Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_M10
(844 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P42638|TPM2_SCHMA Tropomyosin 2 (TMII) 272 1e-72
sp|Q95PU1|TPM_ECHMU Tropomyosin 271 1e-72
sp|P42637|TPM1_SCHMA Tropomyosin 1 (TMI) (Polypeptide 49) 266 4e-71
sp|Q26519|TPM_SCHJA Tropomyosin 265 1e-70
sp|P43689|TPM2_BIOGL Tropomyosin 2 (TMII) 263 4e-70
sp|Q26503|TPM_SCHHA Tropomyosin 263 4e-70
sp|Q23758|TPM_CLOSI Tropomyosin 256 4e-68
sp|O97192|TPM_HELAS Tropomyosin (Allergen Hel as 1) 256 5e-68
sp|Q9GZ71|TPM_HALDV Tropomyosin 254 2e-67
sp|P42636|TPM1_BIOGL Tropomyosin 1 (TMI) (Bg 39) 250 4e-66
>sp|P42638|TPM2_SCHMA Tropomyosin 2 (TMII)
Length = 284
Score = 272 bits (695), Expect = 1e-72
Identities = 144/204 (70%), Positives = 167/204 (81%)
Frame = +3
Query: 231 QVQTDCETAKEALKEVNSNLEATEKRAGEAEGEVQALTKRIRLLEDDLEQTETRLQEATG 410
QV TD ETA+ L E N+ LE T+KRA EAE EV +L KRIR LED+LE TETRLQEAT
Sbjct: 52 QVDTDKETAQTQLAETNTKLEETDKRATEAEAEVASLQKRIRQLEDELESTETRLQEATV 111
Query: 411 KYEEASKAADESERGRKVLETRSIADEERLAQLEEQLKEAKYIAEDADRKYDEAARKLAI 590
K EEASKAADES+RGRKVLE R+ ADEER+ QLEEQLKE+ ++AEDADRKYDEAARKLAI
Sbjct: 112 KLEEASKAADESDRGRKVLENRTFADEERINQLEEQLKESTFMAEDADRKYDEAARKLAI 171
Query: 591 TEVDLERAESRLESADSKVXXXXXXXRVVGNNMKSLEISEQEAVQREEVYEETIRDLSDK 770
TEV+LERAESRLE+A+SK+ R+VGNN+KSLEISEQEA QREE YEE IRDL+++
Sbjct: 172 TEVELERAESRLEAAESKITELEEELRIVGNNVKSLEISEQEAAQREEAYEENIRDLTER 231
Query: 771 LKSTEQRATEAERQVATLQTEVDR 842
LK+ E RA E+ER V TLQ + DR
Sbjct: 232 LKAAEDRAQESERLVNTLQADADR 255
Score = 37.4 bits (85), Expect = 0.052
Identities = 20/87 (22%), Positives = 43/87 (49%)
Frame = +3
Query: 576 RKLAITEVDLERAESRLESADSKVXXXXXXXRVVGNNMKSLEISEQEAVQREEVYEETIR 755
+K+ ++D E A + ++K+ + + + Q+ +E + +
Sbjct: 6 KKMLAMKLDKENAVDEADQLEAKLREKELEMQTKDEEVAEVLKKIQQVDTDKETAQTQLA 65
Query: 756 DLSDKLKSTEQRATEAERQVATLQTEV 836
+ + KL+ T++RATEAE +VA+LQ +
Sbjct: 66 ETNTKLEETDKRATEAEAEVASLQKRI 92
>sp|Q95PU1|TPM_ECHMU Tropomyosin
Length = 284
Score = 271 bits (694), Expect = 1e-72
Identities = 138/203 (67%), Positives = 172/203 (84%)
Frame = +3
Query: 234 VQTDCETAKEALKEVNSNLEATEKRAGEAEGEVQALTKRIRLLEDDLEQTETRLQEATGK 413
+QT+ +T +E+L+E S LE TEKRA AE EV A+T+RIRLLE+D EQ+ RL E + K
