Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_J12
(341 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P26519|G3PC_PETCR Glyceraldehyde-3-phosphate dehydrogena... 113 2e-25
sp|P26988|G3P_PHYIN Glyceraldehyde-3-phosphate dehydrogenas... 112 3e-25
sp|P20287|G3P_SCHMA Glyceraldehyde-3-phosphate dehydrogenas... 112 3e-25
sp|Q39769|G3PC_GINBI Glyceraldehyde-3-phosphate dehydrogena... 110 8e-25
sp|Q8NK47|G3P_RHIMI Glyceraldehyde-3-phosphate dehydrogenas... 110 8e-25
sp|P08439|G3P_ZYGRO Glyceraldehyde-3-phosphate dehydrogenas... 110 8e-25
sp|P00354|G3P1_HUMAN Glyceraldehyde-3-phosphate dehydrogena... 110 1e-24
sp|P56649|G3P_PALVE Glyceraldehyde-3-phosphate dehydrogenas... 110 1e-24
sp|P34783|G3P_ATRNU Glyceraldehyde-3-phosphate dehydrogenas... 110 1e-24
sp|P34923|G3PC_PHYPA Glyceraldehyde-3-phosphate dehydrogena... 110 1e-24
>sp|P26519|G3PC_PETCR Glyceraldehyde-3-phosphate dehydrogenase, cytosolic
Length = 336
Score = 113 bits (282), Expect = 2e-25
Identities = 54/75 (72%), Positives = 64/75 (85%)
Frame = +2
Query: 2 KAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFDAKAGIQLTDTFVKLVAWYDNEY 181
KAAIKH SET++KGIL YTE++VVS DF GD SSIFDAKAGI L FVK+V+WYDNE+
Sbjct: 260 KAAIKHESETSLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALNGNFVKVVSWYDNEW 319
Query: 182 GYSCRVIDLIQHMST 226
GYS RVIDLI+HM++
Sbjct: 320 GYSNRVIDLIRHMAS 334
>sp|P26988|G3P_PHYIN Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 332
Score = 112 bits (280), Expect = 3e-25
Identities = 55/73 (75%), Positives = 62/73 (84%)
Frame = +2
Query: 2 KAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFDAKAGIQLTDTFVKLVAWYDNEY 181
KAAIK ASE MKGIL YTE+ VVS DF GD +SSIFDA+AGI LTD FVKLV+WYDNE+
Sbjct: 256 KAAIKSASENEMKGILGYTEKAVVSSDFIGDSHSSIFDAEAGIALTDDFVKLVSWYDNEW 315
Query: 182 GYSCRVIDLIQHM 220
GYS RV+DLI+HM
Sbjct: 316 GYSSRVLDLIEHM 328
>sp|P20287|G3P_SCHMA Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (Major larval
surface antigen) (P-37)
Length = 338
Score = 112 bits (280), Expect = 3e-25
Identities = 53/78 (67%), Positives = 62/78 (79%)
Frame = +2
Query: 2 KAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFDAKAGIQLTDTFVKLVAWYDNEY 181
KAA+K A+ +KGIL YTE+EVVS DF G +SSIFDAKAGI L + FVKLV+WYDNE+
Sbjct: 260 KAAVKAAASGPLKGILEYTEDEVVSSDFVGSTSSSIFDAKAGISLNNNFVKLVSWYDNEF 319
Query: 182 GYSCRVIDLIQHMSTKDH 235
GYSCRV+DLI HM DH
Sbjct: 320 GYSCRVVDLITHMHKVDH 337
>sp|Q39769|G3PC_GINBI Glyceraldehyde-3-phosphate dehydrogenase, cytosolic
Length = 340
Score = 110 bits (276), Expect = 8e-25
Identities = 54/75 (72%), Positives = 63/75 (84%)
Frame = +2
Query: 2 KAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFDAKAGIQLTDTFVKLVAWYDNEY 181
KAAIK SE +KGIL YTE++VVS DF GD+ SSIFDAKAGI L+D FVKLV+WYDNE+
Sbjct: 264 KAAIKEESEGKLKGILGYTEDDVVSTDFIGDNRSSIFDAKAGIALSDNFVKLVSWYDNEW 323
Query: 182 GYSCRVIDLIQHMST 226
GYS RVIDLI HM++
Sbjct: 324 GYSSRVIDLIVHMAS 338
>sp|Q8NK47|G3P_RHIMI Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 336
Score = 110 bits (276), Expect = 8e-25
Identities = 53/77 (68%), Positives = 63/77 (81%)
Frame = +2
