Planarian EST Database

Dr_sW_004_N03

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_004_N03
         (872 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8U149|SYR_PYRFU  Arginyl-tRNA synthetase (Arginine--tRNA...    30   8.8  

>sp|Q8U149|SYR_PYRFU Arginyl-tRNA synthetase (Arginine--tRNA ligase) (ArgRS)
          Length = 629

 Score = 30.0 bits (66), Expect = 8.8
 Identities = 24/113 (21%), Positives = 48/113 (42%), Gaps = 4/113 (3%)
 Frame = -2

Query: 538 MKFLVYKFETSNYVE---IKLIKIYFNIIQLLVKPKQIMLTKNXXXXXXXXXXYICPLIY 368
           ++FL Y+ E  NY++   ++  ++Y+  + L  K  ++M              ++  L+Y
Sbjct: 152 LRFLGYQVEVQNYIDDLGVQFAQVYWGYLNLKRKFDELMKELKEKIPKNNPIDHVLGLLY 211

Query: 367 TKVSNSRPSTNIFAARSIYLYTK-*RRNTIGKIIAERFVKCQDANIKSF*FFY 212
            +V+     ++        L  K   R   G+ +AE  VK Q   + S   +Y
Sbjct: 212 VEVNKKIEESSEVEKEIRELMKKLEERELNGRKLAEEVVKAQMETLYSLNIYY 264

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,508,722
Number of Sequences: 369166
Number of extensions: 1356812
Number of successful extensions: 2559
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2558
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8646143400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)