Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_I22
(657 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P15845|SM20_SCHMA 20 kDa calcium-binding protein (Antige... 265 8e-71
sp|Q9BLG0|TNNC_TODPA Troponin C (TN-C) 143 3e-34
sp|P35622|TNNC_PATYE Troponin C (TN-C) 143 4e-34
sp|Q95NR9|CALM_METSE Calmodulin (CaM) 119 7e-27
sp|P02594|CALM_ELEEL Calmodulin (CaM) 118 2e-26
sp|P62184|CALM_RENRE Calmodulin (CaM) 118 2e-26
sp|P60204|CALM_EMENI Calmodulin (CaM) >gi|41018622|sp|P6020... 117 2e-26
sp|P61860|CALM_COLTR Calmodulin (CaM) >gi|48428807|sp|P6186... 117 2e-26
sp|O97341|CALM_SUBDO Calmodulin (CaM) 117 2e-26
sp|Q9UB37|CALM2_BRALA Calmodulin-2 (CaM 2) 117 3e-26
>sp|P15845|SM20_SCHMA 20 kDa calcium-binding protein (Antigen SM20)
Length = 154
Score = 265 bits (677), Expect = 8e-71
Identities = 123/153 (80%), Positives = 140/153 (91%)
Frame = +1
Query: 58 MAFKVDDYTIPEEKVKVAKETFKKFDKRGQEKISTNDLGPAFRAMNANVKPDSLKEWADM 237
MAFK+DD+TI E++VK+AK+ FK+FDKRGQEKIST DLGPAFRA+N VKPD+LKEWAD
Sbjct: 1 MAFKIDDFTIQEDQVKIAKDVFKRFDKRGQEKISTTDLGPAFRALNLTVKPDTLKEWADQ 60
Query: 238 VDDDATGFIDLNGFLTCYGKILIDEQDERDMREAFRVLDKKNRGEIDVEDLRWILKSLGD 417
VDDDATGFID NGFL CYGK L ++QDERD+R+AFRVLDK RGEIDVEDLRWILK LGD
Sbjct: 61 VDDDATGFIDFNGFLICYGKKLQEDQDERDLRDAFRVLDKNKRGEIDVEDLRWILKGLGD 120
Query: 418 DLTEEDVEEMIRDTDTDGSGFVDFDEFYKLMTS 516
DLTEE++++MIRDTDTDGSGFVDFDEFYKLMTS
Sbjct: 121 DLTEEEIDDMIRDTDTDGSGFVDFDEFYKLMTS 153
>sp|Q9BLG0|TNNC_TODPA Troponin C (TN-C)
Length = 148
Score = 143 bits (361), Expect = 3e-34
Identities = 67/142 (47%), Positives = 100/142 (70%)
Frame = +1
Query: 85 IPEEKVKVAKETFKKFDKRGQEKISTNDLGPAFRAMNANVKPDSLKEWADMVDDDATGFI 264
I E++ A + FK DK+ + +S +L F+++ +V D L++W D +D+DATG I
Sbjct: 5 ISEKQFNDAHQAFKLHDKKDEGAVSNKELTNLFKSLALHVSDDKLQQWVDEMDEDATGVI 64
Query: 265 DLNGFLTCYGKILIDEQDERDMREAFRVLDKKNRGEIDVEDLRWILKSLGDDLTEEDVEE 444
F + + + +++DER++R AFRVLDK N+G IDVEDLRWILKSLGDDL ++++++
Sbjct: 65 RWEKFKILFERKVQEDEDERELRSAFRVLDKNNQGVIDVEDLRWILKSLGDDLNDDEIQD 124
Query: 445 MIRDTDTDGSGFVDFDEFYKLM 510
MI +TDTDGSG VD++EF LM
Sbjct: 125 MINETDTDGSGTVDYEEFSALM 146
Score = 43.5 bits (101), Expect = 5e-04
Identities = 17/67 (25%), Positives = 42/67 (62%)
Frame = +1
Query: 298 ILIDEQDERDMREAFRVLDKKNRGEIDVEDLRWILKSLGDDLTEEDVEEMIRDTDTDGSG 477
++I E+ D +AF++ DKK+ G + ++L + KSL ++++ +++ + + D D +G
Sbjct: 3 VVISEKQFNDAHQAFKLHDKKDEGAVSNKELTNLFKSLALHVSDDKLQQWVDEMDEDATG 62
Query: 478 FVDFDEF 498
+ +++F
Sbjct: 63 VIRWEKF 69
>sp|P35622|TNNC_PATYE Troponin C (TN-C)
Length = 152
Score = 143 bits (360), Expect = 4e-34
Identities = 66/148 (44%), Positives = 106/148 (71%)
Frame = +1
Query: 73 DDYTIPEEKVKVAKETFKKFDKRGQEKISTNDLGPAFRAMNANVKPDSLKEWADMVDDDA 252
+++ E+++ AK+ F DK+ + +S DLG F+++ VK D +K+W+D +D++A