Sbjct: 53 IQTEVDTVQESLQEAISKLEETEKRATNAEAEVAAMTRRIRLLEEDFEQSSGRLTETSTK 112
Query: 414 YEEASKAADESERGRKVLETRSIADEERLAQLEEQLKEAKYIAEDADRKYDEAARKLAIT 593
++ASKAA+ESER RK LETRSI+D+ER+AQLEEQ+KEAKYIAEDA+RKYDEAAR+LA+T
Sbjct: 113 LDDASKAAEESERNRKTLETRSISDDERMAQLEEQVKEAKYIAEDAERKYDEAARRLAVT 172
Query: 594 EVDLERAESRLESADSKVXXXXXXXRVVGNNMKSLEISEQEAVQREEVYEETIRDLSDKL 773
EVDLERAESRLE+++SK+ R+VGNNMKSLE+SEQE++QREE YEETIRDL+++L
Sbjct: 173 EVDLERAESRLETSESKIVELEEELRIVGNNMKSLEVSEQESLQREESYEETIRDLTERL 232
Query: 774 KSTEQRATEAERQVATLQTEVDR 842
K+ EQRA EAERQV+ LQ EVDR
Sbjct: 233 KTAEQRAAEAERQVSKLQNEVDR 255
>sp|P42637|TPM1_SCHMA Tropomyosin 1 (TMI) (Polypeptide 49)
Length = 284
Score = 266 bits (681), Expect = 4e-71
Identities = 141/203 (69%), Positives = 165/203 (81%)
Frame = +3
Query: 231 QVQTDCETAKEALKEVNSNLEATEKRAGEAEGEVQALTKRIRLLEDDLEQTETRLQEATG 410
Q Q DC+ A+E L+E + LE T+KRA AE EV A+T+RIRLLE+DLE + +RL E
Sbjct: 52 QAQIDCDEAQETLQEQMNKLEETDKRATNAEAEVAAMTRRIRLLEEDLEVSSSRLTETLT 111
Query: 411 KYEEASKAADESERGRKVLETRSIADEERLAQLEEQLKEAKYIAEDADRKYDEAARKLAI 590
K EEASK A+ESERGRK LE RSIAD+ERL QLE+Q KEAKYIAEDADRKYDEAARKLAI
Sbjct: 112 KLEEASKTAEESERGRKDLEIRSIADDERLNQLEDQQKEAKYIAEDADRKYDEAARKLAI 171
Query: 591 TEVDLERAESRLESADSKVXXXXXXXRVVGNNMKSLEISEQEAVQREEVYEETIRDLSDK 770
EVD ERAE+RLE+A+SK+ RVVGNNMK+LEISEQE+ QREE YEETIRDL+++
Sbjct: 172 AEVDFERAEARLEAAESKIVELEEELRVVGNNMKALEISEQESAQREESYEETIRDLTER 231
Query: 771 LKSTEQRATEAERQVATLQTEVD 839
LK+ EQRATEAERQV+ LQ EVD
Sbjct: 232 LKAAEQRATEAERQVSKLQNEVD 254
Score = 42.7 bits (99), Expect = 0.001
Identities = 39/194 (20%), Positives = 83/194 (42%)
Frame = +3
Query: 261 EALKEVNSNLEATEKRAGEAEGEVQALTKRIRLLEDDLEQTETRLQEATGKYEEASKAAD 440
+ +K+ ++ ++ A E + + L K+ E++ E+ E+ + E K ++A D
Sbjct: 2 DGIKKKMIAMKLEKENAMERAVQYEELLKK---KEEEREKRESEIAELNNKMKQAQIDCD 58
Query: 441 ESERGRKVLETRSIADEERLAQLEEQLKEAKYIAEDADRKYDEAARKLAITEVDLERAES 620
E++ E L + +L+E A +A+ + R++ + E DLE + S
Sbjct: 59 EAQ--------------ETLQEQMNKLEETDKRATNAEAEVAAMTRRIRLLEEDLEVSSS 104
Query: 621 RLESADSKVXXXXXXXRVVGNNMKSLEISEQEAVQREEVYEETIRDLSDKLKSTEQRATE 800
RL +K+ K LEI +R E+ ++ + +++ E
Sbjct: 105 RLTETLTKLEEASKTAEESERGRKDLEIRSIADDERLNQLEDQQKEAKYIAEDADRKYDE 164
Query: 801 AERQVATLQTEVDR 842
