSSSGV 185
Query: 357 FNLGGSLTRMTEKEVPLSDANNHIVNIGRLVEDMENSIRKQLNDVYFGTSKNLVDSLRSG 536
NLGGSLTR E + P++D N H+ N+GR++ED E+ +R +N++YFG +K ++ LRS
Sbjct: 186 MNLGGSLTRQHEMDAPINDQNTHLANMGRMIEDQESKMRLTINEIYFGKTKKVMSDLRST 245
Query: 537 LSKSVEDQQRKLCQDVKIAIQNK 605
+S ++Q ++ +++ A+ N+
Sbjct: 246 EKQSELEKQDEIVRELNNAMANR 268
>sp|P13021|CAPZB_DICDI F-actin capping protein beta subunit (CAP32)
Length = 272
Score = 204 bits (519), Expect = 2e-52
Identities = 100/204 (49%), Positives = 136/204 (66%), Gaps = 4/204 (1%)
Frame = +3
Query: 6 DSYRSPWSNSYDPPLEDGSLPSDRVRSLEIEANKAFEVYREMYYDGGVSSVYLWDLDSGF 185
DSYRSPWSN YDPPL PS ++R +E++AN+ FE+Y +Y++GGVSSVY WDLD F
Sbjct: 69 DSYRSPWSNKYDPPLSGACYPSSKLRDIEVQANEIFEIYLNLYFEGGVSSVYCWDLDDNF 128
Query: 186 AGAVLIKKAGDI----KSATGCWDSIHVIEVEEKGSGRNARYKLTSTIMLWLETQNSETG 353
A VL+KK D + G WDSIHV+EV + G A YKLTST+ML +ET N TG
Sbjct: 129 AAVVLMKKTQDQSKKGQPMRGTWDSIHVVEV-KLGKKDKAVYKLTSTVMLSIETDNDNTG 187
Query: 354 CFNLGGSLTRMTEKEVPLSDANNHIVNIGRLVEDMENSIRKQLNDVYFGTSKNLVDSLRS 533
NL GSLTR EKE ++ + H VNIG++VEDME+ +R+ L +YFG +K +V++LR+
Sbjct: 188 KVNLAGSLTRQDEKEYTFNEVDTHCVNIGKMVEDMESKLRQTLETIYFGKTKEVVNTLRN 247
Query: 534 GLSKSVEDQQRKLCQDVKIAIQNK 605
S ++++ L + AI N+
Sbjct: 248 ATGNSELEKRKNLSNQIGSAIGNR 271
>sp|Q9HGP5|CAPZB_SCHPO Probable F-actin capping protein beta subunit
Length = 268
Score = 186 bits (471), Expect = 8e-47
Identities = 94/182 (51%), Positives = 122/182 (67%), Gaps = 5/182 (2%)
Frame = +3
Query: 3 GDSYRSPWSNSYDPPLEDGSLPSDRVRSLEIEANKAFEVYREMYYDGGVSSVYLWDLDSG 182
GDSYRSPWSN YDPPLEDG + +DRVR LE+ N+A VY ++YY+GGVSSVYLWD D
Sbjct: 66 GDSYRSPWSNKYDPPLEDGLVSTDRVRKLEVSLNEAIRVYLDLYYEGGVSSVYLWDQDDS 125
Query: 183 FAGAVLIKKAGDIKSATGCWDSIHVIEVEEKGSGRNARYKLTSTIMLWLETQNSE----- 347
+AGAVLIKKA S+ WDSIHV E Y+LTSTI+L+L + + E
Sbjct: 126 YAGAVLIKKASTSNSSG--WDSIHVFECLPTTETNVYDYRLTSTIILFLSSGSEEQSALP 183
Query: 348 TGCFNLGGSLTRMTEKEVPLSDANNHIVNIGRLVEDMENSIRKQLNDVYFGTSKNLVDSL 527
+ NL G LTR T + +P +D + I N+G+LVE+ME +R L DVYFG +K++++
Sbjct: 184 SKALNLSGHLTRQTSQRLPAADDDTEIANVGKLVEEMETRMRNFLQDVYFGKTKDIINQT 243
Query: 528 RS 533
RS
Sbjct: 244 RS 245
