Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_N01
(858 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q13523|PRP4B_HUMAN Serine/threonine-protein kinase PRP4 ... 358 8e-99
sp|Q61136|PRP4B_MOUSE Serine/threonine-protein kinase PRP4 ... 358 8e-99
sp|Q07538|PRP4_SCHPO Serine/threonine-protein kinase prp4 276 7e-74
sp|Q9P6P3|KKB3_SCHPO Putative serine/threonine-protein kina... 180 4e-45
sp|Q09815|KAB7_SCHPO Probable serine/threonine-protein kina... 174 3e-43
sp|P49657|MNB_DROME Serine/threonine-protein kinase minibrain 158 2e-38
sp|Q9V3D5|DYRK2_DROME Dual specificity tyrosine-phosphoryla... 154 2e-37
sp|Q13627|DYR1A_HUMAN Dual specificity tyrosine-phosphoryla... 154 4e-37
sp|Q61214|DYR1A_MOUSE Dual specificity tyrosine-phosphoryla... 154 4e-37
sp|Q63470|DYR1A_RAT Dual specificity tyrosine-phosphorylati... 154 4e-37
>sp|Q13523|PRP4B_HUMAN Serine/threonine-protein kinase PRP4 homolog (PRP4 pre-mRNA
processing factor 4 homolog) (PRP4 kinase)
Length = 1007
Score = 358 bits (920), Expect = 8e-99
Identities = 172/275 (62%), Positives = 214/275 (77%), Gaps = 1/275 (0%)
Frame = +3
Query: 3 VDFLKKINELDRNDKFHCVRLLRQFTHKNHLCLVFESLEMNLRDVLKKYGRNVGLHITAI 182
++FLKK+N+ D +DKFHC+RL R F HK HLCLVFE L MNLR+VLKKYG++VGLHI A+
Sbjct: 733 LEFLKKLNDADPDDKFHCLRLFRHFYHKQHLCLVFEPLSMNLREVLKKYGKDVGLHIKAV 792
Query: 183 RSYAQQMLLSLKLIKKAEILHADIKPDNILVNENKTLLKLSDFGSASTFEDNEITEYLVS 362
RSY+QQ+ L+LKL+K+ ILHADIKPDNILVNE+KT+LKL DFGSAS DN+IT YLVS
Sbjct: 793 RSYSQQLFLALKLLKRCNILHADIKPDNILVNESKTILKLCDFGSASHVADNDITPYLVS 852
Query: 363 RFYRAPEIMLGLKYDYNIDMWSIGTTLYELFTGQIMFPGKNNNEMLKLIMDAKGRFPNKM 542
RFYRAPEI++G YDY IDMWS+G TLYEL+TG+I+FPGK NN MLKL MD KG+ PNKM
Sbjct: 853 RFYRAPEIIIGKSYDYGIDMWSVGCTLYELYTGKILFPGKTNNHMLKLAMDLKGKMPNKM 912
Query: 543 VRKAQFRDKYFDEQFNFLFKEIDKVTEMERVKVYRPPQPI-TLNFDLFVRSKQTDDDVYK 719
+RK F+D++FD+ NF++ E+DKVTE E+V V P L DL + +D K
Sbjct: 913 IRKGVFKDQHFDQNLNFMYIEVDKVTEREKVTVMSTINPTKDLLADLIGCQRLPEDQRKK 972
Query: 720 VKQFRDFLDKMLQLDPSKRVSINDALNHPFITESV 824
V Q +D LD++L LDP+KR+SIN AL H FI E +
Sbjct: 973 VHQLKDLLDQILMLDPAKRISINQALQHAFIQEKI 1007
>sp|Q61136|PRP4B_MOUSE Serine/threonine-protein kinase PRP4 homolog (PRP4 pre-mRNA
processing factor 4 homolog) (Pre-mRNA protein kinase)