A R++A + + +R
Sbjct: 165 AARKLAIAEVDFER 178
Score = 39.7 bits (91), Expect = 0.011
Identities = 19/58 (32%), Positives = 35/58 (60%)
Frame = +3
Query: 249 ETAKEALKEVNSNLEATEKRAGEAEGEVQALTKRIRLLEDDLEQTETRLQEATGKYEE 422
E+ +E ++++ L+A E+RA EAE +V L + LEDDL + R + +G+ ++
Sbjct: 219 ESYEETIRDLTERLKAAEQRATEAERQVSKLQNEVDHLEDDLLAEKERYKALSGELDQ 276
>sp|Q26519|TPM_SCHJA Tropomyosin
Length = 284
Score = 265 bits (677), Expect = 1e-70
Identities = 140/203 (68%), Positives = 164/203 (80%)
Frame = +3
Query: 231 QVQTDCETAKEALKEVNSNLEATEKRAGEAEGEVQALTKRIRLLEDDLEQTETRLQEATG 410
Q Q DC+ +E L+E + LE TEKRA AE +V A+T+RIRLLE+DLE + +RL E
Sbjct: 52 QAQIDCDEVQETLQEQMNKLEETEKRATNAEAQVAAMTRRIRLLEEDLEVSSSRLTETLT 111
Query: 411 KYEEASKAADESERGRKVLETRSIADEERLAQLEEQLKEAKYIAEDADRKYDEAARKLAI 590
K EEASK A+ESERGRK LE RSIAD+ERL QLE+Q KEAKYIAEDADRKYDEAARKLAI
Sbjct: 112 KLEEASKTAEESERGRKDLEIRSIADDERLNQLEDQQKEAKYIAEDADRKYDEAARKLAI 171
Query: 591 TEVDLERAESRLESADSKVXXXXXXXRVVGNNMKSLEISEQEAVQREEVYEETIRDLSDK 770
EVD ERAE+RLE+A+SK+ RVVGNNMK+LEISEQE+ QREE YEETIRDL+++
Sbjct: 172 AEVDFERAEARLEAAESKIVELEEELRVVGNNMKALEISEQESAQREESYEETIRDLTER 231
Query: 771 LKSTEQRATEAERQVATLQTEVD 839
LK+ EQRATEAERQV+ LQ EVD
Sbjct: 232 LKAAEQRATEAERQVSKLQNEVD 254
Score = 41.6 bits (96), Expect = 0.003
Identities = 36/147 (24%), Positives = 66/147 (44%), Gaps = 3/147 (2%)
Frame = +3
Query: 411 KYEEASKAADE-SERGRKVLETRSIADE--ERLAQLEEQLKEAKYIAEDADRKYDEAARK 581
K EE K +E SE K+ + + DE E L + +L+E + A +A+ + R+
Sbjct: 32 KEEEREKRENEISELNTKMKQAQIDCDEVQETLQEQMNKLEETEKRATNAEAQVAAMTRR 91
Query: 582 LAITEVDLERAESRLESADSKVXXXXXXXRVVGNNMKSLEISEQEAVQREEVYEETIRDL 761
+ + E DLE + SRL +K+ K LEI +R E+ ++
Sbjct: 92 IRLLEEDLEVSSSRLTETLTKLEEASKTAEESERGRKDLEIRSIADDERLNQLEDQQKEA 151
Query: 762 SDKLKSTEQRATEAERQVATLQTEVDR 842
+ +++ EA R++A + + +R
Sbjct: 152 KYIAEDADRKYDEAARKLAIAEVDFER 178
Score = 39.7 bits (91), Expect = 0.011
Identities = 19/58 (32%), Positives = 35/58 (60%)
Frame = +3
Query: 249 ETAKEALKEVNSNLEATEKRAGEAEGEVQALTKRIRLLEDDLEQTETRLQEATGKYEE 422
E+ +E ++++ L+A E+RA EAE +V L + LEDDL + R + +G+ ++
Sbjct: 219 ESYEETIRDLTERLKAAEQRATEAERQVSKLQNEVDHLEDDLLAEKERYKALSGELDQ 276
>sp|P43689|TPM2_BIOGL Tropomyosin 2 (TMII)
Length = 284
Score = 263 bits (672), Expect = 4e-70
