Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_L03
(632 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9CZB0|C560_MOUSE Succinate dehydrogenase cytochrome b56... 114 2e-25
sp|P70097|C560_CRIGR Succinate dehydrogenase cytochrome b56... 113 4e-25
sp|Q99643|C560_HUMAN Succinate dehydrogenase cytochrome b56... 112 8e-25
sp|P35720|C560_BOVIN Succinate dehydrogenase cytochrome b56... 104 2e-22
sp|P41955|C560_CAEBR Succinate dehydrogenase cytochrome b56... 74 4e-13
sp|P41956|C560_CAEEL Succinate dehydrogenase cytochrome b56... 72 1e-12
sp|P41085|DHSC_RICPR Succinate dehydrogenase cytochrome b55... 56 9e-08
sp|Q92J99|DHSC_RICCN Succinate dehydrogenase cytochrome b55... 55 1e-07
sp|Q59659|DHSC_PARDE Succinate dehydrogenase cytochrome b55... 53 6e-07
sp|P80481|C560_RECAM Succinate dehydrogenase cytochrome b56... 51 3e-06
>sp|Q9CZB0|C560_MOUSE Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor (Integral membrane protein CII-3) (QPS1)
(QPs-1)
Length = 169
Score = 114 bits (286), Expect = 2e-25
Identities = 54/142 (38%), Positives = 82/142 (57%)
Frame = +2
Query: 116 SKYCSGTGEKVRLRAQTEMQDYWEKNLKGPRPYSPHLLIYKMELPMTTSLLHRGSGIAMA 295
++ C + A+ EM+ +W+KN RP SPHL IYK LPM S+ HRGSGIA++
Sbjct: 20 AQLCIRNAAPLGTTAKEEMERFWKKNTSSNRPLSPHLTIYKWSLPMALSVCHRGSGIALS 79
Query: 296 IAWGGLGCGAFFYTGHYAEIIHYLSSLELGPAIIFGAKLIMCWPLIFHYTNGMRHLAYDF 475
G A G++ + ++ SL LGP +I+ AK ++ +PL++H NG+RHL +D
Sbjct: 80 GGVSLFGLSALLLPGNFESYLMFVKSLCLGPTLIYSAKFVLVFPLMYHSLNGIRHLLWDL 139
Query: 476 AKGFDIPTTMRTGYIALALSVV 541
KG IP +G + L+V+
Sbjct: 140 GKGLAIPQVWLSGVAVVVLAVL 161
>sp|P70097|C560_CRIGR Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor (Integral membrane protein CII-3) (QPS1)
(QPs-1)
Length = 169
Score = 113 bits (283), Expect = 4e-25
Identities = 54/150 (36%), Positives = 85/150 (56%)
Frame = +2
Query: 116 SKYCSGTGEKVRLRAQTEMQDYWEKNLKGPRPYSPHLLIYKMELPMTTSLLHRGSGIAMA 295
S+ C + A+ EM+ +W KN RP SPHL IY+ LPM S+ HRG+G+A++
Sbjct: 20 SQICLRNAVPLGTTAKEEMERFWNKNTSSKRPVSPHLTIYRWSLPMVMSICHRGTGVALS 79
Query: 296 IAWGGLGCGAFFYTGHYAEIIHYLSSLELGPAIIFGAKLIMCWPLIFHYTNGMRHLAYDF 475
G A G++ + ++ SL LGPA+I AK ++ +PL++H NG+RHL +D
Sbjct: 80 GGVSLFGLSALLLPGNFESYLMFIKSLCLGPALIHSAKFVLVFPLMYHSLNGIRHLIWDL 139
Query: 476 AKGFDIPTTMRTGYIALALSVVIATLFASI 565
KG I ++G L L+V+ + A++
Sbjct: 140 GKGLSISQVYQSGVAVLMLAVLSSVGLAAM 169
>sp|Q99643|C560_HUMAN Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor (Integral membrane protein CII-3) (QPS1)
(QPs-1) (Succinate dehydrogenase complex subunit C)
(Succinate-ubiquinone oxidoreductase cytochrome B large
subunit) (CYBL)
Length = 169
Score = 112 bits (280), Expect = 8e-25
Identities = 52/128 (40%), Positives = 77/128 (60%)
Frame = +2
Query: 158 AQTEMQDYWEKNLKGPRPYSPHLLIYKMELPMTTSLLHRGSGIAMAIAWGGLGCGAFFYT 337
