Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_N04
(778 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P54731|FAF1_MOUSE FAS-associated factor 1 (FAF1 protein) 57 7e-08
sp|Q924K2|FAF1_RAT FAS-associated factor 1 (FAF1 protein) 57 7e-08
sp|Q9UNN5|FAF1_HUMAN FAS-associated factor 1 (FAF1 protein)... 55 2e-07
sp|Q99105|MYSU_RABIT Myosin heavy chain, embryonic smooth m... 37 0.046
sp|P14105|MYH9_CHICK Myosin-9 (Myosin heavy chain, nonmuscl... 36 0.13
sp|Q8VDD5|MYH9_MOUSE Myosin-9 (Myosin heavy chain, nonmuscl... 35 0.30
sp|Q61879|MYH10_MOUSE Myosin-10 (Myosin heavy chain, nonmus... 34 0.39
sp|P35580|MYH10_HUMAN Myosin-10 (Myosin heavy chain, nonmus... 34 0.39
sp|Q9JLT0|MYH10_RAT Myosin-10 (Myosin heavy chain, nonmuscl... 34 0.39
sp|Q27991|MYH10_BOVIN Myosin-10 (Myosin heavy chain, nonmus... 34 0.39
>sp|P54731|FAF1_MOUSE FAS-associated factor 1 (FAF1 protein)
Length = 649
Score = 56.6 bits (135), Expect = 7e-08
Identities = 43/166 (25%), Positives = 79/166 (47%), Gaps = 4/166 (2%)
Frame = +1
Query: 4 NSARGEIDKEDLIGKLRSVLRDFEAPIVAARTDREERIKTQHLRLQQDMDYAESLRMDRE 183
N +G ++L+ +L + + F A D +ER ++++ +QD Y SL DR
Sbjct: 464 NVIQGNTTVDELMMRLMAAMEIFSAQQQEDIKDEDEREARENVKREQDEAYRLSLEADRA 523
Query: 184 KEQVVQAQKENERKVAALRXXXXXXXXXXXXXXXXTRNLISSKLPSQP--ENVDNTILIR 357
K + + + + ++ +R R + LP +P EN + +R
Sbjct: 524 KREAHEREMAEQFRLEQIR-------KEQEEEREAIRLSLEQALPPEPKEENAEPVSKLR 576
Query: 358 IKTPSGQ-LSHRFYTSDSLKMLYYVVKAQPDTPWN-FQISSNFPKK 489
I+TPSG+ L RF S+ L++++ V A PW+ F++ S FP++
Sbjct: 577 IRTPSGEFLERRFLASNKLQIVFDFV-ASKGFPWDEFKLLSTFPRR 621
>sp|Q924K2|FAF1_RAT FAS-associated factor 1 (FAF1 protein)
Length = 649
Score = 56.6 bits (135), Expect = 7e-08
Identities = 43/166 (25%), Positives = 79/166 (47%), Gaps = 4/166 (2%)
Frame = +1
Query: 4 NSARGEIDKEDLIGKLRSVLRDFEAPIVAARTDREERIKTQHLRLQQDMDYAESLRMDRE 183
N +G ++L+ +L + + F A D +ER ++++ +QD Y SL DR
Sbjct: 464 NVIQGNTTVDELMMRLMAAMEIFSAQQQEDIKDEDEREARENVKREQDEAYRLSLEADRA 523
Query: 184 KEQVVQAQKENERKVAALRXXXXXXXXXXXXXXXXTRNLISSKLPSQP--ENVDNTILIR 357
K + + + + ++ +R R + LP +P EN + +R
Sbjct: 524 KREAHEREMAEQFRLEQIR-------KEQEEEREAIRLSLEQALPPEPEEENAEPVSKLR 576
Query: 358 IKTPSGQ-LSHRFYTSDSLKMLYYVVKAQPDTPWN-FQISSNFPKK 489
I+TPSG+ L RF S+ L++++ V A PW+ F++ S FP++
Sbjct: 577 IRTPSGEFLERRFLASNKLQIVFDFV-ASKGFPWDEFKLLSTFPRR 621
>sp|Q9UNN5|FAF1_HUMAN FAS-associated factor 1 (FAF1 protein) (hFAF1)
Length = 650