Identities = 139/205 (67%), Positives = 164/205 (80%)
Frame = +3
Query: 228 TQVQTDCETAKEALKEVNSNLEATEKRAGEAEGEVQALTKRIRLLEDDLEQTETRLQEAT 407
+ +Q D +TA E L E + LEA+EK E E + L +RI+LLE+DLE++E RLQ AT
Sbjct: 51 SNLQNDFDTANEGLTEAQTKLEASEKHVAELESDTAGLNRRIQLLEEDLERSEERLQSAT 110
Query: 408 GKYEEASKAADESERGRKVLETRSIADEERLAQLEEQLKEAKYIAEDADRKYDEAARKLA 587
K EEASKAADESERGRKVLE+RS+AD+ERL LE QLKEAKYIAEDA+RKYDEAARKLA
Sbjct: 111 EKLEEASKAADESERGRKVLESRSLADDERLDGLEAQLKEAKYIAEDAERKYDEAARKLA 170
Query: 588 ITEVDLERAESRLESADSKVXXXXXXXRVVGNNMKSLEISEQEAVQREEVYEETIRDLSD 767
ITEVDLERAE+RLE+A++K+ +VVGNNMKSLEISEQEA QRE+ YEETIRDL+
Sbjct: 171 ITEVDLERAEARLEAAEAKIIELEEELKVVGNNMKSLEISEQEASQREDSYEETIRDLTQ 230
Query: 768 KLKSTEQRATEAERQVATLQTEVDR 842
+LK E RATEAER V+ LQ EVDR
Sbjct: 231 RLKDAENRATEAERTVSKLQKEVDR 255
Score = 32.3 bits (72), Expect = 1.7
Identities = 16/57 (28%), Positives = 31/57 (54%)
Frame = +3
Query: 249 ETAKEALKEVNSNLEATEKRAGEAEGEVQALTKRIRLLEDDLEQTETRLQEATGKYE 419
++ +E ++++ L+ E RA EAE V L K + LED+L + R + + + +
Sbjct: 219 DSYEETIRDLTQRLKDAENRATEAERTVSKLQKEVDRLEDELLAEKERYKSISDELD 275
>sp|Q26503|TPM_SCHHA Tropomyosin
Length = 284
Score = 263 bits (672), Expect = 4e-70
Identities = 138/203 (67%), Positives = 164/203 (80%)
Frame = +3
Query: 231 QVQTDCETAKEALKEVNSNLEATEKRAGEAEGEVQALTKRIRLLEDDLEQTETRLQEATG 410
Q Q DC+ +E L+E + LE T+KRA AE EV A+T+RIRLLE+DLE + +RL E
Sbjct: 52 QAQIDCDEVQETLQEQMNKLEETDKRATNAEAEVAAMTRRIRLLEEDLEVSSSRLTETLT 111
Query: 411 KYEEASKAADESERGRKVLETRSIADEERLAQLEEQLKEAKYIAEDADRKYDEAARKLAI 590
K EEASK A+ESERGRK LE RSIAD+ERL QLE+Q KEAKYIAEDADRKYDEAARKLAI
Sbjct: 112 KLEEASKTAEESERGRKDLEIRSIADDERLNQLEDQQKEAKYIAEDADRKYDEAARKLAI 171
Query: 591 TEVDLERAESRLESADSKVXXXXXXXRVVGNNMKSLEISEQEAVQREEVYEETIRDLSDK 770
EVD +RAE+RLE+A+SK+ RV+GNNMK+LEISEQE+ QREE YEETIRDL+++
Sbjct: 172 AEVDFKRAEARLEAAESKIVELEEELRVIGNNMKALEISEQESAQREESYEETIRDLTER 231
Query: 771 LKSTEQRATEAERQVATLQTEVD 839
LK+ EQRATEAERQV+ LQ EVD
Sbjct: 232 LKAAEQRATEAERQVSKLQNEVD 254
Score = 40.0 bits (92), Expect = 0.008
Identities = 44/184 (23%), Positives = 81/184 (44%)
Frame = +3
Query: 261 EALKEVNSNLEATEKRAGEAEGEVQALTKRIRLLEDDLEQTETRLQEATGKYEEASKAAD 440
+ +K+ ++ ++ A E + + L K+ E++ E+ E+ + E K ++A D
