Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_M09
(212 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q04461|YM01_YEAST Hypothetical 52.4 kDa protein in ILV2-... 29 3.8
sp|Q6JUT9|ATG25_PICAN Autophagy-related protein 25 (Peroxis... 28 8.5
sp|Q9KTQ4|ACFD_VIBCH Accessory colonization factor AcfD pre... 28 8.5
>sp|Q04461|YM01_YEAST Hypothetical 52.4 kDa protein in ILV2-ADE17 intergenic region
Length = 462
Score = 28.9 bits (63), Expect = 3.8
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +3
Query: 30 CYLEMITVNEAFSKEIDKLDSTCDAEYFKTLKNNANARKKLLADCAAAR 176
C L M + E FSK++DKL+ +Y TLK R+ L + AR
Sbjct: 396 CRLSMSQLYEYFSKKMDKLE-----DYSLTLKRRGKPRRIFLLEEREAR 439
>sp|Q6JUT9|ATG25_PICAN Autophagy-related protein 25 (Peroxisome degradation deficient
protein 4)
Length = 384
Score = 27.7 bits (60), Expect = 8.5
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +3
Query: 66 SKEIDKLDSTCDAEYFKTLKNNANARKK 149
S ++DK+ S A++++ + NN NA+ K
Sbjct: 169 SLQLDKIKSDLQAKHYQAMLNNVNAKNK 196
>sp|Q9KTQ4|ACFD_VIBCH Accessory colonization factor AcfD precursor
Length = 1520
Score = 27.7 bits (60), Expect = 8.5
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 3 IRHE-EMPKDCYLEMITVNEAFSKEIDKLDST 95
+RH ++PKD +LE IT A ++DK ST
Sbjct: 170 LRHNLDLPKDQFLEAITEKIANDNQVDKQPST 201
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,596,805
Number of Sequences: 369166
Number of extensions: 242372
Number of successful extensions: 629
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 68,354,980
effective HSP length: 42
effective length of database: 60,596,110
effective search space used: 1696691080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)