Length = 1007
Score = 358 bits (920), Expect = 8e-99
Identities = 172/275 (62%), Positives = 214/275 (77%), Gaps = 1/275 (0%)
Frame = +3
Query: 3 VDFLKKINELDRNDKFHCVRLLRQFTHKNHLCLVFESLEMNLRDVLKKYGRNVGLHITAI 182
++FLKK+N+ D +DKFHC+RL R F HK HLCLVFE L MNLR+VLKKYG++VGLHI A+
Sbjct: 733 LEFLKKLNDADPDDKFHCLRLFRHFYHKQHLCLVFEPLSMNLREVLKKYGKDVGLHIKAV 792
Query: 183 RSYAQQMLLSLKLIKKAEILHADIKPDNILVNENKTLLKLSDFGSASTFEDNEITEYLVS 362
RSY+QQ+ L+LKL+K+ ILHADIKPDNILVNE+KT+LKL DFGSAS DN+IT YLVS
Sbjct: 793 RSYSQQLFLALKLLKRCNILHADIKPDNILVNESKTILKLCDFGSASHVADNDITPYLVS 852
Query: 363 RFYRAPEIMLGLKYDYNIDMWSIGTTLYELFTGQIMFPGKNNNEMLKLIMDAKGRFPNKM 542
RFYRAPEI++G YDY IDMWS+G TLYEL+TG+I+FPGK NN MLKL MD KG+ PNKM
Sbjct: 853 RFYRAPEIIIGKSYDYGIDMWSVGCTLYELYTGKILFPGKTNNHMLKLAMDLKGKMPNKM 912
Query: 543 VRKAQFRDKYFDEQFNFLFKEIDKVTEMERVKVYRPPQPI-TLNFDLFVRSKQTDDDVYK 719
+RK F+D++FD+ NF++ E+DKVTE E+V V P L DL + +D K
Sbjct: 913 IRKGVFKDQHFDQNLNFMYIEVDKVTEREKVTVMSTINPTKDLLADLIGCQRLPEDQRKK 972
Query: 720 VKQFRDFLDKMLQLDPSKRVSINDALNHPFITESV 824
V Q +D LD++L LDP+KR+SIN AL H FI E +
Sbjct: 973 VHQLKDLLDQILMLDPAKRISINQALQHAFIQEKI 1007
>sp|Q07538|PRP4_SCHPO Serine/threonine-protein kinase prp4
Length = 477
Score = 276 bits (705), Expect = 7e-74
Identities = 135/273 (49%), Positives = 188/273 (68%), Gaps = 4/273 (1%)
Frame = +3
Query: 3 VDFLKKINELDRNDKFHCVRLLRQFTHKNHLCLVFESLEMNLRDVLKKYGRNVGLHITAI 182
V L+++ DR K H + R F HKNHLC+VFE L +NLRD+LKK+GRNVGL I A+
Sbjct: 204 VSILERLQAADREGKQHIIHYERHFMHKNHLCMVFEMLSLNLRDILKKFGRNVGLSIKAV 263
Query: 183 RSYAQQMLLSLKLIKKAEILHADIKPDNILVNENKTLLKLSDFGSASTFEDNEITEYLVS 362
R YA QM ++L L+K+ ++H+DIKPDN+LVNE + +LK+ D GSAS +NEIT YLVS
Sbjct: 264 RLYAYQMFMALDLLKQCNVIHSDIKPDNMLVNEKRNILKICDLGSASDASENEITPYLVS 323
Query: 363 RFYRAPEIMLGLKYDYNIDMWSIGTTLYELFTGQIMFPGKNNNEMLKLIMDAKGRFPNKM 542
RFYRAPEI+LG Y ID WS+G +LYEL+TGQI+FPG+ NN+ML+ +M+ KG+F +KM
Sbjct: 324 RFYRAPEIILGFPYSCPIDTWSVGCSLYELYTGQILFPGRTNNQMLRYMMECKGKFSHKM 383
Query: 543 VRKAQFRDKYFDEQFNFLFKEIDKVTEMERVKVYRPPQPITLNFDLFVRSKQ----TDDD 710
++++QF + +FD FNF+ + D +T E K + +P D+ R K+ TD++
Sbjct: 384 LKRSQFLNDHFDADFNFIQIDHDPITNQETRKPVKFSKPTK---DIRSRLKEVPTSTDEE 440
Query: 711 VYKVKQFRDFLDKMLQLDPSKRVSINDALNHPF 809
++ D L+K L+L+P KRV AL HPF
