Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_J22
(868 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P92176|ACT2_LUMTE Actin-2 540 e-153
sp|Q964E0|ACTC_BIOTE Actin, cytoplasmic 540 e-153
sp|Q964E1|ACTC_BIOOB Actin, cytoplasmic 540 e-153
sp|P10984|ACT2_CAEEL Actin-2 539 e-153
sp|Q964D9|ACTC_HELTI Actin, cytoplasmic 539 e-153
sp|Q964E2|ACTC_BIOPF Actin, cytoplasmic 539 e-153
sp|Q964E3|ACTC_BIOAL Actin, cytoplasmic 539 e-153
sp|P30163|ACT2_ONCVO Actin-2 539 e-153
sp|P30162|ACT1_ONCVO Actin-1 539 e-153
sp|P12716|ACTC_PISOC Actin, cytoplasmic 538 e-153
>sp|P92176|ACT2_LUMTE Actin-2
Length = 376
Score = 540 bits (1390), Expect = e-153
Identities = 265/274 (96%), Positives = 270/274 (98%)
Frame = +3
Query: 18 EDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 197
EDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR
Sbjct: 4 EDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 63
Query: 198 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 377
GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI
Sbjct: 64 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 123
Query: 378 MFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAG 557
MFETFN+PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAG
Sbjct: 124 MFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAG 183
Query: 558 RDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYIALDFDAEMRTASASSSLEKSYEL 737
RDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCY+ALDF+ EM TASASSSLEKSYEL
Sbjct: 184 RDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMNTASASSSLEKSYEL 243
Query: 738 PDGQVITIGNERFRCPEALFQPSFLGLESVGIHE 839
PDGQVITIGNERFRCPEA+F SFLG+ESVGIHE
Sbjct: 244 PDGQVITIGNERFRCPEAMFHASFLGMESVGIHE 277
>sp|Q964E0|ACTC_BIOTE Actin, cytoplasmic
Length = 376
Score = 540 bits (1390), Expect = e-153
Identities = 263/274 (95%), Positives = 270/274 (98%)
Frame = +3
Query: 18 EDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 197
EDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR
Sbjct: 4 EDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 63
Query: 198 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 377
GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI
Sbjct: 64 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 123
Query: 378 MFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAG 557
MFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAI+RLDLAG
Sbjct: 124 MFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAG 183
Query: 558 RDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYIALDFDAEMRTASASSSLEKSYEL 737
RDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCY+ALDF+ EM+TAS SSSLEKSYEL
Sbjct: 184 RDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTASTSSSLEKSYEL 243
Query: 738 PDGQVITIGNERFRCPEALFQPSFLGLESVGIHE 839
PDGQVITIGNERFRCPEA+FQPSFLG+E+ GIHE
Sbjct: 244 PDGQVITIGNERFRCPEAMFQPSFLGMEAAGIHE 277
>sp|Q964E1|ACTC_BIOOB Actin, cytoplasmic
Length = 376
Score = 540 bits (1390), Expect = e-153
Identities = 263/274 (95%), Positives = 271/274 (98%)
Frame = +3
Query: 18 EDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 197
EDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR
Sbjct: 4 EDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 63
Query: 198 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 377
GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI
Sbjct: 64 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 123
Query: 378 MFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAG 557
MFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAI+RLDLAG
Sbjct: 124 MFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAG 183
Query: 558 RDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYIALDFDAEMRTASASSSLEKSYEL 737
RDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCY+ALDF+ EM+TA++SSSLEKSYEL
Sbjct: 184 RDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTATSSSSLEKSYEL 243
Query: 738 PDGQVITIGNERFRCPEALFQPSFLGLESVGIHE 839
PDGQVITIGNERFRCPEALFQPSFLG+E+ GIHE
Sbjct: 244 PDGQVITIGNERFRCPEALFQPSFLGMEAAGIHE 277
>sp|P10984|ACT2_CAEEL Actin-2
Length = 376
Score = 539 bits (1389), Expect = e-153
Identities = 263/274 (95%), Positives = 270/274 (98%)
Frame = +3
Query: 18 EDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 197
+DVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR
Sbjct: 4 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 63
Query: 198 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 377
GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI
Sbjct: 64 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 123
Query: 378 MFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAG 557
MFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAG
Sbjct: 124 MFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAG 183
Query: 558 RDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYIALDFDAEMRTASASSSLEKSYEL 737
RDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCY+ALDF+ EM TA++SSSLEKSYEL
Sbjct: 184 RDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYEL 243
Query: 738 PDGQVITIGNERFRCPEALFQPSFLGLESVGIHE 839
PDGQVIT+GNERFRCPEALFQPSFLG+ES GIHE
Sbjct: 244 PDGQVITVGNERFRCPEALFQPSFLGMESAGIHE 277
>sp|Q964D9|ACTC_HELTI Actin, cytoplasmic
Length = 376
Score = 539 bits (1388), Expect = e-153
Identities = 262/274 (95%), Positives = 270/274 (98%)
Frame = +3
Query: 18 EDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 197
EDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR
Sbjct: 4 EDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 63
Query: 198 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 377
GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI
Sbjct: 64 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 123
Query: 378 MFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAG 557
MFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTHTVPIYEGYALPHAI+RLDLAG
Sbjct: 124 MFETFNTPAMYVAIQAVLSLYASGRTTGIVIDSGDGVTHTVPIYEGYALPHAIMRLDLAG 183
Query: 558 RDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYIALDFDAEMRTASASSSLEKSYEL 737
RDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCY+ALDF+ EM+TAS SSSLEKSYEL
Sbjct: 184 RDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTASTSSSLEKSYEL 243
Query: 738 PDGQVITIGNERFRCPEALFQPSFLGLESVGIHE 839
PDGQVITIGNERFRCPEA++QPSFLG+ES GIHE
Sbjct: 244 PDGQVITIGNERFRCPEAMYQPSFLGMESAGIHE 277
>sp|Q964E2|ACTC_BIOPF Actin, cytoplasmic
Length = 376
Score = 539 bits (1388), Expect = e-153
Identities = 263/274 (95%), Positives = 269/274 (98%)
Frame = +3
Query: 18 EDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 197
EDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR
Sbjct: 4 EDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 63
Query: 198 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 377
GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI
Sbjct: 64 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 123
Query: 378 MFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAG 557
MFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAI+RLDLAG
Sbjct: 124 MFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAG 183
Query: 558 RDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYIALDFDAEMRTASASSSLEKSYEL 737
RDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCY+ALDF+ EM TA+ SSSLEKSYEL
Sbjct: 184 RDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMHTAATSSSLEKSYEL 243
Query: 738 PDGQVITIGNERFRCPEALFQPSFLGLESVGIHE 839
PDGQVITIGNERFRCPEA+FQPSFLG+ES GIHE
Sbjct: 244 PDGQVITIGNERFRCPEAVFQPSFLGMESAGIHE 277
>sp|Q964E3|ACTC_BIOAL Actin, cytoplasmic
Length = 376
Score = 539 bits (1388), Expect = e-153
Identities = 262/274 (95%), Positives = 270/274 (98%)
Frame = +3
Query: 18 EDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 197
EDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR
Sbjct: 4 EDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 63
Query: 198 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 377
GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI
Sbjct: 64 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 123
Query: 378 MFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAG 557
MFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTHTVPIYEGYALPHAI+RLDLAG
Sbjct: 124 MFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAIMRLDLAG 183
Query: 558 RDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYIALDFDAEMRTASASSSLEKSYEL 737
RDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCY+ALDF+ EM+TAS SSSLEKSYEL
Sbjct: 184 RDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTASTSSSLEKSYEL 243
Query: 738 PDGQVITIGNERFRCPEALFQPSFLGLESVGIHE 839
PDGQVITIGNERFRCPEA+FQPSFLG+E+ GIHE
Sbjct: 244 PDGQVITIGNERFRCPEAMFQPSFLGMEAAGIHE 277
>sp|P30163|ACT2_ONCVO Actin-2
Length = 376
Score = 539 bits (1388), Expect = e-153
Identities = 263/274 (95%), Positives = 270/274 (98%)
Frame = +3
Query: 18 EDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 197
E+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR
Sbjct: 4 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 63
Query: 198 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 377
GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI
Sbjct: 64 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 123
Query: 378 MFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAG 557
MFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAG
Sbjct: 124 MFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAG 183
Query: 558 RDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYIALDFDAEMRTASASSSLEKSYEL 737
RDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCY+ALDF+ EM TA++SSSLEKSYEL
Sbjct: 184 RDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYEL 243
Query: 738 PDGQVITIGNERFRCPEALFQPSFLGLESVGIHE 839
PDGQVIT+GNERFRCPEALFQPSFLG+ES GIHE
Sbjct: 244 PDGQVITVGNERFRCPEALFQPSFLGMESAGIHE 277
>sp|P30162|ACT1_ONCVO Actin-1
Length = 376
Score = 539 bits (1388), Expect = e-153
Identities = 263/274 (95%), Positives = 270/274 (98%)
Frame = +3
Query: 18 EDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 197
E+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR
Sbjct: 4 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 63
Query: 198 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 377
GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI
Sbjct: 64 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 123
Query: 378 MFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAG 557
MFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAG
Sbjct: 124 MFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAG 183
Query: 558 RDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYIALDFDAEMRTASASSSLEKSYEL 737
RDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCY+ALDF+ EM TA++SSSLEKSYEL
Sbjct: 184 RDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYEL 243
Query: 738 PDGQVITIGNERFRCPEALFQPSFLGLESVGIHE 839
PDGQVIT+GNERFRCPEALFQPSFLG+ES GIHE
Sbjct: 244 PDGQVITVGNERFRCPEALFQPSFLGMESAGIHE 277
>sp|P12716|ACTC_PISOC Actin, cytoplasmic
Length = 376
Score = 538 bits (1387), Expect = e-153
Identities = 263/274 (95%), Positives = 270/274 (98%)
Frame = +3
Query: 18 EDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 197
EDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR
Sbjct: 4 EDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 63
Query: 198 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 377
GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI
Sbjct: 64 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 123
Query: 378 MFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAG 557
MFETFN PAMYVAIQAVLSLYASGRTTGIV DSGDGV+HTVPIYEGYALPHAILRLDLAG
Sbjct: 124 MFETFNTPAMYVAIQAVLSLYASGRTTGIVFDSGDGVSHTVPIYEGYALPHAILRLDLAG 183
Query: 558 RDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYIALDFDAEMRTASASSSLEKSYEL 737
RDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCY+ALDF+ EM+TA++SSSLEKSYEL
Sbjct: 184 RDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTAASSSSLEKSYEL 243
Query: 738 PDGQVITIGNERFRCPEALFQPSFLGLESVGIHE 839
PDGQVITIGNERFRCPEALFQPSFLG+ES GIHE
Sbjct: 244 PDGQVITIGNERFRCPEALFQPSFLGMESAGIHE 277
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,921,079
Number of Sequences: 369166
Number of extensions: 2168587
Number of successful extensions: 7441
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7284
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8550075140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)