Sbjct: 2 DGIKKKMIAMKLEKENAMERAVQYEELLKK---KEEEREKRESEIAELNTKMKQAQIDCD 58
Query: 441 ESERGRKVLETRSIADEERLAQLEEQLKEAKYIAEDADRKYDEAARKLAITEVDLERAES 620
E V ET +E++ +LEE K A +A+ + R++ + E DLE + S
Sbjct: 59 E------VQETL----QEQMNKLEETDKRAT----NAEAEVAAMTRRIRLLEEDLEVSSS 104
Query: 621 RLESADSKVXXXXXXXRVVGNNMKSLEISEQEAVQREEVYEETIRDLSDKLKSTEQRATE 800
RL +K+ K LEI R +E + L D+ K + A +
Sbjct: 105 RLTETLTKLEEASKTAEESERGRKDLEI-------RSIADDERLNQLEDQQKEAKYIAED 157
Query: 801 AERQ 812
A+R+
Sbjct: 158 ADRK 161
Score = 39.7 bits (91), Expect = 0.011
Identities = 19/58 (32%), Positives = 35/58 (60%)
Frame = +3
Query: 249 ETAKEALKEVNSNLEATEKRAGEAEGEVQALTKRIRLLEDDLEQTETRLQEATGKYEE 422
E+ +E ++++ L+A E+RA EAE +V L + LEDDL + R + +G+ ++
Sbjct: 219 ESYEETIRDLTERLKAAEQRATEAERQVSKLQNEVDHLEDDLLAEKERYKALSGELDQ 276
>sp|Q23758|TPM_CLOSI Tropomyosin
Length = 284
Score = 256 bits (655), Expect = 4e-68
Identities = 134/203 (66%), Positives = 163/203 (80%)
Frame = +3
Query: 231 QVQTDCETAKEALKEVNSNLEATEKRAGEAEGEVQALTKRIRLLEDDLEQTETRLQEATG 410
Q QT+ + +EAL++ + +E T+KRA AE EV +T+RIRLLE+DLE + +RL E
Sbjct: 52 QAQTELDEIQEALQDSLNKMEETDKRATNAEAEVARMTRRIRLLEEDLEVSSSRLTETLA 111
Query: 411 KYEEASKAADESERGRKVLETRSIADEERLAQLEEQLKEAKYIAEDADRKYDEAARKLAI 590
K++EASK A+ESERGRK LE RSIAD+E L+QLE+Q KE KYIAEDADRKYDEAARKLAI
Sbjct: 112 KFDEASKTAEESERGRKELEIRSIADDEGLSQLEDQQKEGKYIAEDADRKYDEAARKLAI 171
Query: 591 TEVDLERAESRLESADSKVXXXXXXXRVVGNNMKSLEISEQEAVQREEVYEETIRDLSDK 770
EVD ERAESRLE+A+SK+ RVVGNNMK+LEISEQE+ QREE YEETIRDL+++
Sbjct: 172 VEVDFERAESRLEAAESKIVELEEELRVVGNNMKALEISEQESAQREESYEETIRDLTER 231
Query: 771 LKSTEQRATEAERQVATLQTEVD 839
LK+ EQRA EAERQV+ LQ EVD
Sbjct: 232 LKAAEQRAAEAERQVSKLQNEVD 254
Score = 40.8 bits (94), Expect = 0.005
Identities = 19/58 (32%), Positives = 35/58 (60%)
Frame = +3
Query: 249 ETAKEALKEVNSNLEATEKRAGEAEGEVQALTKRIRLLEDDLEQTETRLQEATGKYEE 422
E+ +E ++++ L+A E+RA EAE +V L + LEDDL + R ++ +G ++
Sbjct: 219 ESYEETIRDLTERLKAAEQRAAEAERQVSKLQNEVDHLEDDLLSEKIRYKDLSGGLDQ 276
Score = 39.7 bits (91), Expect = 0.011
Identities = 43/205 (20%), Positives = 78/205 (38%), Gaps = 7/205 (3%)
Frame = +3
Query: 249 ETAKEALKEVNSNLEATEKRAGEAEGEVQALTKRIRLLEDDLEQTETRLQEATGKYEEAS 428