Score = 55.1 bits (131), Expect = 2e-07
Identities = 42/166 (25%), Positives = 79/166 (47%), Gaps = 4/166 (2%)
Frame = +1
Query: 4 NSARGEIDKEDLIGKLRSVLRDFEAPIVAARTDREERIKTQHLRLQQDMDYAESLRMDRE 183
N +G ++L+ +L + + F A D +ER ++++ +QD Y SL DR
Sbjct: 465 NVIQGNTTVDELMMRLMAAMEIFTAQQQEDIKDEDEREARENVKREQDEAYRLSLEADRA 524
Query: 184 KEQVVQAQKENERKVAALRXXXXXXXXXXXXXXXXTRNLISSKLPSQP--ENVDNTILIR 357
K + + + + ++ +R R + LP +P EN + +R
Sbjct: 525 KREAHEREMAEQFRLEQIR-------KEQEEEREAIRLSLEQALPPEPKEENAEPVSKLR 577
Query: 358 IKTPSGQ-LSHRFYTSDSLKMLYYVVKAQPDTPWN-FQISSNFPKK 489
I+TPSG+ L RF S+ L++++ V A PW+ +++ S FP++
Sbjct: 578 IRTPSGEFLERRFLASNKLQIVFDFV-ASKGFPWDEYKLLSTFPRR 622
>sp|Q99105|MYSU_RABIT Myosin heavy chain, embryonic smooth muscle isoform
Length = 501
Score = 37.4 bits (85), Expect = 0.046
Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Frame = +1
Query: 46 KLRSVLRDFEAPIVAARTDREERIKTQHLRLQQDM-DYAESLRMDR-EKEQVVQAQKENE 219
K+ L+D EA I AA RE R+K Q RLQ M DY L R ++++ KE+E
Sbjct: 146 KMEIDLKDLEAQIEAANKARERRVK-QLRRLQAQMKDYQRELEEARGSRDEIFAQSKESE 204
Query: 220 RKVAAL 237
+K+ +L
Sbjct: 205 KKLKSL 210
>sp|P14105|MYH9_CHICK Myosin-9 (Myosin heavy chain, nonmuscle IIa) (Nonmuscle myosin heavy
chain IIa) (NMMHC II-a) (NMMHC-IIA) (Cellular myosin
heavy chain, type A) (Nonmuscle myosin heavy chain-A)
(NMMHC-A)
Length = 1959
Score = 35.8 bits (81), Expect = 0.13
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +1
Query: 46 KLRSVLRDFEAPIVAARTDREERIKTQHLRLQQDMDYAESLRMDR-EKEQVVQAQKENER 222
KL L+D E+ I A +R+E IK Q DY L R +E+++ KENE+
Sbjct: 1614 KLELDLKDLESHIDTANKNRDEAIKHVRKLQAQMKDYMRELEDTRTSREEILAQAKENEK 1673
Query: 223 KVAAL 237
K+ ++
Sbjct: 1674 KLKSM 1678
>sp|Q8VDD5|MYH9_MOUSE Myosin-9 (Myosin heavy chain, nonmuscle IIa) (Nonmuscle myosin heavy
chain IIa) (NMMHC II-a) (NMMHC-IIA) (Cellular myosin
heavy chain, type A) (Nonmuscle myosin heavy chain-A)
(NMMHC-A)
Length = 1960
Score = 34.7 bits (78), Expect = 0.30
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +1
Query: 46 KLRSVLRDFEAPIVAARTDREERIKTQHLRLQQDMDYAESLRMDR-EKEQVVQAQKENER 222
KL L+D EA I A +REE IK Q D L R +E+++ KENE+
Sbjct: 1614 KLEMDLKDLEAHIDTANKNREEAIKQLRKLQAQMKDCMRELDDTRASREEILAQAKENEK 1673
Query: 223 KVAAL 237
K+ ++
Sbjct: 1674 KLKSM 1678
>sp|Q61879|MYH10_MOUSE Myosin-10 (Myosin heavy chain, nonmuscle IIb) (Nonmuscle myosin heavy
chain IIb) (NMMHC II-b) (NMMHC-IIB) (Cellular myosin
heavy chain, type B) (Nonmuscle myosin heavy chain-B)
