Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_J10
(900 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9R013|CATF_MOUSE Cathepsin F precursor 144 3e-34
sp|Q9UBX1|CATF_HUMAN Cathepsin F precursor (CATSF) 140 5e-33
sp|P43295|A494_ARATH Probable cysteine proteinase A494 prec... 139 1e-32
sp|P43296|RD19A_ARATH Cysteine proteinase RD19a precursor (... 139 1e-32
sp|Q26534|CATL_SCHMA Cathepsin L precursor (SMCL1) 136 9e-32
sp|P14658|CYSP_TRYBB Cysteine proteinase precursor 131 3e-30
sp|P25804|CYSP_PEA Cysteine proteinase 15A precursor (Turgo... 130 4e-30
sp|P04988|CYSP1_DICDI Cysteine proteinase 1 precursor 126 7e-29
sp|P25775|LMCPA_LEIME Cysteine proteinase A precursor 126 9e-29
sp|P35591|CYSP1_LEIPI Cysteine proteinase 1 precursor (Amas... 125 1e-28
>sp|Q9R013|CATF_MOUSE Cathepsin F precursor
Length = 462
Score = 144 bits (364), Expect = 3e-34
Identities = 74/147 (50%), Positives = 98/147 (66%), Gaps = 2/147 (1%)
Frame = +1
Query: 466 FDLFKKKFNKVYENDEEEEKRINLFHTNIKRSMVMRFLEKGTAEYGVTQFSDLTEEEFTN 645
F F +N+ YE+ EE + R+ +F N+ R+ ++ L++GTA+YG+T+FSDLTEEEF
Sbjct: 165 FKDFMTTYNRTYESREEAQWRLTVFARNMIRAQKIQALDRGTAQYGITKFSDLTEEEFHT 224
Query: 646 QYLSPKYDLSKKPQRIAQIPQDIR--TGQAIDWRVLGAVTPVKNQGSCGSCWAFSTTGNI 819
YL+P L K+ R + I DWR GAVT VKNQG CGSCWAFS TGN+
Sbjct: 225 IYLNPL--LQKESGRKMSPAKSINDLAPPEWDWRKKGAVTEVKNQGMCGSCWAFSVTGNV 282
Query: 820 EGQWFIRTKRLVSLSEQQLVDCDTVDE 900
EGQWF+ L+SLSEQ+L+DCD VD+
Sbjct: 283 EGQWFLNRGTLLSLSEQELLDCDKVDK 309
>sp|Q9UBX1|CATF_HUMAN Cathepsin F precursor (CATSF)
Length = 484
Score = 140 bits (353), Expect = 5e-33
Identities = 75/157 (47%), Positives = 104/157 (66%), Gaps = 3/157 (1%)
Frame = +1
Query: 439 DGDIVSGSNFDLFKKKFNKVYENDEEEEKRINLFHTNIKRSMVMRFLEKGTAEYGVTQFS 618
D + S F F +N+ YE+ EE R+++F N+ R+ ++ L++GTA+YGVT+FS
Sbjct: 178 DLPVKMASIFKNFVITYNRTYESKEEARWRLSVFVNNMVRAQKIQALDRGTAQYGVTKFS 237
Query: 619 DLTEEEFTNQYLSPKYDLSKKP---QRIAQIPQDIRTGQAIDWRVLGAVTPVKNQGSCGS 789
DLTEEEF YL+ L K+P + A+ D+ + DWR GAVT VK+QG CGS
Sbjct: 238 DLTEEEFRTIYLNTL--LRKEPGNKMKQAKSVGDLAPPEW-DWRSKGAVTKVKDQGMCGS 294
Query: 790 CWAFSTTGNIEGQWFIRTKRLVSLSEQQLVDCDTVDE 900
CWAFS TGN+EGQWF+ L+SLSEQ+L+DCD +D+
Sbjct: 295 CWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDKMDK 331
>sp|P43295|A494_ARATH Probable cysteine proteinase A494 precursor
Length = 361
Score = 139 bits (350), Expect = 1e-32
Identities = 76/147 (51%), Positives = 97/147 (65%), Gaps = 2/147 (1%)
Frame = +1
Query: 454 SGSNFDLFKKKFNKVYENDEEEEKRINLFHTNIKRSMVMRFLEKGTAEYGVTQFSDLTEE 633
S +F LFKKKF KVY + EE R ++F N+ R+M + ++ +A +GVTQFSDLT
Sbjct: 44 SEDHFTLFKKKFGKVYGSIEEHYYRFSVFKANLLRAMRHQKMDP-SARHGVTQFSDLTRS 102
Query: 634 EFTNQYLSPK--YDLSKKPQRIAQIPQDIRTGQAIDWRVLGAVTPVKNQGSCGSCWAFST 807
EF ++L K + L K + +P + DWR GAVTPVKNQGSCGSCW+FST