E A E + + L+ E+ + E E+ L R++ + +L++ + LQ++ K EE
Sbjct: 16 ENAMERAVQYEAQLKQKEEEQEKKETEIGELNNRMKQAQTELDEIQEALQDSLNKMEETD 75
Query: 429 KAADESERGRKVLETRSIADEERLAQLEEQLKEAKYIAEDADRKYDEAARKLAITEVDLE 608
K A +E A+ R+ R++ + E DLE
Sbjct: 76 KRATNAE-----------AEVARMT------------------------RRIRLLEEDLE 100
Query: 609 RAESRLESADSKVXXXXXXXRVVGNNMKSLEISEQEAVQREEVYEETIRDLSDKLK---- 776
+ SRL +K K LEI R +E + L D+ K
Sbjct: 101 VSSSRLTETLAKFDEASKTAEESERGRKELEI-------RSIADDEGLSQLEDQQKEGKY 153
Query: 777 ---STEQRATEAERQVATLQTEVDR 842
+++ EA R++A ++ + +R
Sbjct: 154 IAEDADRKYDEAARKLAIVEVDFER 178
>sp|O97192|TPM_HELAS Tropomyosin (Allergen Hel as 1)
Length = 284
Score = 256 bits (654), Expect = 5e-68
Identities = 135/203 (66%), Positives = 164/203 (80%)
Frame = +3
Query: 234 VQTDCETAKEALKEVNSNLEATEKRAGEAEGEVQALTKRIRLLEDDLEQTETRLQEATGK 413
++ D ++ E L + N+ LEA+EK+ E E E L +RI+LLE+DLE++E RLQ AT K
Sbjct: 53 LENDFDSINEQLLDANTKLEASEKKNAEIESETAGLQRRIQLLEEDLERSEERLQSATEK 112
Query: 414 YEEASKAADESERGRKVLETRSIADEERLAQLEEQLKEAKYIAEDADRKYDEAARKLAIT 593
EEASKAADESERGRKVLE+RS+AD+ERL LE QLKEAKYIAEDA+RK+DEAARKLAIT
Sbjct: 113 LEEASKAADESERGRKVLESRSLADDERLDGLEAQLKEAKYIAEDAERKFDEAARKLAIT 172
Query: 594 EVDLERAESRLESADSKVXXXXXXXRVVGNNMKSLEISEQEAVQREEVYEETIRDLSDKL 773
EVDLERAE+RLE+A++K+ +VVGNNMKSLEISEQEA QRE+ YEETIRDL+ +L
Sbjct: 173 EVDLERAEARLEAAEAKILELEEELKVVGNNMKSLEISEQEASQREDSYEETIRDLTQRL 232
Query: 774 KSTEQRATEAERQVATLQTEVDR 842
K E RA+EAER V+ LQ EVDR
Sbjct: 233 KDAENRASEAERTVSKLQKEVDR 255
Score = 33.1 bits (74), Expect = 0.99
Identities = 16/57 (28%), Positives = 31/57 (54%)
Frame = +3
Query: 249 ETAKEALKEVNSNLEATEKRAGEAEGEVQALTKRIRLLEDDLEQTETRLQEATGKYE 419
++ +E ++++ L+ E RA EAE V L K + LED+L + R + + + +
Sbjct: 219 DSYEETIRDLTQRLKDAENRASEAERTVSKLQKEVDRLEDELLAEKERYKATSDELD 275
>sp|Q9GZ71|TPM_HALDV Tropomyosin
Length = 284
Score = 254 bits (649), Expect = 2e-67
Identities = 134/203 (66%), Positives = 161/203 (79%)
Frame = +3
Query: 234 VQTDCETAKEALKEVNSNLEATEKRAGEAEGEVQALTKRIRLLEDDLEQTETRLQEATGK 413
++ D + E L+E + LE +EKR E E EV T++I LLE+DLE+ E RLQ AT +
Sbjct: 53 LENDFDNVNEQLQEAMAKLETSEKRVTEMEQEVSGTTRKITLLEEDLERNEERLQTATER 112
Query: 414 YEEASKAADESERGRKVLETRSIADEERLAQLEEQLKEAKYIAEDADRKYDEAARKLAIT 593