A+ EM+ +W KN+ RP SPH+ IY LPM S+ HRG+GIA++ G A
Sbjct: 34 AKEEMERFWNKNIGSNRPLSPHITIYSWSLPMAMSICHRGTGIALSAGVSLFGMSALLLP 93
Query: 338 GHYAEIIHYLSSLELGPAIIFGAKLIMCWPLIFHYTNGMRHLAYDFAKGFDIPTTMRTGY 517
G++ + + SL LGPA+I AK + +PL++H NG+RHL +D KG IP ++G
Sbjct: 94 GNFESYLELVKSLCLGPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGV 153
Query: 518 IALALSVV 541
+ L L+V+
Sbjct: 154 VVLVLTVL 161
>sp|P35720|C560_BOVIN Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor (Integral membrane protein CII-3) (QPS1)
(QPs-1) (Succinate dehydrogenase complex subunit C)
Length = 169
Score = 104 bits (259), Expect = 2e-22
Identities = 52/136 (38%), Positives = 78/136 (57%)
Frame = +2
Query: 158 AQTEMQDYWEKNLKGPRPYSPHLLIYKMELPMTTSLLHRGSGIAMAIAWGGLGCGAFFYT 337
A+ EM+ +W KN RP SPH+ IY LPM S+ HRG+GIA++ G A
Sbjct: 34 AKEEMERFWSKNTTLNRPLSPHISIYGWSLPMAMSICHRGTGIALSAGVSLFGLSALLVP 93
Query: 338 GHYAEIIHYLSSLELGPAIIFGAKLIMCWPLIFHYTNGMRHLAYDFAKGFDIPTTMRTGY 517
G + + ++ SL LGPA+I AK + +PL++H NG+RHL +D KG I ++G
Sbjct: 94 GSFESHLEFVKSLCLGPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLTISQLHQSGV 153
Query: 518 IALALSVVIATLFASI 565
L L+V+ + A++
Sbjct: 154 AVLVLTVLSSVGLAAM 169
>sp|P41955|C560_CAEBR Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor
Length = 184
Score = 73.6 bits (179), Expect = 4e-13
Identities = 50/146 (34%), Positives = 73/146 (50%), Gaps = 7/146 (4%)
Frame = +2
Query: 131 GTGEKVRLRAQTEMQ----DYWEKNLKGPRPYSPHLLIYKMELPMTTSLLHRGSGIAMA- 295
GT + A+T +Q +Y +K RP +PHL IY+ +L S HR SG MA
Sbjct: 23 GTSVVTKSEAKTPIQKFGWEYLKKQRDMKRPIAPHLTIYQPQLTWMLSGFHRISGCVMAG 82
Query: 296 -IAWGGLGCGAFFYTGHYAEIIHYLSSLELGPAIIFGAKLIMCWPLIFHYTNGMRHLAYD 472
+ GGLG + + Y+ L A+ K I+ +P+IFH NG+R L +D
Sbjct: 83 TLLVGGLGFAVLPLD--FTTFVEYIRGWNLPCAVTAVFKYIIAFPIIFHTLNGIRFLGFD 140
Query: 473 FAKGFD-IPTTMRTGYIALALSVVIA 547
AKG D I ++G++ +S VIA
Sbjct: 141 LAKGVDNIGQVYKSGWLVFGVSAVIA 166
>sp|P41956|C560_CAEEL Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor
Length = 182
Score = 72.0 bits (175), Expect = 1e-12
Identities = 48/146 (32%), Positives = 76/146 (52%), Gaps = 7/146 (4%)
Frame = +2
Query: 131 GTGEKVRLRAQTEMQDY-WEKNLKGP---RPYSPHLLIYKMELPMTTSLLHRGSGIAMA- 295
GT + A+T +Q + WE LK RP +PHL +Y+ +L S HR SG MA
Sbjct: 23 GTSIVTKSEAKTPIQKFGWEYLLKQRSKNRPIAPHLTVYQPQLTWMLSGFHRISGCVMAG 82
Query: 296 -IAWGGLGCGAFFYTGHYAEIIHYLSSLELGPAIIFGAKLIMCWPLIFHYTNGMRHLAYD 472
+ GG+G + + + ++ S L A+ K I+ +P+IFH NG+R L +D
Sbjct: 83 TLLVGGIGFAVLPFD--FTAFVDFIRSWNLPCAVTAVFKYIIAFPIIFHTLNGIRFLGFD 140
Query: 473 FAKGF-DIPTTMRTGYIALALSVVIA 547
AKG ++ ++GY+ LS ++A
Sbjct: 141 LAKGVNNVGQIYKSGYLVSGLSAILA 166
>sp|P41085|DHSC_RICPR Succinate dehydrogenase cytochrome b556 subunit (Cytochrome b-556)
Length = 124
Score = 55.8 bits (133), Expect = 9e-08
Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 3/126 (2%)