Sbjct: 103 EFRRKHLGVKGGFKLPKDANQAPILPTQ-NLPEEFDWRDRGAVTPVKNQGSCGSCWSFST 161
Query: 808 TGNIEGQWFIRTKRLVSLSEQQLVDCD 888
TG +EG F+ T +LVSLSEQQLVDCD
Sbjct: 162 TGALEGAHFLATGKLVSLSEQQLVDCD 188
>sp|P43296|RD19A_ARATH Cysteine proteinase RD19a precursor (RD19)
Length = 368
Score = 139 bits (349), Expect = 1e-32
Identities = 73/149 (48%), Positives = 100/149 (67%), Gaps = 2/149 (1%)
Frame = +1
Query: 448 IVSGSNFDLFKKKFNKVYENDEEEEKRINLFHTNIKRSMVMRFLEKGTAEYGVTQFSDLT 627
+ S +F LFK+KF KVY ++EE + R ++F N++R+ + L+ +A +GVTQFSDLT
Sbjct: 45 LTSEDHFSLFKRKFGKVYASNEEHDYRFSVFKANLRRARRHQKLDP-SATHGVTQFSDLT 103
Query: 628 EEEFTNQYLSPK--YDLSKKPQRIAQIPQDIRTGQAIDWRVLGAVTPVKNQGSCGSCWAF 801
EF ++L + + L K + +P + + DWR GAVTPVKNQGSCGSCW+F
Sbjct: 104 RSEFRKKHLGVRSGFKLPKDANKAPILPTE-NLPEDFDWRDHGAVTPVKNQGSCGSCWSF 162
Query: 802 STTGNIEGQWFIRTKRLVSLSEQQLVDCD 888
S TG +EG F+ T +LVSLSEQQLVDCD
Sbjct: 163 SATGALEGANFLATGKLVSLSEQQLVDCD 191
>sp|Q26534|CATL_SCHMA Cathepsin L precursor (SMCL1)
Length = 319
Score = 136 bits (342), Expect = 9e-32
Identities = 70/146 (47%), Positives = 97/146 (66%), Gaps = 4/146 (2%)
Frame = +1
Query: 475 FKKKFNKVYENDEEEEKRINLFHTNIKRSMVMRFLEKGTAEYGVTQFSDLTEEEFTNQYL 654
FK K+ K Y ++ E+E R N+F +NI ++ + + +G+A YGVT +SDLT +EF +L
Sbjct: 23 FKLKYRKQY-HETEDEIRFNIFKSNILKAQLYQVFVRGSAIYGVTPYSDLTTDEFARTHL 81
Query: 655 SPKYDL----SKKPQRIAQIPQDIRTGQAIDWRVLGAVTPVKNQGSCGSCWAFSTTGNIE 822
+ + + S P + + +I DWR GAVT VKNQG CGSCWAFSTTGN+E
Sbjct: 82 TASWVVPSSRSNTPTSLGKEVNNIPKN--FDWREKGAVTEVKNQGMCGSCWAFSTTGNVE 139
Query: 823 GQWFIRTKRLVSLSEQQLVDCDTVDE 900
QWF +T +L+SLSEQQLVDCD +D+
Sbjct: 140 SQWFRKTGKLLSLSEQQLVDCDGLDD 165
>sp|P14658|CYSP_TRYBB Cysteine proteinase precursor
Length = 450
Score = 131 bits (329), Expect = 3e-30
Identities = 70/147 (47%), Positives = 93/147 (63%), Gaps = 3/147 (2%)
Frame = +1
Query: 466 FDLFKKKFNKVYENDEEEEKRINLFHTNIKRSMVMRFLEKGTAEYGVTQFSDLTEEEFTN 645
F FKKK+ KVY++ +EE R F N++++ + A +GVT FSD+T EEF
Sbjct: 41 FAAFKKKYGKVYKDAKEEAFRFRAFEENMEQAKIQAAANP-YATFGVTPFSDMTREEFRA 99
Query: 646 QYLSPKYDLSKKPQRIAQIPQDIRTGQA---IDWRVLGAVTPVKNQGSCGSCWAFSTTGN 816
+Y + + +R+ + ++ TG+A +DWR GAVTPVK QG CGSCWAFST GN
Sbjct: 100 RYRNGASYFAAAQKRLRKTV-NVTTGRAPAAVDWREKGAVTPVKVQGQCGSCWAFSTIGN 158
Query: 817 IEGQWFIRTKRLVSLSEQQLVDCDTVD 897
IEGQW + LVSLSEQ LV CDT+D
Sbjct: 159 IEGQWQVAGNPLVSLSEQMLVSCDTID 185
>sp|P25804|CYSP_PEA Cysteine proteinase 15A precursor (Turgor-responsive protein 15A)
Length = 363
Score = 130 bits (328), Expect = 4e-30
Identities = 72/146 (49%), Positives = 95/146 (65%), Gaps = 2/146 (1%)
Frame = +1
Query: 463 NFDLFKKKFNKVYENDEEEEKRINLFHTNIKRSMVMRFLEKGTAEYGVTQFSDLTEEEFT 642
+F FK KF+K Y EE + R +F +N+ ++ + + + TAE+G+T+FSDLT EF
Sbjct: 47 HFTSFKSKFSKSYATKEEHDYRFGVFKSNLIKAKLHQNRDP-TAEHGITKFSDLTASEFR 105
Query: 643 NQYLSPKYDLSKKPQRIAQIPQDIRTG--QAIDWRVLGAVTPVKNQGSCGSCWAFSTTGN 816