EEASKAADESERG +VLE+RS+AD+ER+ QLE QLKEAKYIAEDA+RKYDEAARKLAIT
Sbjct: 113 LEEASKAADESERGARVLESRSLADDERIDQLEAQLKEAKYIAEDAERKYDEAARKLAIT 172
Query: 594 EVDLERAESRLESADSKVXXXXXXXRVVGNNMKSLEISEQEAVQREEVYEETIRDLSDKL 773
EVDLERAE+RLE+A++K+ +VVGNNMKSLEISEQEA QRE+ YEETIRDL+ +L
Sbjct: 173 EVDLERAEARLEAAEAKILELEEELKVVGNNMKSLEISEQEASQREDSYEETIRDLTQRL 232
Query: 774 KSTEQRATEAERQVATLQTEVDR 842
K E RATEAER V+ LQ EVDR
Sbjct: 233 KDAENRATEAERTVSKLQKEVDR 255
Score = 32.0 bits (71), Expect = 2.2
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +3
Query: 249 ETAKEALKEVNSNLEATEKRAGEAEGEVQALTKRIRLLEDDL 374
++ +E ++++ L+ E RA EAE V L K + LED+L
Sbjct: 219 DSYEETIRDLTQRLKDAENRATEAERTVSKLQKEVDRLEDEL 260
>sp|P42636|TPM1_BIOGL Tropomyosin 1 (TMI) (Bg 39)
Length = 284
Score = 250 bits (638), Expect = 4e-66
Identities = 131/205 (63%), Positives = 159/205 (77%)
Frame = +3
Query: 228 TQVQTDCETAKEALKEVNSNLEATEKRAGEAEGEVQALTKRIRLLEDDLEQTETRLQEAT 407
+ +Q D +TA E L E + LEA+EK E E + L +RI+LLE+DLE++E RLQ AT
Sbjct: 51 SNLQNDFDTANEGLTEAQTKLEASEKHVAELESDTAGLNRRIQLLEEDLERSEERLQSAT 110
Query: 408 GKYEEASKAADESERGRKVLETRSIADEERLAQLEEQLKEAKYIAEDADRKYDEAARKLA 587
K EEASKAADESERGRKVLE+RS+AD+ERL LE QLKEAKYIAEDA+RKYDEAARKLA
Sbjct: 111 EKLEEASKAADESERGRKVLESRSLADDERLDGLEAQLKEAKYIAEDAERKYDEAARKLA 170
Query: 588 ITEVDLERAESRLESADSKVXXXXXXXRVVGNNMKSLEISEQEAVQREEVYEETIRDLSD 767
ITEVDLERAE+RLE+A++KV +VGNN+K+L I +A QRE+ Y+ETIRDL+
Sbjct: 171 ITEVDLERAEARLEAAEAKVWELDEELHIVGNNIKTLSIQNDQASQREDSYQETIRDLTQ 230
Query: 768 KLKSTEQRATEAERQVATLQTEVDR 842
+LK E RATEAER V+ LQ EVDR
Sbjct: 231 RLKDAENRATEAERTVSKLQKEVDR 255
Score = 32.3 bits (72), Expect = 1.7
Identities = 16/57 (28%), Positives = 31/57 (54%)
Frame = +3
Query: 249 ETAKEALKEVNSNLEATEKRAGEAEGEVQALTKRIRLLEDDLEQTETRLQEATGKYE 419
++ +E ++++ L+ E RA EAE V L K + LED+L + R + + + +
Sbjct: 219 DSYQETIRDLTQRLKDAENRATEAERTVSKLQKEVDRLEDELLAEKERYKSISDELD 275
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,284,388
Number of Sequences: 369166
Number of extensions: 721062
Number of successful extensions: 6763
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6280
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8245425915
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)