Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_K09
(888 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P55726|Y4YR_RHISN Probable translocation protein y4yR 31 5.3
sp|P43729|LEPA_HAEIN GTP-binding protein lepA 30 6.9
sp|P57806|LEPA_PASMU GTP-binding protein lepA 30 6.9
sp|Q9P6S3|YNL4_SCHPO Hypothetical protein C27.04 in chromos... 30 9.0
sp|Q7VL73|LEPA_HAEDU GTP-binding protein lepA 30 9.0
>sp|P55726|Y4YR_RHISN Probable translocation protein y4yR
Length = 697
Score = 30.8 bits (68), Expect = 5.3
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = -2
Query: 464 VEEKHSGHLLAIFLFYHNLPSYTLVMSMHQTVHVHLPQINGLSR*HGINGR 312
VE+ H L A + +H+ PS L M +H T+ H P++ G+ + GR
Sbjct: 449 VEQSHEPALKAAGIRHHS-PSELLAMRVHATLTCHAPRLVGIQETRQLLGR 498
>sp|P43729|LEPA_HAEIN GTP-binding protein lepA
Length = 598
Score = 30.4 bits (67), Expect = 6.9
Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 18/94 (19%)
Frame = +2
Query: 587 ENLQLFSTSAFLEDSKQLLCYPMRNDCE-----------IFLLDMEKKR-------SVTI 712
+N++ FS A ++ K L + C + +D+E++R SVT+
Sbjct: 2 KNIRNFSIIAHIDHGKSTLSDRLIQTCGGLSDREMEAQVLDSMDLERERGITIKAQSVTL 61
Query: 713 SEKIKDGKYAKIHYGDLDTPPETCVIFQYDISRT 814
+ K KDG+ ++++ +DTP V F Y++SR+
Sbjct: 62 NYKAKDGETYQLNF--IDTPGH--VDFSYEVSRS 91
>sp|P57806|LEPA_PASMU GTP-binding protein lepA
Length = 598
Score = 30.4 bits (67), Expect = 6.9
Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 18/94 (19%)
Frame = +2
Query: 587 ENLQLFSTSAFLEDSKQLLCYPMRNDCE-----------IFLLDMEKKR-------SVTI 712
+N++ FS A ++ K L + C + +D+E++R SVT+
Sbjct: 2 KNIRNFSIIAHIDHGKSTLSDRLIQTCGGLSDREMEAQVLDSMDLERERGITIKAQSVTL 61
Query: 713 SEKIKDGKYAKIHYGDLDTPPETCVIFQYDISRT 814
+ K KDG+ ++++ +DTP V F Y++SR+
Sbjct: 62 NYKAKDGETYQLNF--IDTPGH--VDFSYEVSRS 91
>sp|Q9P6S3|YNL4_SCHPO Hypothetical protein C27.04 in chromosome II
Length = 1052
Score = 30.0 bits (66), Expect = 9.0
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +2
Query: 521 DFCVTETIQEIKQRIRTK---FHNFENLQLFSTSAFLEDSKQLLCYPMRNDCEIFLLDME 691
D TE EI Q I T+ H +N+ S S L + ++ MRNDCE FL E
Sbjct: 972 DNITTENSSEIVQVIHTEDDSLHFDDNVSTDSVS--LGNKSRISMDSMRNDCEAFLPKKE 1029
Query: 692 K 694
K
Sbjct: 1030 K 1030
>sp|Q7VL73|LEPA_HAEDU GTP-binding protein lepA
Length = 597
Score = 30.0 bits (66), Expect = 9.0
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 18/94 (19%)
Frame = +2
Query: 587 ENLQLFSTSAFLEDSKQLLCYPMRNDCE-----------IFLLDMEKKR-------SVTI 712
+N++ FS A ++ K L + C + +D+E++R SVT+
Sbjct: 2 QNIRNFSIIAHIDHGKSTLSDRLIQTCGGLSDREMEAQVLDSMDLERERGITIKAQSVTL 61
Query: 713 SEKIKDGKYAKIHYGDLDTPPETCVIFQYDISRT 814
K KDG+ ++++ +DTP V F Y++SR+
Sbjct: 62 HYKAKDGETYQLNF--IDTPGH--VDFSYEVSRS 91
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,152,105
Number of Sequences: 369166
Number of extensions: 2040261
Number of successful extensions: 4825
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4824
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8886314050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)