Sbjct: 441 FIIRQELMDLLEKCLELNPEKRVPPEVALKHPF 473
>sp|Q9P6P3|KKB3_SCHPO Putative serine/threonine-protein kinase C823.03
Length = 534
Score = 180 bits (457), Expect = 4e-45
Identities = 109/280 (38%), Positives = 164/280 (58%), Gaps = 16/280 (5%)
Frame = +3
Query: 24 NELDRNDKFHCVRLLRQFTHKNHLCLVFESLEMNLRDVLKKYGRNVGLHITAIRSYAQQM 203
N+ D DK H +RL QF HKNHLCLVFE L +NL +++K+ + GLH++ +RS+A Q+
Sbjct: 183 NKYDPEDKRHLIRLYDQFMHKNHLCLVFELLSINLYELIKQ-NQFRGLHLSLVRSFATQL 241
Query: 204 LLSLKLIKKAEILHADIKPDNILVNE-NKTLLKLSDFGSASTFEDNEITEYLVSRFYRAP 380
L L+K+A I+H D+KP+NIL+ + + ++K+ DFGSA E + Y+ SRFYR+P
Sbjct: 242 LSCTSLLKQARIIHCDLKPENILLQDLSSPIVKVIDFGSAC-HERQTVYTYIQSRFYRSP 300
Query: 381 EIMLGLKYDYNIDMWSIGTTLYELFTGQIMFPGKNNNEMLKLIMDAKGRFPNKMVRKAQF 560
E++LGL Y+ IDMWS+G L ELF G +FPG + L I+D G P M+ +
Sbjct: 301 EVILGLHYNCGIDMWSLGCILAELFLGLPLFPGNSEYNQLCRIVDMLGNPPTWMLEMGKN 360
Query: 561 RDKYFDEQF-----NFLFKEIDKVTEMERVKVYRPPQ---------PITLNFD-LFVRSK 695
KY++ F + K I++ + +E K +P + I LN+ K
Sbjct: 361 SKKYYNSGFVNGRKTYELKSIEQFS-IENNKTEQPGKQYFGEKTLDAIVLNYPRRKTTPK 419
Query: 696 QTDDDVYKVKQFRDFLDKMLQLDPSKRVSINDALNHPFIT 815
T ++ + F DF+ + L+L+P KR + + A NHPFIT
Sbjct: 420 LTPEEHEERLCFIDFIKQFLELNPLKRWTPDQAKNHPFIT 459
>sp|Q09815|KAB7_SCHPO Probable serine/threonine-protein kinase C16C9.07
Length = 836
Score = 174 bits (441), Expect = 3e-43
Identities = 108/274 (39%), Positives = 153/274 (55%), Gaps = 4/274 (1%)
Frame = +3
Query: 3 VDFLKKINELDRNDKFHCVRLLRQFTHKNHLCLVFESLEMNLRDVLKKYGRNVGLHITAI 182
V LK++ E D DK + +R L F + HLC+V E L NL DV+++ GL + +
Sbjct: 563 VGILKRLCEADPADKNNVIRYLSHFDFRGHLCIVTELLGSNLFDVIRENNYK-GLPLIVV 621
Query: 183 RSYAQQMLLSLKLIKKAEILHADIKPDNILVNEN-KTLLKLSDFGSASTFEDNEITEYLV 359
+S+A Q L +L+L++ I+H D+KP+N+L++ K +KL DFGS S F + ++ YL
Sbjct: 622 KSFALQGLQALRLLQGQNIIHCDLKPENLLLSHPLKARIKLIDFGS-SCFYNEKVYTYLQ 680
Query: 360 SRFYRAPEIMLGLKYDYNIDMWSIGTTLYELFTGQIMFPGKNNNEMLKLIMDAKGRFPNK 539
SRFYRAPEI+LGL+Y ID+WS G L ELFTG +FPG N E L IM+ G P
Sbjct: 681 SRFYRAPEIILGLEYGKEIDIWSFGCILAELFTGVPLFPGGNETEQLGYIMEVLGPPPMA 740
Query: 540 MVRKAQFRDKYFDEQFNFLFKEIDKVTEMERVKVYRPPQPITLNFD-LFVRSKQTDDDVY 716
++R + YFD + P PIT + + L V S +T +
Sbjct: 741 LIRNSTRSKAYFDSE--------------------GKPHPITDSHNRLLVPSTRTFSQLL 780