(NMMHC-B)
Length = 1976
Score = 34.3 bits (77), Expect = 0.39
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +1
Query: 46 KLRSVLRDFEAPIVAARTDREERIKTQHLRLQQDMDYAESLRMDR-EKEQVVQAQKENER 222
K+ L+D EA I AA R+E IK Q DY L R ++++ KE+E+
Sbjct: 1621 KMEIDLKDLEAQIEAANKARDEVIKQLRKLQAQMKDYQRELEEARASRDEIFAQSKESEK 1680
Query: 223 KVAAL 237
K+ +L
Sbjct: 1681 KLKSL 1685
>sp|P35580|MYH10_HUMAN Myosin-10 (Myosin heavy chain, nonmuscle IIb) (Nonmuscle myosin heavy
chain IIb) (NMMHC II-b) (NMMHC-IIB) (Cellular myosin
heavy chain, type B) (Nonmuscle myosin heavy chain-B)
(NMMHC-B)
Length = 1976
Score = 34.3 bits (77), Expect = 0.39
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +1
Query: 46 KLRSVLRDFEAPIVAARTDREERIKTQHLRLQQDMDYAESLRMDR-EKEQVVQAQKENER 222
K+ L+D EA I AA R+E IK Q DY L R ++++ KE+E+
Sbjct: 1621 KMEIDLKDLEAQIEAANKARDEVIKQLRKLQAQMKDYQRELEEARASRDEIFAQSKESEK 1680
Query: 223 KVAAL 237
K+ +L
Sbjct: 1681 KLKSL 1685
>sp|Q9JLT0|MYH10_RAT Myosin-10 (Myosin heavy chain, nonmuscle IIb) (Nonmuscle myosin heavy
chain IIb) (NMMHC II-b) (NMMHC-IIB) (Cellular myosin
heavy chain, type B) (Nonmuscle myosin heavy chain-B)
(NMMHC-B)
Length = 1976
Score = 34.3 bits (77), Expect = 0.39
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +1
Query: 46 KLRSVLRDFEAPIVAARTDREERIKTQHLRLQQDMDYAESLRMDR-EKEQVVQAQKENER 222
K+ L+D EA I AA R+E IK Q DY L R ++++ KE+E+
Sbjct: 1621 KMEIDLKDLEAQIEAANKARDEVIKQLRKLQAQMKDYQRELEEARASRDEIFAQSKESEK 1680
Query: 223 KVAAL 237
K+ +L
Sbjct: 1681 KLKSL 1685
>sp|Q27991|MYH10_BOVIN Myosin-10 (Myosin heavy chain, nonmuscle IIb) (Nonmuscle myosin heavy
chain IIb) (NMMHC II-b) (NMMHC-IIB) (Cellular myosin
heavy chain, type B) (Nonmuscle myosin heavy chain-B)
(NMMHC-B)
Length = 1976
Score = 34.3 bits (77), Expect = 0.39
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +1
Query: 46 KLRSVLRDFEAPIVAARTDREERIKTQHLRLQQDMDYAESLRMDR-EKEQVVQAQKENER 222
K+ L+D EA I AA R+E IK Q DY L R ++++ KE+E+
Sbjct: 1621 KMEIDLKDLEAQIEAANKARDEVIKQLRKLQAQMKDYQRELEEARASRDEIFAQSKESEK 1680
Query: 223 KVAAL 237
K+ +L
Sbjct: 1681 KLKSL 1685
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,454,684
Number of Sequences: 369166
Number of extensions: 1496842
Number of successful extensions: 3902
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3887
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7260540000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)