Sbjct: 2 EEFRASEKQILDAKQAFCNVDKKKEGTVSCKDLGAIFKSLGLLVKDDKIKDWSDEMDEEA 61
Query: 253 TGFIDLNGFLTCYGKILIDEQDERDMREAFRVLDKKNRGEIDVEDLRWILKSLGDDLTEE 432
TG ++ + ++ + + L ++ DER+++EAFRVLDK+ +G I V+ LRWIL SLGD+LTEE
Sbjct: 62 TGRLNCDAWIQLFERKLKEDLDERELKEAFRVLDKEKKGVIKVDVLRWILSSLGDELTEE 121
Query: 433 DVEEMIRDTDTDGSGFVDFDEFYKLMTS 516
++E MI +TDTDGSG VD++EF LM S
Sbjct: 122 EIENMIAETDTDGSGTVDYEEFKCLMMS 149
>sp|Q95NR9|CALM_METSE Calmodulin (CaM)
Length = 149
Score = 119 bits (298), Expect = 7e-27
Identities = 60/144 (41%), Positives = 87/144 (60%)
Frame = +1
Query: 85 IPEEKVKVAKETFKKFDKRGQEKISTNDLGPAFRAMNANVKPDSLKEWADMVDDDATGFI 264
+ EE++ KE F FDK G I+T +LG R++ N L++ + VD D G I
Sbjct: 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTI 64
Query: 265 DLNGFLTCYGKILIDEQDERDMREAFRVLDKKNRGEIDVEDLRWILKSLGDDLTEEDVEE 444
D FLT + + D E ++REAFRV DK G I +LR ++ +LG+ LT+E+V+E
Sbjct: 65 DFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDE 124
Query: 445 MIRDTDTDGSGFVDFDEFYKLMTS 516
MIR+ D DG G V+++EF K+MTS
Sbjct: 125 MIREADIDGDGQVNYEEFVKMMTS 148
>sp|P02594|CALM_ELEEL Calmodulin (CaM)
Length = 149
Score = 118 bits (295), Expect = 2e-26
Identities = 59/144 (40%), Positives = 87/144 (60%)
Frame = +1
Query: 85 IPEEKVKVAKETFKKFDKRGQEKISTNDLGPAFRAMNANVKPDSLKEWADMVDDDATGFI 264
+ EE++ KE F FDK G I+T +LG R++ N L++ + VD D G I
Sbjct: 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTI 64
Query: 265 DLNGFLTCYGKILIDEQDERDMREAFRVLDKKNRGEIDVEDLRWILKSLGDDLTEEDVEE 444
D FLT K + D E ++REAFRV DK G I +LR ++ +LG+ LT+E+V+E
Sbjct: 65 DFPEFLTMMAKKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDE 124
Query: 445 MIRDTDTDGSGFVDFDEFYKLMTS 516
MIR+ D DG G V+++EF ++MT+
Sbjct: 125 MIREADIDGDGQVNYEEFVQMMTA 148
>sp|P62184|CALM_RENRE Calmodulin (CaM)
Length = 148
Score = 118 bits (295), Expect = 2e-26
Identities = 60/144 (41%), Positives = 87/144 (60%)
Frame = +1
Query: 85 IPEEKVKVAKETFKKFDKRGQEKISTNDLGPAFRAMNANVKPDSLKEWADMVDDDATGFI 264
+ EE++ KE F FDK G I+T +LG R++ N L++ + VD D G I
Sbjct: 4 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTI 63
Query: 265 DLNGFLTCYGKILIDEQDERDMREAFRVLDKKNRGEIDVEDLRWILKSLGDDLTEEDVEE 444
D FLT + + D E ++REAFRV DK G I +LR ++ +LG+ LT+E+V+E
Sbjct: 64 DFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGDGFISAAELRHVMTNLGEKLTDEEVDE 123
Query: 445 MIRDTDTDGSGFVDFDEFYKLMTS 516
MIR+ D DG G V+++EF K+MTS
Sbjct: 124 MIREADIDGDGQVNYEEFVKMMTS 147
>sp|P60204|CALM_EMENI Calmodulin (CaM)
sp|P60205|CALM_ASPOR Calmodulin (CaM)
sp|P60206|CALM_AJECA Calmodulin (CaM)
Length = 149
Score = 117 bits (294), Expect = 2e-26
Identities = 57/143 (39%), Positives = 88/143 (61%)
Frame = +1
Query: 82 TIPEEKVKVAKETFKKFDKRGQEKISTNDLGPAFRAMNANVKPDSLKEWADMVDDDATGF 261
++ EE+V KE F FDK G +I+T +LG R++ N L++ + VD D G