Query: 717 KVKQ--FRDFLDKMLQLDPSKRVSINDALNHPFI 812
KQ F DFL K L+ DP R++++ AL H FI
Sbjct: 781 NTKQASFLDFLSKCLKWDPKDRITVDSALQHEFI 814
>sp|P49657|MNB_DROME Serine/threonine-protein kinase minibrain
Length = 908
Score = 158 bits (400), Expect = 2e-38
Identities = 100/284 (35%), Positives = 161/284 (56%), Gaps = 15/284 (5%)
Frame = +3
Query: 3 VDFLKKINELDRNDKFHCVRLLRQFTHKNHLCLVFESLEMNLRDVLKKYG-RNVGLHITA 179
V L+ +N D +K++ V+L R F +NHLCLVFE L NL D+L+ R V L++T
Sbjct: 209 VKLLEMMNRADAENKYYIVKLKRHFMWRNHLCLVFELLSYNLYDLLRNTNFRGVSLNLT- 267
Query: 180 IRSYAQQMLLSLKLIKKAE--ILHADIKPDNILV-NENKTLLKLSDFGSASTFEDNEITE 350
R +AQQ+ +L + E I+H D+KP+NIL+ N ++ +K+ DFGS+ I
Sbjct: 268 -RKFAQQLCTALLFLSTPELNIIHCDLKPENILLCNPKRSAIKIVDFGSSCQL-GQRIYH 325
Query: 351 YLVSRFYRAPEIMLGLKYDYNIDMWSIGTTLYELFTGQIMFPGKNNNEMLKLIMDAKGRF 530
Y+ SRFYR+PE++LG++YD IDMWS+G L E+ TG+ +F G N + + I++ G
Sbjct: 326 YIQSRFYRSPEVLLGIQYDLAIDMWSLGCILVEMHTGEPLFSGCNEVDQMNKIVEVLGMP 385
Query: 531 PNKMVRKAQFRDKYFDE---QFNFLFKEIDKVTEMERVKVYRPPQPITLNFDLFVRS--- 692
P ++ +A K+FD+ +++ K + + + Y+PP L+ L V +
Sbjct: 386 PKYLLDQAHKTRKFFDKIVADGSYVLK------KNQNGRKYKPPGSRKLHDILGVETGGP 439
Query: 693 --KQTDDDVYKVK---QFRDFLDKMLQLDPSKRVSINDALNHPF 809
++ D+ + V +F+D + +ML DP RV+ AL H F
Sbjct: 440 GGRRLDEPGHSVSDYLKFKDLILRMLDFDPKTRVTPYYALQHNF 483
>sp|Q9V3D5|DYRK2_DROME Dual specificity tyrosine-phosphorylation regulated kinase 2 (dDyrk2)
(Smell impaired protein at 35A)
Length = 722
Score = 154 bits (390), Expect = 2e-37
Identities = 93/284 (32%), Positives = 158/284 (55%), Gaps = 1/284 (0%)
Frame = +3
Query: 3 VDFLKKINELDRNDKFHCVRLLRQFTHKNHLCLVFESLEMNLRDVLKKYGRNVGLHITAI 182
++ L ++ E D + + + +L + HLC+ FE + +NL +++KK N G ++ I
Sbjct: 243 LNILDELREKDADGSHNVIHMLDYTYFRKHLCITFELMSLNLYELIKKNNYN-GFSMSLI 301
Query: 183 RSYAQQMLLSLKLIKKAEILHADIKPDNILVNEN-KTLLKLSDFGSASTFEDNEITEYLV 359
R + ++ L+L+ K I+H D+KP+NIL+ + + +K+ DFGS S + D +I Y+
Sbjct: 302 RRFCNSIVKCLRLLYKENIIHCDLKPENILLKQRGSSSIKVIDFGS-SCYVDRKIYTYIQ 360
Query: 360 SRFYRAPEIMLGLKYDYNIDMWSIGTTLYELFTGQIMFPGKNNNEMLKLIMDAKGRFPNK 539
SRFYR+PE++LGL+Y IDMWS+G L EL+TG +FPG+N E L IM+ G P
Sbjct: 361 SRFYRSPEVILGLQYGTAIDMWSLGCILAELYTGFPLFPGENEVEQLACIMEVLGLPPKV 420
Query: 540 MVRKAQFRDKYFDEQFNFLFKEIDKVTEMERVKVYRPPQPITLNFDLFVRSKQTDDDVYK 719
