Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_J02
(918 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P79235|FPR1_PONPY fMet-Leu-Phe receptor (fMLP receptor) ... 30 7.3
sp|P79176|FPR1_GORGO fMet-Leu-Phe receptor (fMLP receptor) ... 30 9.5
>sp|P79235|FPR1_PONPY fMet-Leu-Phe receptor (fMLP receptor) (N-formyl peptide receptor)
(FPR) (N-formylpeptide chemoattractant receptor)
Length = 346
Score = 30.4 bits (67), Expect = 7.3
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 382 LILAPLVVHSTLKPQKFPEVHCHFCFSPWS 293
L+ P+++ T P K V C F FSPW+
Sbjct: 152 LLTLPVIIRVTTVPGKMGTVSCTFNFSPWT 181
>sp|P79176|FPR1_GORGO fMet-Leu-Phe receptor (fMLP receptor) (N-formyl peptide receptor)
(FPR) (N-formylpeptide chemoattractant receptor)
Length = 346
Score = 30.0 bits (66), Expect = 9.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 382 LILAPLVVHSTLKPQKFPEVHCHFCFSPWS 293
L+ P+++ T P K V C F FSPW+
Sbjct: 152 LLTLPVIIRVTTVPGKMGTVACTFNFSPWT 181
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,434,931
Number of Sequences: 369166
Number of extensions: 1644667
Number of successful extensions: 2901
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2901
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9366655350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)