>sp|Q9M9G7|CAPZB_ARATH Probable F-actin capping protein beta subunit (CapZ-beta)
Length = 256
Score = 165 bits (417), Expect = 1e-40
Identities = 85/183 (46%), Positives = 117/183 (63%), Gaps = 8/183 (4%)
Frame = +3
Query: 6 DSYRSPWSNSYDPPLEDGSLPSDRVRSLEIEANKAFEVYREMYYDGGVSSVYLWDLDS-G 182
DSYRSPWSN Y PPLED PS +R LE+EAN F +YR+ YY+GG+SSVY+W+ D+ G
Sbjct: 64 DSYRSPWSNKYLPPLEDALYPSSELRKLEVEANDIFAIYRDQYYEGGISSVYMWEDDNEG 123
Query: 183 FAGAVLIKKAGDIKS-------ATGCWDSIHVIEVEEKGSGRNARYKLTSTIMLWLETQN 341
F LIKK G G WD+IHVI+V + A+Y LTSTIML L T +
Sbjct: 124 FVACFLIKKDGSKSGHGRRGCLEEGAWDAIHVIQVGSE-EEEMAQYCLTSTIMLSLTTDD 182
Query: 342 SETGCFNLGGSLTRMTEKEVPLSDANNHIVNIGRLVEDMENSIRKQLNDVYFGTSKNLVD 521
+G F L GS+ R + E+ ++D H+ N+GR++E++E +R L+ VYFG ++ +V
Sbjct: 183 ESSGKFGLSGSIRRQMKMELAVAD--GHLCNMGRMIEELEGKLRNSLDQVYFGKTREMVC 240
Query: 522 SLR 530
+LR
Sbjct: 241 TLR 243
>sp|P13517|CAPZB_YEAST F-actin capping protein beta subunit
Length = 287
Score = 142 bits (359), Expect = 8e-34
Identities = 83/211 (39%), Positives = 124/211 (58%), Gaps = 20/211 (9%)
Frame = +3
Query: 6 DSYRSPWSNSYDPPL-----EDGSLPSDRVRSLEIEANKAFEVYREMYYDGGVSSVYLWD 170
DS+RSPWSN+Y P L +D PS +R LEI AN +F+VYR++YY+GG+SSVYLWD
Sbjct: 70 DSFRSPWSNTYYPELSPKDLQDSPFPSAPLRKLEILANDSFDVYRDLYYEGGISSVYLWD 129
Query: 171 LDS------GFAGAVLIKKAGDIKSATGCWDSIHVIEVEEKGSGRNA-RYKLTSTIMLWL 329
L+ FAG VL KK +S WDSIHV EV S ++ Y++T+TI+L L
Sbjct: 130 LNEEDFNGHDFAGVVLFKKN---QSDHSNWDSIHVFEVTTSPSSPDSFNYRVTTTIILHL 186
Query: 330 E-TQNSETGCFNLGGSLTRMTEKEVPLSDA-------NNHIVNIGRLVEDMENSIRKQLN 485
+ T+ + L G+LTR TEK++ + + +H+ N+G L+ED+E+ +R L
Sbjct: 187 DKTKTDQNSHMMLSGNLTRQTEKDIAIDMSRPLDVIFTSHVANLGSLIEDIESQMRNLLE 246
Query: 486 DVYFGTSKNLVDSLRSGLSKSVEDQQRKLCQ 578
VYF ++++ ++ S ++ K Q
Sbjct: 247 TVYFEKTRDIFHQTKNAAIASSAEEANKDAQ 277
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,038,109
Number of Sequences: 369166
Number of extensions: 1951044
Number of successful extensions: 4829
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4801
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7405750800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)