++ A+ R +FD + +T + K R P +L L +
Sbjct: 421 LISVARRRRLFFDSR-----DAPRCITNTKGRK--RSPGSKSLAHILHCQD--------- 464
Query: 720 VKQFRDFLDKMLQLDPSKRVSINDALNHPFITESVKK*YLSCKI 851
+ F DFL + L+ DP++R++ ++A +H F+ S + SC++
Sbjct: 465 -RYFIDFLQRCLEWDPAERMTPDEAAHHEFLQPSASSRHRSCRM 507
>sp|Q13627|DYR1A_HUMAN Dual specificity tyrosine-phosphorylation regulated kinase 1A
(Protein kinase minibrain homolog) (MNBH) (HP86) (Dual
specificity YAK1-related kinase)
Length = 763
Score = 154 bits (388), Expect = 4e-37
Identities = 100/285 (35%), Positives = 159/285 (55%), Gaps = 12/285 (4%)
Frame = +3
Query: 3 VDFLKKINELDRNDKFHCVRLLRQFTHKNHLCLVFESLEMNLRDVLKKYG-RNVGLHITA 179
V L+ +N+ D K++ V L R F +NHLCLVFE L NL D+L+ R V L++T
Sbjct: 204 VRLLELMNKHDTEMKYYIVHLKRHFMFRNHLCLVFEMLSYNLYDLLRNTNFRGVSLNLT- 262
Query: 180 IRSYAQQMLLSLKLIKKAE--ILHADIKPDNILV-NENKTLLKLSDFGSASTFEDNEITE 350
R +AQQM +L + E I+H D+KP+NIL+ N ++ +K+ DFGS+ I +
Sbjct: 263 -RKFAQQMCTALLFLATPELSIIHCDLKPENILLCNPKRSAIKIVDFGSSCQL-GQRIYQ 320
Query: 351 YLVSRFYRAPEIMLGLKYDYNIDMWSIGTTLYELFTGQIMFPGKNNNEMLKLIMDAKGRF 530
Y+ SRFYR+PE++LG+ YD IDMWS+G L E+ TG+ +F G N + + I++ G
Sbjct: 321 YIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGANEVDQMNKIVEVLGIP 380
Query: 531 PNKMVRKAQFRDKYFDEQFNFLFKEIDKVTEMERVKVYRPPQPITLNFDLFV-------- 686
P ++ +A K+F++ + + + K + +R Y+PP L+ L V
Sbjct: 381 PAHILDQAPKARKFFEKLPDGTW-NLKKTKDGKR--EYKPPGTRKLHNILGVETGGPGGR 437
Query: 687 RSKQTDDDVYKVKQFRDFLDKMLQLDPSKRVSINDALNHPFITES 821
R+ ++ V +F+D + +ML DP R+ AL H F ++
Sbjct: 438 RAGESGHTVADYLKFKDLILRMLDYDPKTRIQPYYALQHSFFKKT 482
>sp|Q61214|DYR1A_MOUSE Dual specificity tyrosine-phosphorylation regulated kinase 1A
(Protein kinase minibrain homolog) (MNBH) (MP86) (Dual
specificity YAK1-related kinase)
Length = 763
Score = 154 bits (388), Expect = 4e-37
Identities = 100/285 (35%), Positives = 159/285 (55%), Gaps = 12/285 (4%)
Frame = +3
Query: 3 VDFLKKINELDRNDKFHCVRLLRQFTHKNHLCLVFESLEMNLRDVLKKYG-RNVGLHITA 179
V L+ +N+ D K++ V L R F +NHLCLVFE L NL D+L+ R V L++T
Sbjct: 204 VRLLELMNKHDTEMKYYIVHLKRHFMFRNHLCLVFEMLSYNLYDLLRNTNFRGVSLNLT- 262
Query: 180 IRSYAQQMLLSLKLIKKAE--ILHADIKPDNILV-NENKTLLKLSDFGSASTFEDNEITE 350
R +AQQM +L + E I+H D+KP+NIL+ N ++ +K+ DFGS+ I +
Sbjct: 263 -RKFAQQMCTALLFLATPELSIIHCDLKPENILLCNPKRSAIKIVDFGSSCQL-GQRIYQ 320
