Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_L14
(282 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9JI48|PLAC8_MOUSE Placenta-specific gene 8 protein (C15... 30 1.3
sp|Q9NZF1|PLAC8_HUMAN Placenta-specific gene 8 protein (C15... 29 2.9
sp|P04769|PLFR_MOUSE Proliferin-related protein precursor (... 29 3.8
sp|Q8V5U0|CATV_NPVHZ Viral cathepsin (V-cath) (Cysteine pro... 29 3.8
sp|P52667|ESTR_ACIAD HTH-type transcriptional regulator est... 28 6.5
>sp|Q9JI48|PLAC8_MOUSE Placenta-specific gene 8 protein (C15 protein) (Onzin)
Length = 112
Score = 30.4 bits (67), Expect = 1.3
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +1
Query: 133 QQQTIIVQTAPEQKLPKYRDWSSGLCGCCDDCTSC 237
Q T+IV + P+ +W + LC C DC C
Sbjct: 3 QAPTVIVTQPGFVRAPQNSNWQTSLCDCFSDCGVC 37
>sp|Q9NZF1|PLAC8_HUMAN Placenta-specific gene 8 protein (C15 protein)
Length = 115
Score = 29.3 bits (64), Expect = 2.9
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = +1
Query: 136 QQTIIVQTAP---EQKLPKYRDWSSGLCGCCDDCTSC 237
Q ++V T P P+ +W +G+C C DC C
Sbjct: 4 QAPVVVVTQPGVGPGPAPQNSNWQTGMCDCFSDCGVC 40
>sp|P04769|PLFR_MOUSE Proliferin-related protein precursor (PRP)
Length = 244
Score = 28.9 bits (63), Expect = 3.8
Identities = 21/58 (36%), Positives = 30/58 (51%)
Frame = -3
Query: 256 KRNEKIYKKCNRHSIHTIPNSNLDILEVFALVRFEQ*LFAVEFQQLHLLLVAQEPVEH 83
K E I K N S HT+P + + +E FE+ L V LH+LL +EP++H
Sbjct: 87 KSTENITKAFN--SCHTVPINVPETVEDVRKTSFEEFLKMV----LHMLLAWKEPLKH 138
>sp|Q8V5U0|CATV_NPVHZ Viral cathepsin (V-cath) (Cysteine proteinase) (CP)
Length = 367
Score = 28.9 bits (63), Expect = 3.8
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 15/66 (22%)
Frame = +1
Query: 67 NKF*FRAPPVLVQPTVNVTAGIQQ-----QTIIVQTAPEQKLPKYRDW----------SS 201
NKF + P ++ + Q + IV+ AP+ +LP Y DW
Sbjct: 115 NKFSDKTPDEVLHSNTGFFLNLSQHYTLCENRIVKGAPDIRLPDYYDWRDTNKVTPIKDQ 174
Query: 202 GLCGCC 219
G+CG C
Sbjct: 175 GVCGSC 180
>sp|P52667|ESTR_ACIAD HTH-type transcriptional regulator estR (Esterase operon
transcriptional regulator)
Length = 301
Score = 28.1 bits (61), Expect = 6.5
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -3
Query: 247 EKIYKKCNRHSIHTIPNSNLDILEVFALVRFEQ 149
E +Y CN+H H++ +LD L++ L+ E+
Sbjct: 167 ENLYLVCNKHDKHSVNAHSLDDLDLSRLMLLEE 199
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,387,996
Number of Sequences: 369166
Number of extensions: 555502
Number of successful extensions: 1901
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1900
length of database: 68,354,980
effective HSP length: 63
effective length of database: 56,716,675
effective search space used: 1701500250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)