Sbjct: 4 SLTEEQVSEYKEAFSLFDKDGDGQITTKELGTVMRSLGQNPSESELQDMINEVDADNNGT 63
Query: 262 IDLNGFLTCYGKILIDEQDERDMREAFRVLDKKNRGEIDVEDLRWILKSLGDDLTEEDVE 441
ID FLT + + D E ++REAF+V D+ N G I +LR ++ S+G+ LT+++V+
Sbjct: 64 IDFPEFLTMMARKMKDTDSEEEIREAFKVFDRDNNGFISAAELRHVMTSIGEKLTDDEVD 123
Query: 442 EMIRDTDTDGSGFVDFDEFYKLM 510
EMIR+ D DG G +D++EF +LM
Sbjct: 124 EMIREADQDGDGRIDYNEFVQLM 146
>sp|P61860|CALM_COLTR Calmodulin (CaM)
sp|P61861|CALM_COLGL Calmodulin (CaM)
sp|P61859|CALM_NEUCR Calmodulin (CaM)
Length = 149
Score = 117 bits (294), Expect = 2e-26
Identities = 57/143 (39%), Positives = 88/143 (61%)
Frame = +1
Query: 82 TIPEEKVKVAKETFKKFDKRGQEKISTNDLGPAFRAMNANVKPDSLKEWADMVDDDATGF 261
++ EE+V KE F FDK G +I+T +LG R++ N L++ + VD D G
Sbjct: 4 SLTEEQVSEFKEAFSLFDKDGDGQITTKELGTVMRSLGQNPSESELQDMINEVDADNNGT 63
Query: 262 IDLNGFLTCYGKILIDEQDERDMREAFRVLDKKNRGEIDVEDLRWILKSLGDDLTEEDVE 441
ID FLT + + D E ++REAF+V D+ N G I +LR ++ S+G+ LT+++V+
Sbjct: 64 IDFPEFLTMMARKMKDTDSEEEIREAFKVFDRDNNGFISAAELRHVMTSIGEKLTDDEVD 123
Query: 442 EMIRDTDTDGSGFVDFDEFYKLM 510
EMIR+ D DG G +D++EF +LM
Sbjct: 124 EMIREADQDGDGRIDYNEFVQLM 146
>sp|O97341|CALM_SUBDO Calmodulin (CaM)
Length = 149
Score = 117 bits (294), Expect = 2e-26
Identities = 59/144 (40%), Positives = 87/144 (60%)
Frame = +1
Query: 85 IPEEKVKVAKETFKKFDKRGQEKISTNDLGPAFRAMNANVKPDSLKEWADMVDDDATGFI 264
+ EE++ KE F FDK G I+T +LG R++ N L++ + VD D G I
Sbjct: 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDTDGNGTI 64
Query: 265 DLNGFLTCYGKILIDEQDERDMREAFRVLDKKNRGEIDVEDLRWILKSLGDDLTEEDVEE 444
D FLT + + + E ++REAFRV DK G I +LR ++ +LG+ LT+E+V+E
Sbjct: 65 DFPEFLTMMARKMKETDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDE 124
Query: 445 MIRDTDTDGSGFVDFDEFYKLMTS 516
MIR+ DTDG G V+++EF +MTS
Sbjct: 125 MIREADTDGDGQVNYEEFVGMMTS 148
>sp|Q9UB37|CALM2_BRALA Calmodulin-2 (CaM 2)
Length = 149
Score = 117 bits (293), Expect = 3e-26
Identities = 58/144 (40%), Positives = 87/144 (60%)
Frame = +1
Query: 85 IPEEKVKVAKETFKKFDKRGQEKISTNDLGPAFRAMNANVKPDSLKEWADMVDDDATGFI 264
+ EE++ KE F FDK G I+T +LG R++ N L++ + VD D G I
Sbjct: 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTI 64
Query: 265 DLNGFLTCYGKILIDEQDERDMREAFRVLDKKNRGEIDVEDLRWILKSLGDDLTEEDVEE 444
D FLT + + D E ++REAFRV DK G I +LR ++ +LG+ LT+E+V+E
Sbjct: 65 DFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDE 124
Query: 445 MIRDTDTDGSGFVDFDEFYKLMTS 516
M+R+ D DG G V+++EF ++MTS
Sbjct: 125 MVREADIDGDGQVNYEEFVEMMTS 148
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,623,649
Number of Sequences: 369166
Number of extensions: 1040942
Number of successful extensions: 4605
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4233
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5462583840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)