Query: 351 YLVSRFYRAPEIMLGLKYDYNIDMWSIGTTLYELFTGQIMFPGKNNNEMLKLIMDAKGRF 530
Y+ SRFYR+PE++LG+ YD IDMWS+G L E+ TG+ +F G N + + I++ G
Sbjct: 321 YIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGANEVDQMNKIVEVLGIP 380
Query: 531 PNKMVRKAQFRDKYFDEQFNFLFKEIDKVTEMERVKVYRPPQPITLNFDLFV-------- 686
P ++ +A K+F++ + + + K + +R Y+PP L+ L V
Sbjct: 381 PAHILDQAPKARKFFEKLPDGTW-SLKKTKDGKR--EYKPPGTRKLHNILGVETGGPGGR 437
Query: 687 RSKQTDDDVYKVKQFRDFLDKMLQLDPSKRVSINDALNHPFITES 821
R+ ++ V +F+D + +ML DP R+ AL H F ++
Sbjct: 438 RAGESGHTVADYLKFKDLILRMLDYDPKTRIQPYYALQHSFFKKT 482
>sp|Q63470|DYR1A_RAT Dual specificity tyrosine-phosphorylation regulated kinase 1A
(Protein kinase minibrain homolog) (MNBH) (RP86) (Dual
specificity YAK1-related kinase)
Length = 763
Score = 154 bits (388), Expect = 4e-37
Identities = 100/285 (35%), Positives = 159/285 (55%), Gaps = 12/285 (4%)
Frame = +3
Query: 3 VDFLKKINELDRNDKFHCVRLLRQFTHKNHLCLVFESLEMNLRDVLKKYG-RNVGLHITA 179
V L+ +N+ D K++ V L R F +NHLCLVFE L NL D+L+ R V L++T
Sbjct: 204 VRLLELMNKHDTEMKYYIVHLKRHFMFRNHLCLVFEMLSYNLYDLLRNTNFRGVSLNLT- 262
Query: 180 IRSYAQQMLLSLKLIKKAE--ILHADIKPDNILV-NENKTLLKLSDFGSASTFEDNEITE 350
R +AQQM +L + E I+H D+KP+NIL+ N ++ +K+ DFGS+ I +
Sbjct: 263 -RKFAQQMCTALLFLATPELSIIHCDLKPENILLCNPKRSAIKIVDFGSSCQL-GQRIYQ 320
Query: 351 YLVSRFYRAPEIMLGLKYDYNIDMWSIGTTLYELFTGQIMFPGKNNNEMLKLIMDAKGRF 530
Y+ SRFYR+PE++LG+ YD IDMWS+G L E+ TG+ +F G N + + I++ G
Sbjct: 321 YIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGANEVDQMNKIVEVLGIP 380
Query: 531 PNKMVRKAQFRDKYFDEQFNFLFKEIDKVTEMERVKVYRPPQPITLNFDLFV-------- 686
P ++ +A K+F++ + + + K + +R Y+PP L+ L V
Sbjct: 381 PAHILDQAPKARKFFEKLPDGTW-SLKKTKDGKR--EYKPPGTRKLHNILGVETGGPGGR 437
Query: 687 RSKQTDDDVYKVKQFRDFLDKMLQLDPSKRVSINDALNHPFITES 821
R+ ++ V +F+D + +ML DP R+ AL H F ++
Sbjct: 438 RAGESGHTVADYLKFKDLILRMLDYDPKTRIQPYYALQHSFFKKT 482
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,019,891
Number of Sequences: 369166
Number of extensions: 1949640
Number of successful extensions: 9496
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7655
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8486520240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)