Q+L K L + P + P T + DWR GAVTPVK+QGSCGSCWAFSTTG
Sbjct: 106 RQFLGLKKRL-RLPAHAQKAPILPTTNLPEDFDWREKGAVTPVKDQGSCGSCWAFSTTGA 164
Query: 817 IEGQWFIRTKRLVSLSEQQLVDCDTV 894
+EG ++ T +LVSLSEQQLVDCD V
Sbjct: 165 LEGAHYLATGKLVSLSEQQLVDCDHV 190
>sp|P04988|CYSP1_DICDI Cysteine proteinase 1 precursor
Length = 343
Score = 126 bits (317), Expect = 7e-29
Identities = 69/149 (46%), Positives = 90/149 (60%), Gaps = 6/149 (4%)
Frame = +1
Query: 460 SNFDLFKKKFNKVYENDEEEEKRINLFHTNIKRSMVMRFL---EKGTAEYGVTQFSDLTE 630
S F F+ KFNK Y ++E E R +F +N+ + + + K ++GV +F+DL+
Sbjct: 27 SQFLEFQDKFNKKYSHEEYLE-RFEIFKSNLGKIEELNLIAINHKADTKFGVNKFADLSS 85
Query: 631 EEFTNQYLSPKYDLSKKPQRIAQIPQDIRTGQ---AIDWRVLGAVTPVKNQGSCGSCWAF 801
+EF N YL+ K + +A D A DWR GAVTPVKNQG CGSCW+F
Sbjct: 86 DEFKNYYLNNKEAIFTDDLPVADYLDDEFINSIPTAFDWRTRGAVTPVKNQGQCGSCWSF 145
Query: 802 STTGNIEGQWFIRTKRLVSLSEQQLVDCD 888
STTGN+EGQ FI +LVSLSEQ LVDCD
Sbjct: 146 STTGNVEGQHFISQNKLVSLSEQNLVDCD 174
>sp|P25775|LMCPA_LEIME Cysteine proteinase A precursor
Length = 354
Score = 126 bits (316), Expect = 9e-29
Identities = 69/159 (43%), Positives = 92/159 (57%), Gaps = 4/159 (2%)
Frame = +1
Query: 436 PDGDIVSGSNFDLFKKKFNKVYENDEEEEKRINLFHTNIKRSMVMRFLEKGTAEYGVT-Q 612
P + V+ +++ FKK+ K + D EE R N F N++ + + + A Y V+ +
Sbjct: 32 PVDNFVASAHYGSFKKRHGKAFGGDAEEGHRFNAFKQNMQTAYFLN-TQNPHAHYDVSGK 90
Query: 613 FSDLTEEEFTNQYLSPKYDLS--KKPQRIAQIPQDIRTG-QAIDWRVLGAVTPVKNQGSC 783
F+DLT +EF YL+P Y K + + +G ++DWR GAVTPVKNQG C
Sbjct: 91 FADLTPQEFAKLYLNPDYYARHLKNHKEDVHVDDSAPSGVMSVDWRDKGAVTPVKNQGLC 150
Query: 784 GSCWAFSTTGNIEGQWFIRTKRLVSLSEQQLVDCDTVDE 900
GSCWAFS GNIEGQW LVSLSEQ LV CD +DE
Sbjct: 151 GSCWAFSAIGNIEGQWAASGHSLVSLSEQMLVSCDNIDE 189
>sp|P35591|CYSP1_LEIPI Cysteine proteinase 1 precursor (Amastigote cysteine proteinase
A-1)
Length = 354
Score = 125 bits (315), Expect = 1e-28
Identities = 69/159 (43%), Positives = 92/159 (57%), Gaps = 4/159 (2%)
Frame = +1
Query: 436 PDGDIVSGSNFDLFKKKFNKVYENDEEEEKRINLFHTNIKRSMVMRFLEKGTAEYGVT-Q 612
P + V+ +++ FKK+ K + D EE R N F N++ + + + A Y V+ +
Sbjct: 32 PVDNFVASAHYGSFKKRHGKAFGGDAEEGHRFNAFKQNMQTAYFLN-TQNPHAHYDVSGK 90
Query: 613 FSDLTEEEFTNQYLSPKYDLS--KKPQRIAQIPQDIRTG-QAIDWRVLGAVTPVKNQGSC 783
F+DLT +EF YL+P Y K + + +G ++DWR GAVTPVKNQG C
Sbjct: 91 FADLTPQEFAKLYLNPDYYARHLKDHKEDVHVDDSAPSGVMSVDWRDKGAVTPVKNQGLC 150
Query: 784 GSCWAFSTTGNIEGQWFIRTKRLVSLSEQQLVDCDTVDE 900
GSCWAFS GNIEGQW LVSLSEQ LV CD +DE
Sbjct: 151 GSCWAFSAIGNIEGQWAASGHSLVSLSEQMLVSCDNIDE 189
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,188,897
Number of Sequences: 369166
Number of extensions: 1776763
Number of successful extensions: 5671
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5558
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9078450570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)