Query: 2 KAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFDAKAGIQLTDTFVKLVAWYDNEY 181
KAAIK ASE ++KGIL YTE+EVVS DF GD +SSIFDAKAGI L FVKL++WYDNEY
Sbjct: 257 KAAIKKASEGSLKGILGYTEDEVVSTDFIGDSHSSIFDAKAGISLNPNFVKLISWYDNEY 316
Query: 182 GYSCRVIDLIQHMSTKD 232
GYS RV+DL+ H++ D
Sbjct: 317 GYSTRVVDLLVHIAKVD 333
>sp|P08439|G3P_ZYGRO Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 110 bits (276), Expect = 8e-25
Identities = 52/74 (70%), Positives = 64/74 (86%)
Frame = +2
Query: 2 KAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFDAKAGIQLTDTFVKLVAWYDNEY 181
KAA+K ASE +MKGIL YTE++VVS DF GD +SSI DA AGIQLT TFVKLV+WYDNE+
Sbjct: 257 KAALKKASEGSMKGILGYTEDDVVSSDFLGDAHSSIVDAAAGIQLTPTFVKLVSWYDNEF 316
Query: 182 GYSCRVIDLIQHMS 223
GYS RV+DL++H++
Sbjct: 317 GYSTRVVDLVEHVA 330
>sp|P00354|G3P1_HUMAN Glyceraldehyde-3-phosphate dehydrogenase, muscle (GAPDH)
Length = 334
Score = 110 bits (275), Expect = 1e-24
Identities = 51/77 (66%), Positives = 64/77 (83%)
Frame = +2
Query: 2 KAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFDAKAGIQLTDTFVKLVAWYDNEY 181
K +K ASE +KGIL YTE+EVVS DF G ++SSIFDA AGI+L DTFVKLV+WYDNE+
Sbjct: 258 KKVVKEASEGPLKGILGYTEDEVVSDDFNGSNHSSIFDAGAGIELNDTFVKLVSWYDNEF 317
Query: 182 GYSCRVIDLIQHMSTKD 232
GYS RV+DL+ HM++K+
Sbjct: 318 GYSERVVDLMAHMASKE 334
>sp|P56649|G3P_PALVE Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 110 bits (275), Expect = 1e-24
Identities = 53/77 (68%), Positives = 65/77 (84%)
Frame = +2
Query: 2 KAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFDAKAGIQLTDTFVKLVAWYDNEY 181
KAA+K ASE ++G+L YTE++VVS DF GD+ SSIFDAKAGIQL+ TFVK+V+WYDNE+
Sbjct: 255 KAAMKAASEGPLQGVLGYTEDDVVSCDFTGDNRSSIFDAKAGIQLSKTFVKVVSWYDNEF 314
Query: 182 GYSCRVIDLIQHMSTKD 232
GYS RVIDLI+HM D
Sbjct: 315 GYSQRVIDLIKHMQKVD 331
>sp|P34783|G3P_ATRNU Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 360
Score = 110 bits (274), Expect = 1e-24
Identities = 54/74 (72%), Positives = 61/74 (82%)
Frame = +2
Query: 2 KAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFDAKAGIQLTDTFVKLVAWYDNEY 181
KAAIK SE MKGIL YTE++VVS DF GD+ SSIFDAKAGI L FVKLV+WYDNE+
Sbjct: 261 KAAIKEESEGKMKGILGYTEDDVVSTDFVGDNRSSIFDAKAGICLNGNFVKLVSWYDNEW 320
Query: 182 GYSCRVIDLIQHMS 223
GYS RV+DLI+HMS
Sbjct: 321 GYSSRVVDLIRHMS 334
>sp|P34923|G3PC_PHYPA Glyceraldehyde-3-phosphate dehydrogenase, cytosolic
Length = 342
Score = 110 bits (274), Expect = 1e-24
Identities = 55/74 (74%), Positives = 61/74 (82%)
Frame = +2
Query: 2 KAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFDAKAGIQLTDTFVKLVAWYDNEY 181
K AIK ASE MKGIL YTE++VVS DF D SSIFDAKAGI L+DTFVKLVAWYDNE+
Sbjct: 263 KTAIKEASEGQMKGILGYTEDDVVSTDFITDSRSSIFDAKAGIALSDTFVKLVAWYDNEW 322
Query: 182 GYSCRVIDLIQHMS 223
GYS RV+DLI HM+
Sbjct: 323 GYSNRVVDLIVHMA 336
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,907,835
Number of Sequences: 369166
Number of extensions: 627630
Number of successful extensions: 1387
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1359
length of database: 68,354,980
effective HSP length: 81
effective length of database: 53,391,445
effective search space used: 1708526240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)