Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_K17
(817 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9UTJ3|MEU1_SCHPO Meiotic expression up-regulated protei... 32 1.6
sp|P38190|YBF3_YEAST Very hypothetical 13.2 kDa protein in ... 32 2.7
sp|P12326|VP9_WTV Structural protein P9 (Capsomere protein ... 31 3.6
sp|P31611|VP9_WTVNJ Structural protein P9 (Capsomere protei... 31 3.6
sp|O69054|PTXD_PSEST Phosphonate dehydrogenase (NAD-depende... 31 3.6
sp|P24063|ITAL_MOUSE Integrin alpha-L precursor (Leukocyte ... 30 6.1
sp|Q9F411|TRMB_MYCHO tRNA (guanine-N(7)-)-methyltransferase... 30 6.1
sp|Q9Z6W5|MUTS_CHLPN DNA mismatch repair protein mutS 30 7.9
>sp|Q9UTJ3|MEU1_SCHPO Meiotic expression up-regulated protein 1/2
Length = 776
Score = 32.3 bits (72), Expect = 1.6
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 5/98 (5%)
Frame = +1
Query: 313 KEDKSNTKMVHVNLKLCFRAFSNI-----IDSHKDSVNELTADSVARERWNQQFFDDLKN 477
K DKS K + L++ A N ID K +EL + N+ F DD +
Sbjct: 137 KLDKSFRKNMEDELRITRLASENNVLISRIDRTKRHFSELFTQKQMLQLQNENFKDDYEK 196
Query: 478 FAEKNQTHYEQWGAYDGRLIIDRHDEYQLKNGKGYRDH 591
E+N+ Y++ ++ ++ + + LK ++DH
Sbjct: 197 IKEENKRLYKERKSFLSKIEKSACEIHDLKESDSFKDH 234
>sp|P38190|YBF3_YEAST Very hypothetical 13.2 kDa protein in PTC3-SAS3 intergenic region
Length = 124
Score = 31.6 bits (70), Expect = 2.7
Identities = 19/58 (32%), Positives = 31/58 (53%)
Frame = -2
Query: 747 SSTIWSDVISKSDMTQSRSATNTTQAETSSILHMPKYYSISLILTPITNSKTVIPITF 574
SS+ SD+ S S S S ++ + +SS+ P Y S+S + + SK IP++F
Sbjct: 66 SSSFSSDICSSS---MSSSRVKSSSSSSSSLAFSPTYNSVSTSFSTSSCSKLDIPVSF 120
>sp|P12326|VP9_WTV Structural protein P9 (Capsomere protein P9) (Protein Pns11)
Length = 313
Score = 31.2 bits (69), Expect = 3.6
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -2
Query: 741 TIWSDVISKSDMTQSRSATNTTQAETSSIL 652
TIW+DVIS D+ + S TT A+ S+ L
Sbjct: 239 TIWADVISDGDVVEETSTEATTSAQHSTAL 268
>sp|P31611|VP9_WTVNJ Structural protein P9 (Capsomere protein P9) (Protein Pns11)
Length = 313
Score = 31.2 bits (69), Expect = 3.6
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -2
Query: 741 TIWSDVISKSDMTQSRSATNTTQAETSSIL 652
TIW+DVIS D+ + S TT A+ S+ L
Sbjct: 239 TIWADVISDGDVAEETSTEATTSAQHSTAL 268
>sp|O69054|PTXD_PSEST Phosphonate dehydrogenase (NAD-dependent phosphite dehydrogenase)
Length = 336
Score = 31.2 bits (69), Expect = 3.6
Identities = 19/63 (30%), Positives = 33/63 (52%)
Frame = +1
Query: 61 KLTTNQSDNAKTVDVIIRVARRKDRVLEFWMAIKQDQEPLLVHPNCPETSITNCSPNGWD 240
+L TNQ+D+ T + I+R R ++ F M + D + L CPE + C+ G+D
Sbjct: 24 ELMTNQTDSTLTREEILRRCRDAQAMMAF-MPDRVDADFLQA---CPELRVVGCALKGFD 79
Query: 241 SIN 249
+ +
Sbjct: 80 NFD 82
>sp|P24063|ITAL_MOUSE Integrin alpha-L precursor (Leukocyte adhesion glycoprotein LFA-1
alpha chain) (LFA-1A) (Leukocyte function associated
molecule 1, alpha chain) (CD11a)
Length = 1163
Score = 30.4 bits (67), Expect = 6.1
Identities = 13/60 (21%), Positives = 27/60 (45%)
Frame = -2
Query: 756 NRLSSTIWSDVISKSDMTQSRSATNTTQAETSSILHMPKYYSISLILTPITNSKTVIPIT 577
N L ++ W D + + + ++ Q + S+ H+P Y ++++ NS I T
Sbjct: 876 NTLLNSSWEDFVELNGTVHCENENSSLQEDNSAATHIPVLYPVNILTKEQENSTLYISFT 935
>sp|Q9F411|TRMB_MYCHO tRNA (guanine-N(7)-)-methyltransferase
(tRNA(m7G46)-methyltransferase)
Length = 202
Score = 30.4 bits (67), Expect = 6.1
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Frame = -1
Query: 661 LHSPYAQILLHISDIDSNYEFQNCDPDNLSHFSID------IRRVYQ*SNVHHMLPIVHN 500
++ + +I ++ D D F+ D D L F+ID + +YQ S++HH + N
Sbjct: 120 VYRDFLKIYQNVLDKDGVVYFKT-DNDMLYQFAIDELKEINAKIIYQTSDLHHCNFKIEN 178
Query: 499 VFDFFLQSFSNHQKTVDSI 443
VF + + F+ K ++ I
Sbjct: 179 VFTDYEEKFNKLNKNINFI 197
>sp|Q9Z6W5|MUTS_CHLPN DNA mismatch repair protein mutS
Length = 828
Score = 30.0 bits (66), Expect = 7.9
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 11/84 (13%)
Frame = +1
Query: 280 EKWTVKYHGWLKEDKSNTKMVHVNLKLCF-RAFSNIIDSHKDSVNELTADSVAR------ 438
++W +Y ++++ K LK+CF +A I+ + +L D + R
Sbjct: 452 QEWIWEYQERIRKETGIKK-----LKICFAQALGYYIEVSSEFAPQLPKDFIRRQSRLHA 506
Query: 439 ERWN----QQFFDDLKNFAEKNQT 498
ER+ QQF DD+ N +EK QT
Sbjct: 507 ERFTTIELQQFQDDMSNISEKLQT 530
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,782,258
Number of Sequences: 369166
Number of extensions: 2184681
Number of successful extensions: 5648
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5643
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7811456130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)