Frame = +2
Query: 185 EKNLKGPRPYSPHLLIYKMELPMTTSLLHRGSGIAMAIAWGGLGCGAFF--YTGHYAEII 358
++ + RP SPHL IYK ++ T S+LHR +G+A+ L Y +Y
Sbjct: 5 KQEIYNKRPTSPHLTIYKPQISSTLSILHRMTGVALFFVVSILVWWLILSKYDNNY---- 60
Query: 359 HYLSSLELGPAIIFGAKLI-MCWPLIFHYTNGMRHLAYDFAKGFDIPTTMRTGYIALALS 535
L+L I L+ + +H NG+RHL +D GF I TG+ + S
Sbjct: 61 -----LQLASCCIIKICLVAFSYSWCYHLCNGIRHLFWDIGYGFSIKAVNITGWCVVVCS 115
Query: 536 VVIATL 553
+++ L
Sbjct: 116 ILLTML 121
>sp|Q92J99|DHSC_RICCN Succinate dehydrogenase cytochrome b556 subunit (Cytochrome b-556)
Length = 124
Score = 55.1 bits (131), Expect = 1e-07
Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 3/126 (2%)
Frame = +2
Query: 185 EKNLKGPRPYSPHLLIYKMELPMTTSLLHRGSGIAMAIAWGGLGCGAFF--YTGHYAEII 358
++ + RP SPHL IYK ++ T S+L+R +G+A+ A L Y +Y
Sbjct: 5 KQEIYNKRPTSPHLTIYKPQISSTLSILYRMTGVALFFAVSILVWWLILSKYDNNY---- 60
Query: 359 HYLSSLELGPAIIFGAKLI-MCWPLIFHYTNGMRHLAYDFAKGFDIPTTMRTGYIALALS 535
L+L I L+ + + +H NG+RHL +D GF I TG+ + S
Sbjct: 61 -----LQLAECCIIKICLVAVSYAWFYHLCNGIRHLFWDIGYGFSIKLVNITGWCVVVGS 115
Query: 536 VVIATL 553
V++ L
Sbjct: 116 VLLTVL 121
>sp|Q59659|DHSC_PARDE Succinate dehydrogenase cytochrome b556 subunit (Cytochrome b-556)
Length = 130
Score = 53.1 bits (126), Expect = 6e-07
Identities = 40/124 (32%), Positives = 61/124 (49%), Gaps = 5/124 (4%)
Frame = +2
Query: 197 KGPRPYSPHLLIYKMELPMTTSLLHRGSGIAMA-----IAWGGLGCGAFFYTGHYAEIIH 361
+G RP SPHL +Y++ L TS++ R +G A+ I W + A G +A
Sbjct: 6 RGNRPLSPHLQVYRLPLAAITSIMTRITGHALVAGIVLITWWLVA--AVTSPGAFA-CAD 62
Query: 362 YLSSLELGPAIIFGAKLIMCWPLIFHYTNGMRHLAYDFAKGFDIPTTMRTGYIALALSVV 541
++ LG I+ G+ W L +H G+RHL YD G +I ++ +A SVV
Sbjct: 63 WVVRSWLGFIILTGSM----WALWYHLLAGLRHLFYDAGYGLEIEQAHKSSQALIAGSVV 118
Query: 542 IATL 553
+A L
Sbjct: 119 LAVL 122
>sp|P80481|C560_RECAM Succinate dehydrogenase cytochrome b560 subunit (Succinate
dehydrogenase, subunit III)
Length = 144
Score = 50.8 bits (120), Expect = 3e-06
Identities = 37/128 (28%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Frame = +2
Query: 191 NLKGPRPYSPHLLIYKMELPMTTSLLHR--GSGIAMAIAWGGLGCGAF-FYTGHYAEIIH 361
N+ RP SPHL IYK+++ T S+ HR G +A+ + + L F+ YA
Sbjct: 16 NMNINRPISPHLTIYKLQITNTLSIFHRITGGVLALTLCFFILILKMLNFHLSSYAFYSI 75
Query: 362 YLSSLELGPAIIFGAKLIMCWPLIFHYTNGMRHLAYDFAKGFDIPTTMRTGYIALALSVV 541
+ + + + + +H G+RHL +D +I TGYI L L+ +
Sbjct: 76 AYTLNQYSGFLFIAISFFLLLFIFYHLFAGLRHLVWDAGYALEIENVYLTGYIMLGLAFL 135
Query: 542 IATLFASI 565
TL A I
Sbjct: 136 F-TLIAWI 142
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,392,631
Number of Sequences: 369166
Number of extensions: 1467010
Number of successful extensions: 3439
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3424
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5072399280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)